Wall clock time and date at job start Tue Mar 9 2021 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00114 * 2 1 4 4 O 1.20830 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00297 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.84568 * 48.80543 * 5 3 2 7 7 C 1.53778 * 113.61660 * 180.02562 * 5 3 2 8 8 C 1.53773 * 87.08285 * 140.06450 * 7 5 3 9 9 H 1.09001 * 113.61464 * 89.19851 * 8 7 5 10 10 N 1.46498 * 113.61619 * 220.01775 * 8 7 5 11 11 C 1.46505 * 120.00024 * 53.86773 * 10 8 7 12 12 C 1.34777 * 120.00423 * 233.86575 * 10 8 7 13 13 O 1.21284 * 119.99808 * 0.02562 * 12 10 8 14 14 C 1.50699 * 120.00227 * 180.02562 * 12 10 8 15 15 C 1.53004 * 109.46743 * 180.02562 * 14 12 10 16 16 O 1.42904 * 109.46731 * 179.97438 * 15 14 12 17 17 C 1.35900 * 117.00026 * 179.97438 * 16 15 14 18 18 C 1.38711 * 120.05872 * 179.73213 * 17 16 15 19 19 C 1.38159 * 119.94558 * 179.77009 * 18 17 16 20 20 C 1.50704 * 119.97301 * 180.22860 * 19 18 17 21 21 O 1.42900 * 109.46775 * 65.25270 * 20 19 18 22 22 Si 1.86300 * 109.46950 * 185.25136 * 20 19 18 23 23 C 1.38249 * 120.05837 * 0.47816 * 19 18 17 24 24 C 1.38288 * 120.10725 * 359.77155 * 23 19 18 25 25 C 1.38130 * 120.05818 * 0.02562 * 24 23 19 26 26 C 1.53786 * 87.17342 * 334.61009 * 8 7 5 27 27 H 1.09000 * 109.47118 * 299.99834 * 1 2 3 28 28 H 1.08997 * 109.47087 * 60.00114 * 1 2 3 29 29 H 1.09001 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09007 * 113.61072 * 25.51624 * 7 5 3 31 31 H 1.08999 * 113.61623 * 254.61694 * 7 5 3 32 32 H 1.08993 * 109.46935 * 265.69532 * 11 10 8 33 33 H 1.09003 * 109.46883 * 25.69513 * 11 10 8 34 34 H 1.09001 * 109.47407 * 145.69345 * 11 10 8 35 35 H 1.08999 * 109.47197 * 299.99847 * 14 12 10 36 36 H 1.08997 * 109.46932 * 60.00364 * 14 12 10 37 37 H 1.08999 * 109.47547 * 299.99541 * 15 14 12 38 38 H 1.08997 * 109.47146 * 60.00451 * 15 14 12 39 39 H 1.08006 * 120.02226 * 359.97438 * 18 17 16 40 40 H 1.08996 * 109.47126 * 305.25378 * 20 19 18 41 41 H 0.96700 * 114.00135 * 60.00086 * 21 20 19 42 42 H 1.48508 * 109.99845 * 180.02562 * 22 20 19 43 43 H 1.48506 * 110.00126 * 301.31681 * 22 20 19 44 44 H 1.07997 * 119.94545 * 179.74994 * 23 19 18 45 45 H 1.08000 * 119.97532 * 179.97438 * 24 23 19 46 46 H 1.07995 * 120.02570 * 179.97438 * 25 24 23 47 47 H 1.08999 * 113.61191 * 139.93984 * 26 8 7 48 48 H 1.08999 * 113.61091 * 270.84107 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1077 2.7142 0.0011 8 6 5.1820 2.2261 0.9873 9 1 6.0819 1.8491 0.5012 10 7 5.4721 3.1815 2.0592 11 6 4.3841 3.7021 2.8908 12 6 6.7400 3.5816 2.2805 13 8 7.6407 3.1510 1.5918 14 6 7.0385 4.5640 3.3836 15 6 8.5414 4.8484 3.4203 16 8 8.8244 5.7804 4.4659 17 6 10.1234 6.1420 4.6353 18 6 10.4689 7.0471 5.6280 19 6 11.7908 7.4095 5.8012 20 6 12.1675 8.3889 6.8829 21 8 11.8957 7.8133 8.1623 22 14 13.9827 8.7880 6.7545 23 6 12.7678 6.8783 4.9798 24 6 12.4253 5.9797 3.9860 25 6 11.1056 5.6110 3.8115 26 6 4.1945 1.1209 1.3976 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.4176 3.4401 0.4313 31 1 4.5098 3.0298 -0.9616 32 1 4.0347 4.6495 2.4806 33 1 3.5621 2.9863 2.9035 34 1 4.7460 3.8577 3.9072 35 1 6.4978 5.4923 3.1996 36 1 6.7244 4.1438 4.3391 37 1 9.0825 3.9203 3.6041 38 1 8.8550 5.2688 2.4648 39 1 9.7055 7.4658 6.2671 40 1 11.5853 9.3026 6.7645 41 1 12.3808 6.9951 8.3366 42 1 14.3670 9.7526 7.8162 43 1 14.7863 7.5457 6.8826 44 1 13.8000 7.1659 5.1142 45 1 13.1901 5.5664 3.3453 46 1 10.8386 4.9095 3.0350 47 1 4.6667 0.1521 1.5608 48 1 3.5283 1.4104 2.2103 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109654_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:44:50 Heat of formation + Delta-G solvation = -122.270523 kcal Electronic energy + Delta-G solvation = -29824.818521 eV Core-core repulsion = 25427.513707 eV Total energy + Delta-G solvation = -4397.304814 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.13472 -41.41236 -40.98820 -39.46535 -39.01165 -37.49279 -37.37702 -35.68526 -33.25033 -32.49207 -30.87439 -29.50092 -28.14050 -27.33648 -26.90870 -26.73102 -25.19393 -23.69338 -22.67310 -21.90208 -20.68509 -20.12547 -19.39328 -18.93288 -18.27523 -18.04314 -17.68039 -17.60499 -17.45919 -17.14293 -16.88634 -16.54222 -16.43294 -16.13331 -16.08970 -15.52585 -14.91796 -14.79574 -14.66906 -14.44597 -14.32813 -14.25274 -14.12844 -13.93343 -13.63697 -13.47574 -13.20934 -13.10114 -12.99354 -12.90512 -12.84101 -12.50621 -12.35351 -12.22199 -11.95632 -11.86477 -11.82430 -11.76846 -11.56385 -11.43424 -11.01565 -10.65283 -9.95835 -9.76505 -9.28026 -4.89828 0.19323 0.38856 1.03254 1.29651 1.42191 1.51392 1.62096 1.78452 1.96427 2.32327 2.65266 3.17782 3.30695 3.41423 3.46992 3.61147 3.63083 3.72619 3.77741 3.85426 3.88397 3.99752 4.08787 4.14651 4.22669 4.25319 4.26213 4.27779 4.35526 4.48665 4.50177 4.53390 4.54590 4.59227 4.63291 4.67955 4.68604 4.74324 4.77850 4.87319 4.93990 4.97657 5.11814 5.25508 5.31102 5.37501 5.43628 5.44135 5.69868 6.21465 6.33164 6.47299 6.62949 6.97304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.105 4.105 6 H 0.150 0.850 7 C -0.129 4.129 8 C 0.120 3.880 9 H 0.120 0.880 10 N -0.600 5.600 11 C 0.062 3.938 12 C 0.521 3.479 13 O -0.578 6.578 14 C -0.133 4.133 15 C 0.075 3.925 16 O -0.324 6.324 17 C 0.117 3.883 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.087 4.087 21 O -0.548 6.548 22 Si 0.776 3.224 23 C -0.158 4.158 24 C -0.075 4.075 25 C -0.210 4.210 26 C -0.123 4.123 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.386 0.614 42 H -0.302 1.302 43 H -0.280 1.280 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.137 0.863 47 H 0.103 0.897 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -2.183 -1.281 2.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.426 6.426 5 C -0.124 4.124 6 H 0.168 0.832 7 C -0.168 4.168 8 C 0.016 3.984 9 H 0.138 0.862 10 N -0.331 5.331 11 C -0.080 4.080 12 C 0.311 3.689 13 O -0.458 6.458 14 C -0.172 4.172 15 C 0.000 4.000 16 O -0.238 6.238 17 C 0.072 3.928 18 C -0.159 4.159 19 C -0.082 4.082 20 C -0.195 4.195 21 O -0.356 6.356 22 Si 0.681 3.319 23 C -0.176 4.176 24 C -0.093 4.093 25 C -0.229 4.229 26 C -0.162 4.162 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.235 0.765 42 H -0.231 1.231 43 H -0.206 1.206 44 H 0.164 0.836 45 H 0.170 0.830 46 H 0.155 0.845 47 H 0.121 0.879 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.041 -1.575 -1.090 2.180 hybrid contribution -0.843 -1.001 0.456 1.386 sum -1.884 -2.576 -0.633 3.253 Atomic orbital electron populations 1.23529 0.75004 1.05608 1.02477 1.86521 1.24775 1.33119 1.83457 1.23942 0.92397 0.81032 0.71019 1.90672 1.67833 1.37388 1.46670 1.22439 0.86068 1.01286 1.02615 0.83227 1.23414 0.97288 0.94883 1.01175 1.22546 0.97926 0.89577 0.88329 0.86167 1.47809 1.07147 1.44230 1.33961 1.22136 0.90009 1.00280 0.95557 1.20629 0.82196 0.81538 0.84563 1.90719 1.45896 1.58511 1.50675 1.21486 0.95637 1.00664 0.99401 1.22437 0.96293 0.91868 0.89418 1.85952 1.23559 1.60737 1.53594 1.19146 0.83145 0.95124 0.95428 1.20334 0.96828 0.99871 0.98881 1.20151 0.92733 0.98023 0.97270 1.25343 1.14944 0.97563 0.81649 1.86576 1.70301 1.44802 1.33952 0.93867 0.71320 0.79384 0.87365 1.21207 0.99582 0.99528 0.97278 1.21243 0.95726 0.95461 0.96888 1.21557 0.94060 1.04804 1.02451 1.23431 0.97342 1.00820 0.94565 0.91878 0.92122 0.85412 0.88796 0.89453 0.91216 0.89866 0.88639 0.85876 0.85647 0.91598 0.91552 0.85410 0.85737 0.76452 1.23062 1.20638 0.83623 0.83000 0.84523 0.87895 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.50 10.56 -51.38 -0.54 -1.04 16 3 C 0.47 1.05 7.49 71.24 0.53 1.59 16 4 O -0.54 -4.40 15.65 21.95 0.34 -4.06 16 5 C -0.10 0.37 4.26 -10.95 -0.05 0.32 16 6 H 0.15 -1.09 8.14 -2.39 -0.02 -1.11 16 7 C -0.13 0.30 7.00 31.12 0.22 0.52 16 8 C 0.12 -0.30 4.23 45.52 0.19 -0.11 16 9 H 0.12 -0.01 7.17 -2.39 -0.02 -0.03 16 10 N -0.60 1.46 3.09 -819.64 -2.53 -1.07 16 11 C 0.06 -0.47 9.17 127.77 1.17 0.70 16 12 C 0.52 0.72 7.67 87.66 0.67 1.39 16 13 O -0.58 -5.23 15.44 -3.04 -0.05 -5.28 16 14 C -0.13 0.41 4.68 29.85 0.14 0.55 16 15 C 0.08 0.11 4.03 71.98 0.29 0.40 16 16 O -0.32 -1.49 10.14 -92.42 -0.94 -2.43 16 17 C 0.12 0.62 6.69 22.51 0.15 0.77 16 18 C -0.14 -0.69 9.63 22.36 0.22 -0.47 16 19 C -0.08 -0.16 5.35 -19.88 -0.11 -0.27 16 20 C -0.09 -0.05 2.80 71.24 0.20 0.15 16 21 O -0.55 -2.09 12.84 -148.98 -1.91 -4.00 16 22 Si 0.78 -1.34 29.88 68.60 2.05 0.71 16 23 C -0.16 0.01 8.67 22.28 0.19 0.20 16 24 C -0.08 -0.02 10.04 22.26 0.22 0.20 16 25 C -0.21 -0.63 9.04 22.37 0.20 -0.42 16 26 C -0.12 0.66 7.14 31.18 0.22 0.88 16 27 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 28 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 29 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.09 -0.02 6.76 -2.38 -0.02 -0.03 16 31 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.08 -0.68 5.79 -2.39 -0.01 -0.69 16 34 H 0.10 -1.05 6.62 -2.39 -0.02 -1.07 16 35 H 0.12 -0.74 8.11 -2.39 -0.02 -0.76 16 36 H 0.13 -0.84 7.41 -2.39 -0.02 -0.85 16 37 H 0.07 0.17 7.62 -2.39 -0.02 0.15 16 38 H 0.07 0.17 7.62 -2.39 -0.02 0.15 16 39 H 0.13 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.12 -0.11 7.96 -2.39 -0.02 -0.13 16 41 H 0.39 -0.72 8.70 -74.06 -0.64 -1.36 16 42 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 43 H -0.28 -0.43 7.01 99.48 0.70 0.27 16 44 H 0.15 -0.61 4.83 -2.91 -0.01 -0.62 16 45 H 0.15 -0.70 8.06 -2.91 -0.02 -0.73 16 46 H 0.14 0.19 6.30 -2.91 -0.02 0.18 16 47 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.10 -0.57 5.94 -2.39 -0.01 -0.58 16 Total: 0.00 -22.57 394.06 2.47 -20.11 By element: Atomic # 1 Polarization: -10.84 SS G_CDS: 0.38 Total: -10.47 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.67 Total: 7.54 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -2.53 Total: -1.07 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -3.10 Total: -16.81 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.05 Total: 0.71 kcal Total: -22.57 2.47 -20.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.163 kcal (2) G-P(sol) polarization free energy of solvation -22.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds