Wall clock time and date at job start Tue Mar 9 2021 14:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47116 * 2 1 4 4 C 1.50704 * 109.47171 * 120.00028 * 2 1 3 5 5 C 1.35450 * 125.56329 * 244.97677 * 4 2 1 6 6 C 1.39837 * 107.86194 * 179.76437 * 5 4 2 7 7 C 1.37875 * 107.08448 * 0.41376 * 6 5 4 8 8 C 1.46682 * 126.23147 * 179.84886 * 7 6 5 9 9 O 1.21696 * 119.99507 * 359.69414 * 8 7 6 10 10 N 1.34771 * 119.99773 * 179.68748 * 8 7 6 11 11 C 1.46506 * 119.99638 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.90784 * 313.93616 * 11 10 8 13 13 C 1.53781 * 113.61360 * 85.18727 * 11 10 8 14 14 C 1.53782 * 87.07828 * 89.11255 * 13 11 10 15 15 H 1.09006 * 113.60894 * 140.06957 * 14 13 11 16 16 N 1.46498 * 113.61532 * 270.88273 * 14 13 11 17 17 C 1.34779 * 119.99800 * 201.86058 * 16 14 13 18 18 O 1.21510 * 120.00210 * 359.97438 * 17 16 14 19 19 O 1.34641 * 119.99865 * 180.02562 * 17 16 14 20 20 C 1.45200 * 116.99880 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46875 * 179.97438 * 20 19 17 22 22 C 1.38234 * 119.99714 * 90.00176 * 21 20 19 23 23 C 1.38231 * 120.00020 * 180.27483 * 22 21 20 24 24 C 1.38232 * 120.00148 * 359.46580 * 23 22 21 25 25 C 1.38239 * 119.99738 * 0.55797 * 24 23 22 26 26 C 1.38229 * 120.00355 * 270.02163 * 21 20 19 27 27 C 1.53776 * 87.08218 * 25.43372 * 14 13 11 28 28 N 1.35533 * 125.56042 * 64.99820 * 4 2 1 29 29 H 0.96700 * 114.00109 * 59.99251 * 1 2 3 30 30 H 1.09002 * 109.46850 * 240.00095 * 2 1 3 31 31 H 1.48496 * 110.00306 * 298.68581 * 3 2 1 32 32 H 1.48508 * 109.99979 * 60.00278 * 3 2 1 33 33 H 1.07995 * 126.06947 * 0.02562 * 5 4 2 34 34 H 1.08001 * 126.45460 * 180.26370 * 6 5 4 35 35 H 0.96998 * 120.00325 * 0.02562 * 10 8 7 36 36 H 1.08998 * 113.61241 * 334.56857 * 13 11 10 37 37 H 1.08992 * 113.61157 * 203.66478 * 13 11 10 38 38 H 0.96998 * 120.00181 * 21.85214 * 16 14 13 39 39 H 1.09007 * 109.46741 * 60.00153 * 20 19 17 40 40 H 1.08995 * 109.47137 * 299.99772 * 20 19 17 41 41 H 1.08005 * 119.99845 * 0.02562 * 22 21 20 42 42 H 1.08001 * 120.00074 * 179.72973 * 23 22 21 43 43 H 1.07995 * 120.00576 * 180.27173 * 24 23 22 44 44 H 1.07998 * 120.00055 * 179.71777 * 25 24 23 45 45 H 1.08005 * 120.00219 * 359.97438 * 26 21 20 46 46 H 1.08996 * 113.61648 * 89.11414 * 27 14 13 47 47 H 1.09005 * 113.61213 * 220.01594 * 27 14 13 48 48 H 0.96993 * 125.68226 * 359.96415 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6334 -0.1395 2.2384 6 6 2.9032 -1.1299 3.1879 7 6 2.3538 -2.3033 2.7166 8 6 2.3948 -3.6091 3.3836 9 8 2.9588 -3.7273 4.4555 10 7 1.8077 -4.6777 2.8094 11 6 1.8492 -5.9820 3.4754 12 1 2.8405 -6.2352 3.8513 13 6 0.7287 -6.1814 4.5097 14 6 -0.1272 -6.7364 3.3589 15 1 -0.7326 -7.5979 3.6412 16 7 -0.8947 -5.7094 2.6502 17 6 -1.9893 -6.0540 1.9434 18 8 -2.3393 -7.2166 1.8935 19 8 -2.6945 -5.1102 1.2916 20 6 -3.8615 -5.5538 0.5502 21 6 -4.5189 -4.3682 -0.1081 22 6 -4.1408 -3.9874 -1.3820 23 6 -4.7398 -2.8964 -1.9836 24 6 -5.7245 -2.1929 -1.3157 25 6 -6.1022 -2.5734 -0.0415 26 6 -5.4995 -3.6612 0.5622 27 6 1.1920 -7.1098 2.6624 28 7 1.7548 -2.0250 1.5089 29 1 -0.3933 0.4418 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5879 2.4586 -1.2241 32 1 1.5615 2.4679 1.2086 33 1 2.9284 0.8976 2.2999 34 1 3.4426 -1.0005 4.1146 35 1 1.3584 -4.5835 1.9550 36 1 0.3482 -5.2489 4.9264 37 1 0.9664 -6.9217 5.2735 38 1 -0.6153 -4.7814 2.6898 39 1 -4.5671 -6.0275 1.2327 40 1 -3.5566 -6.2704 -0.2124 41 1 -3.3746 -4.5398 -1.9057 42 1 -4.4413 -2.5963 -2.9772 43 1 -6.1956 -1.3433 -1.7874 44 1 -6.8684 -2.0211 0.4822 45 1 -5.7950 -3.9588 1.5575 46 1 1.5563 -8.1040 2.9213 47 1 1.1855 -6.9269 1.5879 48 1 1.2844 -2.6634 0.9504 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_6580494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:41:24 Heat of formation + Delta-G solvation = -35.197871 kcal Electronic energy + Delta-G solvation = -33689.512898 eV Core-core repulsion = 29099.135786 eV Total energy + Delta-G solvation = -4590.377112 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.156 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.60203 -41.98327 -41.02482 -40.14032 -39.33085 -37.81464 -37.53634 -35.21902 -34.12702 -33.04594 -32.13412 -31.91907 -31.44873 -27.84925 -27.21105 -26.88292 -25.55146 -23.66355 -23.61310 -22.62716 -22.24579 -21.61404 -21.30229 -20.87537 -19.87898 -19.59950 -18.63794 -18.31925 -17.80852 -17.56972 -17.22475 -16.90208 -16.63567 -16.33710 -16.16901 -16.10888 -16.01548 -15.71488 -15.20314 -14.93653 -14.78868 -14.66330 -14.51552 -14.30351 -14.09955 -14.00689 -13.89687 -13.58777 -13.53498 -13.44706 -13.40089 -13.07171 -12.71433 -12.25968 -12.19301 -12.14253 -12.02041 -11.86902 -11.78856 -11.59331 -11.31535 -10.63758 -10.51527 -10.25303 -10.09208 -9.94063 -9.93655 -9.29551 -4.84425 0.03949 0.26099 0.38574 1.09395 1.20654 1.51243 1.52957 1.64788 1.85621 1.97732 2.15071 2.23397 2.69249 3.09964 3.23512 3.26716 3.42235 3.60912 3.66464 3.72339 3.78231 3.79366 3.99995 4.00993 4.14628 4.17160 4.18943 4.21406 4.26413 4.44587 4.50244 4.51184 4.61836 4.62278 4.68747 4.73882 4.88062 4.88996 4.92371 4.94115 5.03419 5.06965 5.09275 5.18998 5.43526 5.45185 5.48611 5.51420 5.58933 5.76908 5.96243 6.12168 6.19898 6.37332 6.52065 6.96520 7.07875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.067 4.067 3 Si 0.786 3.214 4 C 0.071 3.929 5 C -0.208 4.208 6 C -0.113 4.113 7 C -0.066 4.066 8 C 0.595 3.405 9 O -0.558 6.558 10 N -0.707 5.707 11 C 0.117 3.883 12 H 0.099 0.901 13 C -0.147 4.147 14 C 0.127 3.873 15 H 0.104 0.896 16 N -0.683 5.683 17 C 0.647 3.353 18 O -0.597 6.597 19 O -0.367 6.367 20 C 0.130 3.870 21 C -0.114 4.114 22 C -0.102 4.102 23 C -0.129 4.129 24 C -0.113 4.113 25 C -0.133 4.133 26 C -0.108 4.108 27 C -0.138 4.138 28 N -0.514 5.514 29 H 0.400 0.600 30 H 0.105 0.895 31 H -0.280 1.280 32 H -0.299 1.299 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.082 0.918 48 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 2.046 -6.605 6.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.175 4.175 3 Si 0.690 3.310 4 C -0.048 4.048 5 C -0.231 4.231 6 C -0.140 4.140 7 C -0.180 4.180 8 C 0.384 3.616 9 O -0.436 6.436 10 N -0.359 5.359 11 C 0.012 3.988 12 H 0.117 0.883 13 C -0.186 4.186 14 C 0.023 3.977 15 H 0.122 0.878 16 N -0.342 5.342 17 C 0.401 3.599 18 O -0.487 6.487 19 O -0.281 6.281 20 C 0.057 3.943 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.151 4.151 26 C -0.126 4.126 27 C -0.177 4.177 28 N -0.111 5.111 29 H 0.251 0.749 30 H 0.123 0.877 31 H -0.206 1.206 32 H -0.226 1.226 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.100 0.900 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.955 1.732 -5.447 5.795 hybrid contribution -1.671 -0.067 -0.849 1.876 sum -0.716 1.665 -6.296 6.552 Atomic orbital electron populations 1.86549 1.18055 1.80938 1.51459 1.24743 0.84429 1.12184 0.96138 0.93463 0.90287 0.70548 0.76723 1.20184 1.02564 0.83753 0.98310 1.20898 1.06794 1.00758 0.94696 1.21479 1.01330 0.90749 1.00423 1.20308 1.11165 0.95540 0.90942 1.17119 0.77820 0.82594 0.84101 1.90860 1.45408 1.84870 1.22446 1.45634 1.57226 1.08467 1.24604 1.22040 1.00089 0.82173 0.94449 0.88266 1.23797 0.95035 1.02814 0.96959 1.22091 0.92004 0.90732 0.92877 0.87818 1.44466 1.25800 1.12356 1.51605 1.18280 0.80618 0.82927 0.78098 1.91009 1.71342 1.19430 1.66958 1.86319 1.40823 1.38928 1.62074 1.21814 0.83510 0.94529 0.94487 1.19551 0.98418 0.97952 0.95493 1.21312 0.99270 0.97000 0.94387 1.21477 0.96684 0.95359 1.01111 1.21609 0.96776 0.99919 0.94823 1.21466 1.00559 0.97042 0.96010 1.21309 0.96022 0.95267 0.99983 1.23771 0.93741 0.99753 1.00403 1.41861 1.42574 1.09581 1.17080 0.74916 0.87715 1.20616 1.22626 0.81887 0.83249 0.76029 0.91486 0.85249 0.75464 0.90331 0.89652 0.84602 0.83699 0.83904 0.84243 0.85319 0.84851 0.89971 0.73555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.14 12.86 -148.98 -1.92 -0.77 16 2 C -0.07 0.31 3.07 71.24 0.22 0.53 16 3 Si 0.79 -3.87 30.56 68.60 2.10 -1.78 16 4 C 0.07 -0.02 6.50 41.34 0.27 0.25 16 5 C -0.21 -0.31 9.32 22.01 0.21 -0.11 16 6 C -0.11 -0.53 10.65 22.57 0.24 -0.29 16 7 C -0.07 -0.22 7.06 40.35 0.28 0.06 16 8 C 0.59 2.81 7.79 86.45 0.67 3.49 16 9 O -0.56 -7.00 16.82 -4.34 -0.07 -7.07 16 10 N -0.71 1.54 4.33 -443.99 -1.92 -0.38 16 11 C 0.12 -0.34 4.00 45.52 0.18 -0.16 16 12 H 0.10 -0.13 8.05 -2.39 -0.02 -0.15 16 13 C -0.15 0.41 7.62 31.12 0.24 0.65 16 14 C 0.13 -0.26 4.28 45.52 0.19 -0.07 16 15 H 0.10 0.04 7.54 -2.38 -0.02 0.02 16 16 N -0.68 0.07 4.96 -567.60 -2.82 -2.75 16 17 C 0.65 3.67 8.75 129.79 1.14 4.80 16 18 O -0.60 -7.01 15.77 19.81 0.31 -6.70 16 19 O -0.37 -1.69 10.25 -55.51 -0.57 -2.26 16 20 C 0.13 0.38 5.60 71.24 0.40 0.78 16 21 C -0.11 -0.25 5.52 -19.87 -0.11 -0.36 16 22 C -0.10 -0.01 9.70 22.27 0.22 0.20 16 23 C -0.13 0.18 10.05 22.27 0.22 0.40 16 24 C -0.11 0.12 10.05 22.27 0.22 0.35 16 25 C -0.13 -0.03 10.05 22.27 0.22 0.19 16 26 C -0.11 -0.21 9.70 22.27 0.22 0.01 16 27 C -0.14 0.79 7.57 31.12 0.24 1.03 16 28 N -0.51 0.73 5.99 -171.93 -1.03 -0.30 16 29 H 0.40 -3.89 8.74 -74.06 -0.65 -4.54 16 30 H 0.11 -1.03 7.96 -2.39 -0.02 -1.05 16 31 H -0.28 0.42 7.11 99.48 0.71 1.12 16 32 H -0.30 -1.01 7.11 99.48 0.71 -0.31 16 33 H 0.16 -0.34 6.19 -2.91 -0.02 -0.36 16 34 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 35 H 0.40 -2.57 6.96 -92.71 -0.64 -3.22 16 36 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.13 -0.75 8.14 -2.39 -0.02 -0.76 16 38 H 0.41 -0.89 7.30 -92.71 -0.68 -1.57 16 39 H 0.08 0.25 8.08 -2.38 -0.02 0.24 16 40 H 0.09 0.16 8.08 -2.39 -0.02 0.14 16 41 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 42 H 0.15 -0.84 8.06 -2.91 -0.02 -0.87 16 43 H 0.14 -0.75 8.06 -2.91 -0.02 -0.77 16 44 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 45 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 46 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 47 H 0.08 -0.46 8.13 -2.38 -0.02 -0.48 16 48 H 0.43 -2.72 8.19 -92.71 -0.76 -3.48 16 Total: 0.00 -25.43 411.02 -2.30 -27.73 By element: Atomic # 1 Polarization: -15.81 SS G_CDS: -1.65 Total: -17.46 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.27 Total: 11.75 kcal Atomic # 7 Polarization: 2.34 SS G_CDS: -5.77 Total: -3.43 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -2.24 Total: -16.81 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.10 Total: -1.78 kcal Total: -25.43 -2.30 -27.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_6580494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.469 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds