Wall clock time and date at job start Tue Mar 9 2021 14:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99799 * 2 1 4 4 O 1.20828 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99974 * 180.02562 * 3 2 1 6 6 H 1.09005 * 112.90569 * 48.74560 * 5 3 2 7 7 C 1.53782 * 113.61291 * 179.97438 * 5 3 2 8 8 C 1.53785 * 87.07789 * 139.98079 * 7 5 3 9 9 H 1.08999 * 113.61257 * 89.19930 * 8 7 5 10 10 N 1.46501 * 113.61456 * 220.01570 * 8 7 5 11 11 C 1.46502 * 119.99813 * 53.87603 * 10 8 7 12 12 C 1.34768 * 120.00182 * 233.87359 * 10 8 7 13 13 O 1.21286 * 120.00188 * 0.02562 * 12 10 8 14 14 C 1.50706 * 119.99921 * 179.97438 * 12 10 8 15 15 C 1.53007 * 109.46761 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.46631 * 179.97438 * 15 14 12 17 17 O 1.42900 * 109.47033 * 180.02562 * 16 15 14 18 18 C 1.35903 * 117.00080 * 180.02562 * 17 16 15 19 19 C 1.38710 * 120.05465 * 180.25139 * 18 17 16 20 20 C 1.38162 * 119.94241 * 180.20977 * 19 18 17 21 21 C 1.50704 * 119.97308 * 179.79227 * 20 19 18 22 22 O 1.42897 * 109.47008 * 299.72317 * 21 20 19 23 23 Si 1.86297 * 109.46999 * 179.72420 * 21 20 19 24 24 C 1.38247 * 120.05533 * 359.51487 * 20 19 18 25 25 C 1.38289 * 120.11264 * 0.27749 * 24 20 19 26 26 C 1.38125 * 120.05282 * 359.95462 * 25 24 20 27 27 C 1.53776 * 87.08242 * 334.56869 * 8 7 5 28 28 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47059 * 299.99957 * 1 2 3 30 30 H 1.08995 * 109.47324 * 60.00176 * 1 2 3 31 31 H 1.08996 * 113.61474 * 25.43664 * 7 5 3 32 32 H 1.08998 * 113.61493 * 254.53025 * 7 5 3 33 33 H 1.09007 * 109.46762 * 265.82391 * 11 10 8 34 34 H 1.09000 * 109.47301 * 25.81763 * 11 10 8 35 35 H 1.08994 * 109.47604 * 145.82423 * 11 10 8 36 36 H 1.09004 * 109.46821 * 60.00210 * 14 12 10 37 37 H 1.08999 * 109.47313 * 300.00390 * 14 12 10 38 38 H 1.09000 * 109.46637 * 60.00533 * 15 14 12 39 39 H 1.08997 * 109.47190 * 300.00338 * 15 14 12 40 40 H 1.09004 * 109.46798 * 60.00528 * 16 15 14 41 41 H 1.08999 * 109.47466 * 300.00628 * 16 15 14 42 42 H 1.08004 * 120.02955 * 359.97438 * 19 18 17 43 43 H 1.08999 * 109.46661 * 59.72578 * 21 20 19 44 44 H 0.96692 * 114.00181 * 300.00113 * 22 21 20 45 45 H 1.48500 * 109.99804 * 180.02562 * 23 21 20 46 46 H 1.48501 * 110.00319 * 301.31620 * 23 21 20 47 47 H 1.08002 * 119.94512 * 180.25169 * 24 20 19 48 48 H 1.07995 * 119.97430 * 179.97438 * 25 24 20 49 49 H 1.07997 * 120.02466 * 180.02562 * 26 25 24 50 50 H 1.08999 * 113.61991 * 139.98343 * 27 8 7 51 51 H 1.09010 * 113.61390 * 270.88433 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0244 0.6361 -0.7558 7 6 4.1077 2.7143 -0.0011 8 6 5.1814 2.2271 0.9862 9 1 6.0815 1.8497 0.5011 10 7 5.4709 3.1836 2.0574 11 6 4.3823 3.7048 2.8879 12 6 6.7385 3.5840 2.2790 13 8 7.6396 3.1528 1.5912 14 6 7.0361 4.5684 3.3806 15 6 8.5392 4.8518 3.4188 16 6 8.8413 5.8517 4.5368 17 8 10.2450 6.1170 4.5722 18 6 10.6842 6.9910 5.5157 19 6 12.0340 7.2984 5.6032 20 6 12.4785 8.1839 6.5661 21 6 13.9455 8.5148 6.6648 22 8 14.6860 7.3220 6.9311 23 14 14.2152 9.7347 8.0468 24 6 11.5781 8.7710 7.4354 25 6 10.2313 8.4695 7.3474 26 6 9.7825 7.5812 6.3896 27 6 4.1917 1.1239 1.3962 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.4174 3.4406 0.4279 32 1 4.5104 3.0290 -0.9639 33 1 4.0314 4.6508 2.4752 34 1 3.5613 2.9881 2.9026 35 1 4.7442 3.8636 3.9037 36 1 6.7212 4.1499 4.3366 37 1 6.4956 5.4964 3.1945 38 1 8.8544 5.2701 2.4629 39 1 9.0794 3.9236 3.6051 40 1 8.5260 5.4338 5.4929 41 1 8.3011 6.7798 4.3500 42 1 12.7374 6.8430 4.9217 43 1 14.2837 8.9503 5.7246 44 1 14.4371 6.8801 7.7543 45 1 15.6579 10.0696 8.1542 46 1 13.4253 10.9673 7.7977 47 1 11.9270 9.4661 8.1847 48 1 9.5299 8.9291 8.0278 49 1 8.7306 7.3463 6.3210 50 1 4.6620 0.1546 1.5615 51 1 3.5242 1.4154 2.2072 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109654_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:44:53 Heat of formation + Delta-G solvation = -129.952205 kcal Electronic energy + Delta-G solvation = -31375.662894 eV Core-core repulsion = 26822.487358 eV Total energy + Delta-G solvation = -4553.175536 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.11976 -41.30097 -41.02530 -39.40473 -39.08769 -37.48847 -37.29021 -35.65270 -34.80716 -32.43906 -31.25796 -29.65917 -28.51128 -28.07950 -26.98146 -26.84629 -26.37237 -23.84424 -23.59929 -22.34105 -21.80302 -20.65545 -20.10517 -19.14769 -18.95197 -18.25907 -17.87219 -17.79666 -17.54681 -17.46236 -17.17109 -16.86621 -16.63522 -16.48479 -16.14653 -16.13198 -15.37532 -15.05638 -15.02600 -14.76082 -14.42725 -14.34707 -14.19672 -14.17477 -14.07861 -13.66631 -13.52006 -13.28131 -13.20996 -13.11545 -13.00247 -12.92707 -12.71619 -12.43570 -12.32078 -12.23873 -12.20972 -11.96841 -11.86399 -11.76703 -11.61493 -11.58029 -11.43064 -10.90151 -10.50181 -9.90535 -9.71042 -9.23540 -4.98687 0.22552 0.41742 1.03149 1.30200 1.52794 1.60043 1.65223 1.89993 1.97833 2.29009 2.69611 3.17799 3.30983 3.46966 3.53070 3.62507 3.67508 3.72381 3.84713 3.87256 3.96736 3.97954 4.10266 4.14414 4.20173 4.25480 4.25952 4.28003 4.34526 4.36389 4.40867 4.48386 4.51111 4.54225 4.55847 4.62124 4.65451 4.68066 4.69066 4.77278 4.87278 4.95964 4.99672 5.00973 5.12726 5.16683 5.29799 5.30997 5.39664 5.46296 5.49629 5.75719 6.31095 6.43960 6.62734 6.74984 7.09373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.105 4.105 6 H 0.148 0.852 7 C -0.129 4.129 8 C 0.118 3.882 9 H 0.114 0.886 10 N -0.604 5.604 11 C 0.063 3.937 12 C 0.509 3.491 13 O -0.586 6.586 14 C -0.127 4.127 15 C -0.101 4.101 16 C 0.059 3.941 17 O -0.339 6.339 18 C 0.116 3.884 19 C -0.153 4.153 20 C -0.085 4.085 21 C -0.084 4.084 22 O -0.558 6.558 23 Si 0.793 3.207 24 C -0.161 4.161 25 C -0.072 4.072 26 C -0.206 4.206 27 C -0.122 4.122 28 H 0.128 0.872 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.395 0.605 45 H -0.300 1.300 46 H -0.281 1.281 47 H 0.148 0.852 48 H 0.160 0.840 49 H 0.154 0.846 50 H 0.100 0.900 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -0.875 7.020 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.165 0.835 7 C -0.167 4.167 8 C 0.014 3.986 9 H 0.132 0.868 10 N -0.335 5.335 11 C -0.079 4.079 12 C 0.299 3.701 13 O -0.466 6.466 14 C -0.166 4.166 15 C -0.139 4.139 16 C -0.016 4.016 17 O -0.254 6.254 18 C 0.071 3.929 19 C -0.172 4.172 20 C -0.085 4.085 21 C -0.193 4.193 22 O -0.366 6.366 23 Si 0.698 3.302 24 C -0.178 4.178 25 C -0.090 4.090 26 C -0.224 4.224 27 C -0.160 4.160 28 H 0.146 0.854 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.245 0.755 45 H -0.229 1.229 46 H -0.208 1.208 47 H 0.165 0.835 48 H 0.177 0.823 49 H 0.171 0.829 50 H 0.119 0.881 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.673 0.013 6.179 9.094 hybrid contribution -0.407 -0.184 -1.302 1.377 sum -7.080 -0.171 4.876 8.598 Atomic orbital electron populations 1.23533 0.74964 1.05611 1.02507 1.86526 1.24811 1.33092 1.83452 1.23907 0.92322 0.81051 0.71023 1.90667 1.67800 1.37359 1.46673 1.22406 0.86173 1.01266 1.02628 0.83453 1.23412 0.97342 0.94903 1.01072 1.22484 0.97645 0.89835 0.88630 0.86808 1.47885 1.07454 1.44222 1.33983 1.22133 0.89873 1.00107 0.95745 1.21218 0.81787 0.81905 0.85146 1.90721 1.46219 1.58675 1.50973 1.21586 0.96297 0.99983 0.98713 1.21157 0.95678 0.98959 0.98147 1.22985 0.78517 0.99797 1.00288 1.86055 1.27554 1.59498 1.52251 1.19203 0.93540 0.90670 0.89488 1.20315 0.93182 1.02077 1.01578 1.20212 0.96318 0.96628 0.95365 1.25392 0.88388 0.95799 1.09725 1.86468 1.62136 1.40063 1.47892 0.93516 0.76737 0.76026 0.83889 1.21191 0.93857 1.02335 1.00435 1.21314 0.95714 0.95140 0.96816 1.21605 1.00546 1.01839 0.98429 1.23386 0.97332 1.00752 0.94548 0.85429 0.91772 0.92156 0.88635 0.89801 0.91323 0.90167 0.88109 0.85280 0.85792 0.92352 0.91975 0.89593 0.90025 0.86754 0.88102 0.75462 1.22881 1.20807 0.83480 0.82273 0.82862 0.88108 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.55 10.57 -51.40 -0.54 -1.09 16 3 C 0.47 1.15 7.48 71.24 0.53 1.69 16 4 O -0.54 -4.38 15.65 21.96 0.34 -4.04 16 5 C -0.11 0.30 4.26 -11.01 -0.05 0.25 16 6 H 0.15 -0.91 8.14 -2.38 -0.02 -0.93 16 7 C -0.13 0.20 6.99 31.12 0.22 0.42 16 8 C 0.12 -0.17 4.24 45.52 0.19 0.02 16 9 H 0.11 0.23 7.17 -2.39 -0.02 0.22 16 10 N -0.60 1.40 3.09 -819.64 -2.53 -1.13 16 11 C 0.06 -0.56 9.17 127.77 1.17 0.61 16 12 C 0.51 0.98 7.67 87.66 0.67 1.66 16 13 O -0.59 -6.98 15.44 -3.05 -0.05 -7.03 16 14 C -0.13 0.75 4.31 29.85 0.13 0.88 16 15 C -0.10 -0.02 4.87 30.60 0.15 0.13 16 16 C 0.06 -0.14 4.74 71.98 0.34 0.20 16 17 O -0.34 -2.08 10.14 -92.45 -0.94 -3.02 16 18 C 0.12 0.57 6.69 22.51 0.15 0.72 16 19 C -0.15 -1.01 9.56 22.36 0.21 -0.80 16 20 C -0.08 -0.22 5.39 -19.88 -0.11 -0.33 16 21 C -0.08 -0.16 2.82 71.24 0.20 0.04 16 22 O -0.56 -1.72 12.77 -148.98 -1.90 -3.62 16 23 Si 0.79 -1.39 29.79 68.60 2.04 0.65 16 24 C -0.16 0.21 8.67 22.28 0.19 0.40 16 25 C -0.07 0.21 10.04 22.25 0.22 0.43 16 26 C -0.21 0.17 9.04 22.37 0.20 0.38 16 27 C -0.12 0.58 7.12 31.12 0.22 0.81 16 28 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 29 H 0.06 -0.15 8.13 -2.39 -0.02 -0.17 16 30 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 31 H 0.10 0.01 6.75 -2.39 -0.02 -0.01 16 32 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.07 -0.65 8.14 -2.38 -0.02 -0.67 16 34 H 0.08 -0.73 5.78 -2.39 -0.01 -0.74 16 35 H 0.10 -1.39 6.61 -2.39 -0.02 -1.40 16 36 H 0.13 -1.53 7.41 -2.38 -0.02 -1.55 16 37 H 0.12 -1.33 8.11 -2.39 -0.02 -1.35 16 38 H 0.06 0.29 8.10 -2.39 -0.02 0.27 16 39 H 0.06 0.27 8.10 -2.39 -0.02 0.25 16 40 H 0.09 -0.58 7.66 -2.38 -0.02 -0.60 16 41 H 0.08 -0.49 7.66 -2.39 -0.02 -0.51 16 42 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 44 H 0.40 -2.15 8.70 -74.06 -0.64 -2.80 16 45 H -0.30 -1.75 7.11 99.48 0.71 -1.04 16 46 H -0.28 -0.59 7.11 99.48 0.71 0.11 16 47 H 0.15 -0.86 4.87 -2.91 -0.01 -0.88 16 48 H 0.16 -1.42 8.06 -2.91 -0.02 -1.44 16 49 H 0.15 -0.99 6.30 -2.91 -0.02 -1.01 16 50 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 51 H 0.10 -0.58 5.93 -2.38 -0.01 -0.60 16 Total: 0.00 -28.57 415.48 2.63 -25.94 By element: Atomic # 1 Polarization: -15.65 SS G_CDS: 0.35 Total: -15.30 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.86 Total: 8.63 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -2.53 Total: -1.13 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -3.09 Total: -18.80 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.65 kcal Total: -28.57 2.63 -25.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.008 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds