Wall clock time and date at job start Tue Mar 9 2021 14:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.33821 * 122.45205 * 2 1 4 4 C 1.50697 * 124.51896 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47298 * 329.99267 * 4 3 2 6 6 Si 1.86309 * 109.46940 * 209.99664 * 4 3 2 7 7 S 1.70612 * 110.95572 * 180.02562 * 3 2 1 8 8 C 1.75825 * 91.56583 * 0.02562 * 7 3 2 9 9 C 1.46588 * 125.45962 * 179.97438 * 8 7 3 10 10 O 1.21703 * 120.00052 * 180.02562 * 9 8 7 11 11 N 1.34770 * 119.99855 * 0.02943 * 9 8 7 12 12 C 1.46508 * 119.99842 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.84358 * 333.04868 * 12 11 9 14 14 C 1.53772 * 113.61641 * 104.35746 * 12 11 9 15 15 C 1.53782 * 87.08047 * 89.11730 * 14 12 11 16 16 H 1.09002 * 113.69586 * 139.99322 * 15 14 12 17 17 N 1.46509 * 113.61246 * 270.88392 * 15 14 12 18 18 C 1.34778 * 119.99957 * 182.66471 * 17 15 14 19 19 O 1.21511 * 119.99698 * 359.97438 * 18 17 15 20 20 O 1.34629 * 119.99972 * 180.02562 * 18 17 15 21 21 C 1.45201 * 116.99889 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.46939 * 179.97438 * 21 20 18 23 23 C 1.38238 * 120.00203 * 269.72647 * 22 21 20 24 24 C 1.38235 * 119.99642 * 179.78891 * 23 22 21 25 25 C 1.38228 * 120.00457 * 0.44132 * 24 23 22 26 26 C 1.38235 * 120.00144 * 359.81698 * 25 24 23 27 27 C 1.38238 * 119.99870 * 90.00285 * 22 21 20 28 28 C 1.53775 * 87.08134 * 25.43032 * 15 14 12 29 29 C 1.36650 * 109.08158 * 0.26320 * 8 7 3 30 30 H 1.08996 * 109.47299 * 89.99874 * 1 2 3 31 31 H 1.08996 * 109.47465 * 210.00055 * 1 2 3 32 32 H 1.09005 * 109.46870 * 329.99821 * 1 2 3 33 33 H 1.09001 * 109.47168 * 89.99897 * 4 3 2 34 34 H 0.96698 * 113.99992 * 180.02562 * 5 4 3 35 35 H 1.48496 * 109.99968 * 298.68429 * 6 4 3 36 36 H 1.48502 * 109.99720 * 60.00063 * 6 4 3 37 37 H 0.97000 * 120.00512 * 359.97438 * 11 9 8 38 38 H 1.09003 * 113.61349 * 203.66282 * 14 12 11 39 39 H 1.08998 * 113.61843 * 334.57031 * 14 12 11 40 40 H 0.96998 * 120.00021 * 2.66130 * 17 15 14 41 41 H 1.08993 * 109.47573 * 299.99573 * 21 20 18 42 42 H 1.09001 * 109.46850 * 60.00180 * 21 20 18 43 43 H 1.07997 * 119.99901 * 0.02562 * 23 22 21 44 44 H 1.08006 * 119.99690 * 180.27753 * 24 23 22 45 45 H 1.08000 * 120.00688 * 179.83366 * 25 24 23 46 46 H 1.07997 * 120.00799 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.00021 * 359.97438 * 27 22 21 48 48 H 1.09004 * 113.61737 * 220.02049 * 28 15 14 49 49 H 1.09001 * 113.61633 * 89.11903 * 28 15 14 50 50 H 1.08007 * 123.34862 * 179.71514 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3752 2.4983 -0.6727 6 14 2.7922 3.6829 -0.8778 7 16 3.8969 0.7892 -0.0007 8 6 3.5937 -0.9427 -0.0018 9 6 4.6231 -1.9863 -0.0033 10 8 4.3001 -3.1597 -0.0045 11 7 5.9272 -1.6463 -0.0034 12 6 6.9561 -2.6893 -0.0055 13 1 6.6160 -3.6201 0.4485 14 6 7.6368 -2.8804 -1.3711 15 6 8.6478 -1.8094 -0.9288 16 1 9.6747 -2.0292 -1.2208 17 7 8.2406 -0.4430 -1.2660 18 6 9.0570 0.5921 -0.9856 19 8 10.1305 0.3920 -0.4526 20 8 8.6825 1.8477 -1.2950 21 6 9.6115 2.9132 -0.9635 22 6 9.0265 4.2377 -1.3812 23 6 9.2759 4.7353 -2.6466 24 6 8.7356 5.9482 -3.0311 25 6 7.9535 6.6679 -2.1473 26 6 7.7085 6.1729 -0.8800 27 6 8.2451 4.9578 -0.4969 28 6 8.3199 -2.2102 0.5191 29 6 2.2446 -1.1600 -0.0075 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.4937 2.8502 1.0284 34 1 -0.0626 3.3596 -0.7109 35 1 4.0961 3.7347 -0.1691 36 1 2.9938 3.2383 -2.2803 37 1 6.1847 -0.7111 -0.0029 38 1 8.0777 -3.8683 -1.5048 39 1 7.0176 -2.5745 -2.2143 40 1 7.3835 -0.2834 -1.6912 41 1 9.7907 2.9177 0.1116 42 1 10.5530 2.7506 -1.4882 43 1 9.8896 4.1746 -3.3360 44 1 8.9267 6.3349 -4.0213 45 1 7.5336 7.6167 -2.4467 46 1 7.0978 6.7352 -0.1893 47 1 8.0536 4.5710 0.4931 48 1 8.2520 -1.3633 1.2020 49 1 8.9475 -3.0149 0.9023 50 1 1.8019 -2.1452 -0.0137 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_6739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:41:33 Heat of formation + Delta-G solvation = -47.860965 kcal Electronic energy + Delta-G solvation = -35647.794133 eV Core-core repulsion = 30927.682306 eV Total energy + Delta-G solvation = -4720.111827 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.133 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.16913 -41.30017 -40.34981 -39.98699 -39.35445 -37.54813 -37.35368 -35.24827 -34.16182 -33.05097 -32.24305 -31.90781 -30.25522 -27.87007 -27.14020 -26.92061 -25.43305 -24.36955 -23.60263 -23.02055 -22.30031 -21.90821 -21.12596 -20.06434 -19.92559 -19.34618 -18.44071 -18.25862 -17.84780 -17.51082 -17.41783 -17.20381 -16.54509 -16.52203 -16.34383 -16.15657 -16.05579 -15.79375 -15.64095 -15.01761 -14.80608 -14.68696 -14.49481 -14.45824 -14.42795 -14.23097 -13.99100 -13.72887 -13.51223 -13.37663 -13.35692 -13.11050 -13.06813 -12.93015 -12.59404 -12.29368 -12.28818 -12.19272 -12.14229 -12.01042 -11.87910 -11.78521 -11.58054 -11.43736 -10.70231 -10.53882 -10.30157 -9.93314 -9.92708 -9.80929 -9.52473 -5.21887 -0.82642 0.04540 0.12873 0.39341 0.49520 0.99174 1.08620 1.27183 1.52173 1.53044 1.77843 1.88677 1.89316 2.69399 3.08473 3.18652 3.25924 3.38057 3.49665 3.63660 3.66908 3.70056 3.72873 3.95736 4.01682 4.02064 4.15475 4.18436 4.22930 4.23042 4.38719 4.45267 4.51412 4.52449 4.58817 4.63333 4.64398 4.64956 4.74824 4.84036 4.85024 4.88466 4.92755 4.93573 5.01519 5.04619 5.16221 5.30112 5.40520 5.43283 5.45083 5.49481 5.52584 5.97533 6.06745 6.12286 6.80290 6.86123 7.06896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.099 4.099 3 C -0.202 4.202 4 C -0.037 4.037 5 O -0.549 6.549 6 Si 0.748 3.252 7 S 0.194 5.806 8 C -0.285 4.285 9 C 0.596 3.404 10 O -0.557 6.557 11 N -0.704 5.704 12 C 0.109 3.891 13 H 0.105 0.895 14 C -0.138 4.138 15 C 0.131 3.869 16 H 0.105 0.895 17 N -0.689 5.689 18 C 0.648 3.352 19 O -0.593 6.593 20 O -0.369 6.369 21 C 0.130 3.870 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.131 4.131 27 C -0.107 4.107 28 C -0.146 4.146 29 C -0.050 4.050 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.406 0.594 35 H -0.259 1.259 36 H -0.293 1.293 37 H 0.401 0.599 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.410 0.590 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.132 0.868 48 H 0.068 0.932 49 H 0.133 0.867 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 7.763 -0.237 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.320 4.320 4 C -0.149 4.149 5 O -0.359 6.359 6 Si 0.651 3.349 7 S 0.461 5.539 8 C -0.404 4.404 9 C 0.383 3.617 10 O -0.437 6.437 11 N -0.355 5.355 12 C 0.005 3.995 13 H 0.123 0.877 14 C -0.177 4.177 15 C 0.028 3.972 16 H 0.123 0.877 17 N -0.350 5.350 18 C 0.401 3.599 19 O -0.483 6.483 20 O -0.283 6.283 21 C 0.056 3.944 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.150 4.150 25 C -0.130 4.130 26 C -0.148 4.148 27 C -0.125 4.125 28 C -0.185 4.185 29 C -0.083 4.083 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.258 0.742 35 H -0.184 1.184 36 H -0.220 1.220 37 H 0.237 0.763 38 H 0.156 0.844 39 H 0.098 0.902 40 H 0.247 0.753 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.149 0.851 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.165 0.835 47 H 0.150 0.850 48 H 0.086 0.914 49 H 0.151 0.849 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.254 7.288 -0.445 7.306 hybrid contribution -1.384 -0.956 0.027 1.682 sum -1.638 6.331 -0.418 6.553 Atomic orbital electron populations 1.20515 0.87255 1.03276 1.02895 1.18908 0.99574 0.90081 1.02567 1.23705 0.97922 1.00304 1.10105 1.24098 0.93451 0.94373 1.03019 1.86525 1.32108 1.38416 1.78883 0.94205 0.77962 0.85573 0.77113 1.82971 1.03404 0.97954 1.69528 1.24601 0.98040 0.97446 1.20328 1.17058 0.82153 0.87062 0.75390 1.90832 1.82102 1.19386 1.51372 1.45650 1.04679 1.10320 1.74882 1.22154 0.87214 0.91802 0.98372 0.87699 1.23786 0.96514 1.00247 0.97130 1.22061 1.00226 0.78466 0.96470 0.87750 1.44560 1.21613 1.04221 1.64558 1.18241 0.82865 0.81289 0.77492 1.91013 1.23769 1.85350 1.48149 1.86317 1.49551 1.14502 1.77923 1.21830 0.90383 0.80612 1.01576 1.19570 1.01587 0.94696 0.95806 1.21321 0.99375 0.96641 0.95118 1.21496 0.97734 0.94787 1.00965 1.21641 0.97127 1.00562 0.93642 1.21516 1.00127 0.95887 0.97300 1.21338 0.95900 0.95366 0.99917 1.23810 0.95213 1.02884 0.96625 1.20915 0.91086 1.00620 0.95707 0.91119 0.91683 0.89288 0.87177 0.74180 1.18420 1.21992 0.76285 0.84400 0.90248 0.75295 0.89879 0.90011 0.85082 0.83945 0.83509 0.83545 0.84987 0.91366 0.84926 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 8.70 71.23 0.62 0.52 16 2 C -0.10 -0.46 5.75 -21.05 -0.12 -0.58 16 3 C -0.20 -0.61 5.57 24.68 0.14 -0.47 16 4 C -0.04 0.13 2.75 71.23 0.20 0.33 16 5 O -0.55 2.67 9.81 -148.98 -1.46 1.21 16 6 Si 0.75 -3.03 31.31 68.60 2.15 -0.88 16 7 S 0.19 0.61 19.79 -56.49 -1.12 -0.51 16 8 C -0.28 -1.97 6.45 24.08 0.16 -1.82 16 9 C 0.60 5.07 7.78 86.42 0.67 5.75 16 10 O -0.56 -8.37 16.48 -4.36 -0.07 -8.44 16 11 N -0.70 -1.92 4.96 -444.10 -2.20 -4.12 16 12 C 0.11 0.00 4.28 45.51 0.19 0.20 16 13 H 0.10 0.23 7.54 -2.39 -0.02 0.21 16 14 C -0.14 0.49 7.57 31.12 0.24 0.73 16 15 C 0.13 -0.19 4.00 45.51 0.18 -0.01 16 16 H 0.10 -0.08 8.05 -2.39 -0.02 -0.10 16 17 N -0.69 -0.54 4.34 -567.60 -2.46 -3.01 16 18 C 0.65 4.02 8.75 129.79 1.14 5.16 16 19 O -0.59 -7.10 16.07 19.81 0.32 -6.78 16 20 O -0.37 -1.94 10.25 -55.38 -0.57 -2.51 16 21 C 0.13 0.44 5.60 71.24 0.40 0.84 16 22 C -0.12 -0.30 5.52 -19.86 -0.11 -0.41 16 23 C -0.11 -0.15 9.70 22.27 0.22 0.06 16 24 C -0.13 0.08 10.05 22.27 0.22 0.30 16 25 C -0.11 0.20 10.05 22.27 0.22 0.42 16 26 C -0.13 0.16 10.05 22.27 0.22 0.39 16 27 C -0.11 -0.10 9.70 22.27 0.22 0.11 16 28 C -0.15 0.28 7.61 31.12 0.24 0.52 16 29 C -0.05 -0.34 9.80 21.72 0.21 -0.13 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 32 H 0.09 -0.04 6.41 -2.38 -0.02 -0.05 16 33 H 0.11 -0.90 7.96 -2.39 -0.02 -0.91 16 34 H 0.41 -6.16 8.74 -74.06 -0.65 -6.81 16 35 H -0.26 0.09 7.11 99.48 0.71 0.79 16 36 H -0.29 -1.42 7.11 99.48 0.71 -0.71 16 37 H 0.40 0.29 6.30 -92.71 -0.58 -0.30 16 38 H 0.14 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H 0.08 -0.19 8.13 -2.39 -0.02 -0.21 16 40 H 0.41 -0.61 7.93 -92.71 -0.74 -1.34 16 41 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 42 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 43 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 44 H 0.14 -0.64 8.06 -2.91 -0.02 -0.66 16 45 H 0.15 -0.95 8.06 -2.91 -0.02 -0.97 16 46 H 0.15 -0.86 8.06 -2.91 -0.02 -0.89 16 47 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 48 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 49 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 50 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 Total: 0.00 -24.57 433.17 -1.09 -25.66 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: -0.92 Total: -12.51 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.25 Total: 11.90 kcal Atomic # 7 Polarization: -2.46 SS G_CDS: -4.67 Total: -7.13 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.78 Total: -16.53 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.15 Total: -0.88 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -1.12 Total: -0.51 kcal Total: -24.57 -1.09 -25.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_6739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.203 kcal (2) G-P(sol) polarization free energy of solvation -24.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds