Wall clock time and date at job start Tue Mar 9 2021 14:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99703 * 2 1 4 4 O 1.20825 * 120.00309 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99825 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.90623 * 48.75198 * 5 3 2 7 7 C 1.53784 * 113.61539 * 179.97438 * 5 3 2 8 8 C 1.53780 * 87.07838 * 139.98150 * 7 5 3 9 9 H 1.09009 * 113.61457 * 89.12206 * 8 7 5 10 10 N 1.46498 * 113.61573 * 219.93440 * 8 7 5 11 11 C 1.46499 * 119.99706 * 58.47550 * 10 8 7 12 12 C 1.34777 * 120.00397 * 238.47605 * 10 8 7 13 13 O 1.21703 * 120.00016 * 359.07453 * 12 10 8 14 14 C 1.46577 * 120.00344 * 179.08294 * 12 10 8 15 15 C 1.36647 * 125.45782 * 188.19613 * 14 12 10 16 16 C 1.37483 * 113.29518 * 179.97438 * 15 14 12 17 17 C 1.50695 * 122.44803 * 179.97438 * 16 15 14 18 18 C 1.33816 * 115.10314 * 0.02562 * 16 15 14 19 19 C 1.50694 * 124.52451 * 180.02562 * 18 16 15 20 20 O 1.42901 * 109.46978 * 245.12704 * 19 18 16 21 21 Si 1.86301 * 109.47349 * 125.12685 * 19 18 16 22 22 S 1.70625 * 110.95295 * 359.72263 * 18 16 15 23 23 C 1.53780 * 87.08601 * 334.57052 * 8 7 5 24 24 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47158 * 299.99455 * 1 2 3 26 26 H 1.08997 * 109.47559 * 59.99453 * 1 2 3 27 27 H 1.09003 * 113.60763 * 25.43646 * 7 5 3 28 28 H 1.08994 * 113.69264 * 254.54551 * 7 5 3 29 29 H 1.09002 * 109.47454 * 96.39158 * 11 10 8 30 30 H 1.09005 * 109.47242 * 216.39158 * 11 10 8 31 31 H 1.08998 * 109.47074 * 336.38945 * 11 10 8 32 32 H 1.07990 * 123.35346 * 359.97032 * 15 14 12 33 33 H 1.08995 * 109.47477 * 85.25329 * 17 16 15 34 34 H 1.09005 * 109.46920 * 205.25924 * 17 16 15 35 35 H 1.09004 * 109.47220 * 325.25474 * 17 16 15 36 36 H 1.09002 * 109.47179 * 5.12684 * 19 18 16 37 37 H 0.96695 * 114.00129 * 299.99705 * 20 19 18 38 38 H 1.48507 * 109.99874 * 58.68147 * 21 19 18 39 39 H 1.48495 * 110.00103 * 179.97438 * 21 19 18 40 40 H 1.08998 * 113.61599 * 139.97611 * 23 8 7 41 41 H 1.09003 * 113.61273 * 270.88589 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0243 0.6362 -0.7558 7 6 4.1077 2.7143 -0.0011 8 6 5.1813 2.2271 0.9862 9 1 6.0811 1.8483 0.5010 10 7 5.4723 3.1843 2.0563 11 6 4.4015 3.6303 2.9511 12 6 6.7249 3.6547 2.2176 13 8 7.6179 3.2714 1.4850 14 6 7.0119 4.6277 3.2756 15 6 8.1934 5.2943 3.4404 16 6 8.1892 6.1504 4.5161 17 6 9.3857 6.9878 4.8876 18 6 7.0454 6.1848 5.2099 19 6 6.8083 7.0460 6.4235 20 8 6.6155 6.2128 7.5684 21 14 5.2910 8.0933 6.1551 22 16 5.8885 5.1297 4.5318 23 6 4.1917 1.1238 1.3962 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.4173 3.4405 0.4279 28 1 4.5105 3.0303 -0.9633 29 1 4.4187 3.0345 3.8637 30 1 4.5502 4.6810 3.2003 31 1 3.4387 3.5074 2.4551 32 1 9.0455 5.1617 2.7904 33 1 9.3760 7.9119 4.3097 34 1 9.3478 7.2239 5.9511 35 1 10.2988 6.4333 4.6709 36 1 7.6715 7.6916 6.5852 37 1 5.8626 5.6106 7.4943 38 1 4.1130 7.2252 5.9019 39 1 5.0460 8.9467 7.3453 40 1 4.6621 0.1545 1.5614 41 1 3.5243 1.4153 2.2072 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12109654_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:46:00 Heat of formation + Delta-G solvation = -79.040316 kcal Electronic energy + Delta-G solvation = -25548.085764 eV Core-core repulsion = 21716.027610 eV Total energy + Delta-G solvation = -3832.058154 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.13894 -41.05746 -39.94802 -39.07070 -37.66739 -37.37621 -35.79392 -32.44928 -29.86981 -29.66851 -28.49936 -27.63461 -26.97207 -26.09529 -24.34494 -22.53727 -21.10185 -20.51828 -20.04949 -19.34334 -18.77982 -18.15677 -17.83210 -17.48265 -17.23899 -16.88907 -16.73623 -16.23716 -15.95785 -15.83622 -15.16549 -14.89818 -14.64306 -14.46743 -14.35957 -14.33264 -14.03558 -13.83708 -13.75446 -13.55200 -13.44949 -13.14784 -13.11868 -12.89442 -12.60653 -12.42838 -12.30481 -12.16737 -11.88653 -11.83650 -11.50616 -11.39118 -11.06472 -10.94201 -9.99015 -9.57929 -9.38567 -5.10573 -0.61228 0.33561 0.77732 1.05428 1.09068 1.28884 1.43573 1.51452 1.82917 1.85880 2.11409 3.05561 3.18284 3.19615 3.39166 3.49410 3.55525 3.60034 3.75889 3.92036 4.09017 4.11440 4.13589 4.18922 4.22866 4.32496 4.37334 4.38841 4.42827 4.46431 4.48960 4.54827 4.63460 4.69479 4.76946 4.83056 4.97221 4.97851 5.27322 5.31509 5.35990 5.41164 6.11798 6.18922 6.67376 6.98294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.504 6.504 5 C -0.108 4.108 6 H 0.133 0.867 7 C -0.133 4.133 8 C 0.127 3.873 9 H 0.133 0.867 10 N -0.601 5.601 11 C 0.057 3.943 12 C 0.594 3.406 13 O -0.523 6.523 14 C -0.263 4.263 15 C -0.039 4.039 16 C -0.096 4.096 17 C -0.103 4.103 18 C -0.253 4.253 19 C -0.043 4.043 20 O -0.522 6.522 21 Si 0.672 3.328 22 S 0.208 5.792 23 C -0.132 4.132 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.373 0.627 38 H -0.244 1.244 39 H -0.241 1.241 40 H 0.094 0.906 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 0.095 0.007 2.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.391 6.391 5 C -0.128 4.128 6 H 0.151 0.849 7 C -0.171 4.171 8 C 0.023 3.977 9 H 0.151 0.849 10 N -0.333 5.333 11 C -0.088 4.088 12 C 0.383 3.617 13 O -0.400 6.400 14 C -0.383 4.383 15 C -0.073 4.073 16 C -0.108 4.108 17 C -0.161 4.161 18 C -0.371 4.371 19 C -0.154 4.154 20 O -0.328 6.328 21 Si 0.571 3.429 22 S 0.479 5.521 23 C -0.170 4.170 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.173 0.827 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.221 0.779 38 H -0.168 1.168 39 H -0.165 1.165 40 H 0.112 0.888 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.037 0.353 0.523 4.086 hybrid contribution 0.946 -0.632 0.158 1.149 sum -3.091 -0.279 0.681 3.178 Atomic orbital electron populations 1.23329 0.75882 1.04058 1.02715 1.86523 1.23755 1.33234 1.83742 1.23462 0.91530 0.81454 0.72105 1.90686 1.66953 1.36431 1.45052 1.22310 0.87741 1.01226 1.01500 0.84909 1.23502 0.97543 0.94741 1.01349 1.22601 0.98401 0.88853 0.87828 0.84907 1.47543 1.08267 1.44768 1.32720 1.22081 0.92224 1.00092 0.94373 1.17002 0.82139 0.79998 0.82555 1.90853 1.44702 1.58827 1.45658 1.24373 1.00355 1.09282 1.04294 1.20671 0.97012 0.93087 0.96524 1.18632 0.96059 1.00105 0.95998 1.20635 0.94444 0.98913 1.02123 1.25055 1.00541 1.07503 1.04028 1.24577 1.11973 0.96094 0.82773 1.86676 1.53196 1.54416 1.38561 0.94719 0.75659 0.84613 0.87934 1.83517 1.12195 1.36381 1.20050 1.23428 0.97795 1.00804 0.95017 0.87812 0.91777 0.91686 0.87923 0.89254 0.91030 0.90263 0.88605 0.82666 0.90507 0.91101 0.90988 0.85438 0.77927 1.16782 1.16515 0.88785 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.25 10.57 -39.25 -0.41 -0.67 16 3 C 0.47 0.46 7.48 36.01 0.27 0.73 16 4 O -0.50 -1.84 15.65 -18.75 -0.29 -2.13 16 5 C -0.11 0.18 4.26 -90.96 -0.39 -0.21 16 6 H 0.13 -0.44 8.14 -51.93 -0.42 -0.87 16 7 C -0.13 0.15 6.91 -25.92 -0.18 -0.03 16 8 C 0.13 -0.10 4.21 -67.12 -0.28 -0.39 16 9 H 0.13 -0.01 7.21 -51.92 -0.37 -0.38 16 10 N -0.60 -0.12 3.09 -174.58 -0.54 -0.65 16 11 C 0.06 -0.12 7.67 59.85 0.46 0.34 16 12 C 0.59 1.67 7.64 -12.90 -0.10 1.57 16 13 O -0.52 -3.11 16.32 5.19 0.08 -3.03 16 14 C -0.26 -0.42 6.25 -36.80 -0.23 -0.65 16 15 C -0.04 -0.06 9.81 -40.43 -0.40 -0.45 16 16 C -0.10 -0.04 5.78 -106.45 -0.62 -0.66 16 17 C -0.10 0.13 9.75 36.00 0.35 0.48 16 18 C -0.25 0.01 4.80 -35.86 -0.17 -0.16 16 19 C -0.04 0.03 2.78 36.00 0.10 0.13 16 20 O -0.52 -0.42 12.88 -35.23 -0.45 -0.87 16 21 Si 0.67 -0.99 32.18 -169.99 -5.47 -6.46 16 22 S 0.21 -0.15 16.63 -107.50 -1.79 -1.94 16 23 C -0.13 0.30 7.04 -25.92 -0.18 0.12 16 24 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 25 H 0.06 -0.08 8.13 -51.93 -0.42 -0.50 16 26 H 0.06 -0.06 8.13 -51.93 -0.42 -0.49 16 27 H 0.10 -0.03 6.20 -51.93 -0.32 -0.35 16 28 H 0.09 -0.12 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 -0.22 7.83 -51.93 -0.41 -0.63 16 30 H 0.08 -0.17 4.48 -22.29 -0.10 -0.27 16 31 H 0.10 -0.28 6.09 -51.93 -0.32 -0.59 16 32 H 0.16 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 34 H 0.07 -0.10 6.45 -51.93 -0.33 -0.44 16 35 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 36 H 0.13 -0.18 5.99 -51.93 -0.31 -0.49 16 37 H 0.37 -0.76 8.70 45.56 0.40 -0.37 16 38 H -0.24 0.09 7.11 56.52 0.40 0.49 16 39 H -0.24 -0.32 7.11 56.52 0.40 0.08 16 40 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.09 -0.23 6.62 -51.93 -0.34 -0.57 16 LS Contribution 349.22 15.07 5.26 5.26 Total: 0.00 -8.40 349.22 -9.02 -17.42 By element: Atomic # 1 Polarization: -3.67 SS G_CDS: -5.11 Total: -8.78 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.30 Total: 1.85 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -0.54 Total: -0.65 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -1.08 Total: -6.70 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.47 Total: -6.46 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.79 Total: -1.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -8.40 -9.02 -17.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.616 kcal (2) G-P(sol) polarization free energy of solvation -8.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds