Wall clock time and date at job start Tue Mar 9 2021 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00155 * 2 1 4 4 O 1.20824 * 119.99873 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00143 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.84418 * 311.19449 * 5 3 2 7 7 C 1.53947 * 113.66854 * 82.44331 * 5 3 2 8 8 C 1.53783 * 87.02064 * 139.93346 * 7 5 3 9 9 H 1.08995 * 113.60955 * 89.23031 * 8 7 5 10 10 N 1.46495 * 113.61172 * 220.04952 * 8 7 5 11 11 C 1.46492 * 120.00347 * 39.13465 * 10 8 7 12 12 C 1.34776 * 119.99759 * 219.13683 * 10 8 7 13 13 O 1.21286 * 119.99797 * 0.02562 * 12 10 8 14 14 C 1.50697 * 120.00270 * 179.97438 * 12 10 8 15 15 O 1.42897 * 109.47593 * 179.97438 * 14 12 10 16 16 C 1.35902 * 117.00348 * 180.02562 * 15 14 12 17 17 C 1.38717 * 120.05576 * 180.25200 * 16 15 14 18 18 C 1.38165 * 119.94198 * 180.24842 * 17 16 15 19 19 C 1.50699 * 119.97216 * 179.74695 * 18 17 16 20 20 O 1.42901 * 109.46830 * 299.72675 * 19 18 17 21 21 Si 1.86298 * 109.46950 * 179.73112 * 19 18 17 22 22 C 1.38252 * 120.05599 * 359.47653 * 18 17 16 23 23 C 1.38290 * 120.10941 * 0.27260 * 22 18 17 24 24 C 1.38121 * 120.05545 * 359.97438 * 23 22 18 25 25 C 1.53774 * 113.61497 * 180.02562 * 5 3 2 26 26 H 1.09007 * 109.47078 * 59.99758 * 1 2 3 27 27 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47231 * 300.00002 * 1 2 3 29 29 H 1.09000 * 113.61340 * 25.40846 * 7 5 3 30 30 H 1.09003 * 113.66452 * 254.46428 * 7 5 3 31 31 H 1.09000 * 109.47653 * 270.00017 * 11 10 8 32 32 H 1.09001 * 109.47359 * 30.00094 * 11 10 8 33 33 H 1.09004 * 109.47555 * 150.00250 * 11 10 8 34 34 H 1.08999 * 109.46921 * 59.99772 * 14 12 10 35 35 H 1.09001 * 109.47028 * 300.00141 * 14 12 10 36 36 H 1.07994 * 120.02737 * 359.97438 * 17 16 15 37 37 H 1.08991 * 109.47351 * 59.72823 * 19 18 17 38 38 H 0.96708 * 114.00246 * 299.99864 * 20 19 18 39 39 H 1.48506 * 109.99834 * 180.02562 * 21 19 18 40 40 H 1.48502 * 110.00011 * 301.31529 * 21 19 18 41 41 H 1.07993 * 119.94280 * 180.25239 * 22 18 17 42 42 H 1.07996 * 119.97320 * 179.97438 * 23 22 18 43 43 H 1.08006 * 120.02488 * 180.02562 * 24 23 22 44 44 H 1.09004 * 113.61719 * 105.46759 * 25 5 3 45 45 H 1.09006 * 113.61678 * 334.56943 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1927 1.1223 -1.3986 8 6 5.1808 2.2271 -0.9885 9 1 6.0812 1.8495 -0.5041 10 7 5.4694 3.1835 -2.0599 11 6 4.3971 3.6277 -2.9538 12 6 6.7214 3.6548 -2.2233 13 8 7.6092 3.2867 -1.4835 14 6 7.0185 4.6382 -3.3258 15 8 8.4042 4.9860 -3.2934 16 6 8.8404 5.8705 -4.2284 17 6 10.1748 6.2483 -4.2582 18 6 10.6147 7.1517 -5.2066 19 6 12.0630 7.5670 -5.2360 20 8 12.4072 8.1828 -3.9933 21 14 12.3335 8.7784 -6.6253 22 6 9.7285 7.6706 -6.1322 23 6 8.3988 7.2915 -6.1078 24 6 7.9530 6.3927 -5.1585 25 6 4.1078 2.7141 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.5253 1.4126 -2.2101 30 1 4.6645 0.1536 -1.5633 31 1 4.3407 2.9600 -3.8135 32 1 3.4477 3.6117 -2.4185 33 1 4.6049 4.6420 -3.2947 34 1 6.4158 5.5354 -3.1845 35 1 6.7790 4.1876 -4.2889 36 1 10.8682 5.8402 -3.5380 37 1 12.6897 6.6891 -5.3923 38 1 11.8880 8.9726 -3.7885 39 1 13.7583 9.1953 -6.6654 40 1 11.9490 8.1607 -7.9198 41 1 10.0751 8.3735 -6.8752 42 1 7.7083 7.6986 -6.8316 43 1 6.9145 6.0966 -5.1402 44 1 4.5113 3.0285 0.9627 45 1 3.4172 3.4407 -0.4280 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109654_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:45:27 Heat of formation + Delta-G solvation = -115.844669 kcal Electronic energy + Delta-G solvation = -28285.489370 eV Core-core repulsion = 24044.000820 eV Total energy + Delta-G solvation = -4241.488549 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16790 -41.54781 -40.84450 -39.48798 -38.75095 -37.48398 -37.22174 -35.75583 -32.46647 -31.72415 -29.98375 -29.05688 -28.15144 -26.97914 -26.85172 -26.39422 -23.67285 -23.19345 -22.10839 -20.80432 -20.20028 -19.46851 -18.89157 -18.32882 -18.06685 -17.64688 -17.52193 -17.45171 -17.28776 -16.97780 -16.32161 -16.28092 -16.10821 -15.88744 -15.33364 -14.98852 -14.70919 -14.43782 -14.34446 -14.23098 -14.19305 -13.99841 -13.71039 -13.45867 -13.32713 -13.22582 -12.97777 -12.93057 -12.62036 -12.52594 -12.25620 -12.13397 -11.99700 -11.85894 -11.77942 -11.67394 -11.44451 -10.97926 -10.50803 -9.92238 -9.81975 -9.29235 -4.98495 0.20439 0.38715 1.02988 1.25735 1.32690 1.36676 1.65337 1.74205 1.97362 2.42409 2.67309 3.13842 3.27241 3.33701 3.51882 3.59672 3.67135 3.71370 3.78829 3.93448 3.99186 3.99802 4.11854 4.17107 4.24562 4.25990 4.28592 4.34468 4.45371 4.48109 4.50263 4.57172 4.58458 4.62720 4.68791 4.74429 4.86159 4.89326 4.97986 5.08259 5.23975 5.30711 5.36601 5.39720 5.44836 5.69458 6.11423 6.33566 6.63015 6.74634 6.92739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.105 4.105 6 H 0.148 0.852 7 C -0.117 4.117 8 C 0.119 3.881 9 H 0.114 0.886 10 N -0.596 5.596 11 C 0.057 3.943 12 C 0.512 3.488 13 O -0.570 6.570 14 C 0.041 3.959 15 O -0.324 6.324 16 C 0.113 3.887 17 C -0.150 4.150 18 C -0.084 4.084 19 C -0.087 4.087 20 O -0.558 6.558 21 Si 0.796 3.204 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.202 4.202 25 C -0.130 4.130 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.395 0.605 39 H -0.302 1.302 40 H -0.279 1.279 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.084 0.916 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 1.423 -5.079 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.425 6.425 5 C -0.125 4.125 6 H 0.166 0.834 7 C -0.156 4.156 8 C 0.016 3.984 9 H 0.132 0.868 10 N -0.329 5.329 11 C -0.084 4.084 12 C 0.301 3.699 13 O -0.449 6.449 14 C -0.037 4.037 15 O -0.237 6.237 16 C 0.068 3.932 17 C -0.169 4.169 18 C -0.085 4.085 19 C -0.195 4.195 20 O -0.366 6.366 21 Si 0.701 3.299 22 C -0.175 4.175 23 C -0.087 4.087 24 C -0.221 4.221 25 C -0.168 4.168 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.245 0.755 39 H -0.230 1.230 40 H -0.206 1.206 41 H 0.167 0.833 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.103 0.897 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.836 1.086 -5.258 8.693 hybrid contribution -0.220 -0.843 0.676 1.103 sum -7.056 0.243 -4.582 8.417 Atomic orbital electron populations 1.23536 0.74949 1.05612 1.02521 1.86525 1.24817 1.33102 1.83449 1.23875 0.92275 0.81053 0.71028 1.90667 1.67788 1.37343 1.46664 1.22422 0.86240 1.01167 1.02638 0.83406 1.23382 0.97014 1.00556 0.94613 1.22551 0.97877 0.89700 0.88311 0.86798 1.47742 1.08183 1.44145 1.32810 1.22240 0.90211 1.02057 0.93914 1.20588 0.82458 0.81789 0.85099 1.90750 1.46563 1.60107 1.47438 1.22771 0.81922 0.99667 0.99337 1.86122 1.26657 1.59131 1.51798 1.19209 0.93788 0.90651 0.89555 1.20283 0.93552 1.01296 1.01726 1.20212 0.96487 0.96369 0.95402 1.25437 0.92898 1.04053 0.97137 1.86478 1.64278 1.47281 1.38609 0.93507 0.79656 0.83573 0.73142 1.21225 0.94114 1.02332 0.99810 1.21339 0.95614 0.94648 0.97091 1.21624 1.00767 1.02164 0.97519 1.23440 0.97275 0.95040 1.01061 0.91744 0.85447 0.92150 0.87991 0.87898 0.89937 0.89939 0.88368 0.85810 0.85840 0.87122 0.88179 0.75458 1.23011 1.20595 0.83317 0.81857 0.82249 0.89703 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.12 16 2 O -0.36 -0.39 10.57 -51.43 -0.54 -0.93 16 3 C 0.47 0.88 7.49 71.24 0.53 1.41 16 4 O -0.54 -4.03 15.65 21.97 0.34 -3.69 16 5 C -0.11 0.36 4.26 -10.96 -0.05 0.31 16 6 H 0.15 -0.99 8.14 -2.39 -0.02 -1.01 16 7 C -0.12 0.65 7.09 31.18 0.22 0.87 16 8 C 0.12 -0.20 4.21 45.53 0.19 -0.01 16 9 H 0.11 0.23 7.21 -2.39 -0.02 0.21 16 10 N -0.60 1.26 3.08 -819.62 -2.53 -1.26 16 11 C 0.06 -0.56 8.84 127.77 1.13 0.57 16 12 C 0.51 2.19 7.75 87.66 0.68 2.87 16 13 O -0.57 -8.73 15.97 15.99 0.26 -8.48 16 14 C 0.04 -0.07 3.77 71.24 0.27 0.20 16 15 O -0.32 -2.49 9.67 -73.41 -0.71 -3.20 16 16 C 0.11 0.53 6.69 22.51 0.15 0.68 16 17 C -0.15 -1.04 9.56 22.37 0.21 -0.83 16 18 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 19 C -0.09 -0.17 2.82 71.24 0.20 0.03 16 20 O -0.56 -1.94 12.77 -148.98 -1.90 -3.84 16 21 Si 0.80 -1.64 29.79 68.60 2.04 0.41 16 22 C -0.16 0.35 8.67 22.29 0.19 0.55 16 23 C -0.07 0.31 10.04 22.25 0.22 0.53 16 24 C -0.20 0.53 9.04 22.36 0.20 0.73 16 25 C -0.13 0.26 6.94 31.13 0.22 0.47 16 26 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 27 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 29 H 0.10 -0.70 6.77 -2.39 -0.02 -0.71 16 30 H 0.10 -0.73 8.14 -2.39 -0.02 -0.74 16 31 H 0.08 -1.04 8.14 -2.39 -0.02 -1.06 16 32 H 0.08 -0.76 6.33 -2.39 -0.02 -0.78 16 33 H 0.10 -1.39 6.44 -2.39 -0.02 -1.41 16 34 H 0.12 -1.00 6.92 -2.39 -0.02 -1.02 16 35 H 0.12 -0.99 7.63 -2.39 -0.02 -1.01 16 36 H 0.11 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.10 0.42 7.96 -2.39 -0.02 0.40 16 38 H 0.40 -2.04 8.70 -74.05 -0.64 -2.68 16 39 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 40 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 41 H 0.15 -1.02 4.87 -2.91 -0.01 -1.04 16 42 H 0.16 -1.78 8.06 -2.91 -0.02 -1.80 16 43 H 0.16 -1.53 6.30 -2.91 -0.02 -1.55 16 44 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.10 -0.08 6.11 -2.38 -0.01 -0.09 16 Total: 0.00 -30.03 373.16 2.85 -27.18 By element: Atomic # 1 Polarization: -15.80 SS G_CDS: 0.42 Total: -15.38 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.47 Total: 9.20 kcal Atomic # 7 Polarization: 1.26 SS G_CDS: -2.53 Total: -1.26 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -2.56 Total: -20.14 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: 2.04 Total: 0.41 kcal Total: -30.03 2.85 -27.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.663 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds