Wall clock time and date at job start Tue Mar 9 2021 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 117.00203 * 2 1 4 4 O 1.20818 * 119.99739 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99944 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85388 * 311.19829 * 5 3 2 7 7 C 1.53779 * 113.61557 * 82.50511 * 5 3 2 8 8 C 1.53781 * 87.08306 * 139.97749 * 7 5 3 9 9 H 1.08999 * 113.61244 * 89.11849 * 8 7 5 10 10 N 1.46497 * 113.61517 * 220.01992 * 8 7 5 11 11 C 1.46507 * 120.00099 * 43.62404 * 10 8 7 12 12 C 1.34776 * 120.00345 * 223.62449 * 10 8 7 13 13 O 1.21285 * 119.99942 * 0.02562 * 12 10 8 14 14 C 1.50699 * 120.00337 * 180.02562 * 12 10 8 15 15 N 1.46501 * 109.46858 * 179.97438 * 14 12 10 16 16 C 1.36832 * 125.06227 * 264.69176 * 15 14 12 17 17 C 1.34237 * 109.93783 * 179.81817 * 16 15 14 18 18 C 1.50700 * 126.49973 * 180.13811 * 17 16 15 19 19 O 1.42894 * 109.47267 * 105.35953 * 18 17 16 20 20 Si 1.86294 * 109.47205 * 345.35361 * 18 17 16 21 21 C 1.46490 * 107.00055 * 0.43482 * 17 16 15 22 22 C 1.39591 * 134.03765 * 179.70555 * 21 17 16 23 23 C 1.36661 * 119.76544 * 180.02562 * 22 21 17 24 24 C 1.38793 * 120.52710 * 0.04255 * 23 22 21 25 25 C 1.37789 * 120.66687 * 359.96050 * 24 23 22 26 26 C 1.37696 * 125.06202 * 85.00383 * 15 14 12 27 27 C 1.53777 * 87.07903 * 334.56874 * 8 7 5 28 28 H 1.09002 * 109.47113 * 299.99386 * 1 2 3 29 29 H 1.08997 * 109.47290 * 59.99914 * 1 2 3 30 30 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09000 * 113.61250 * 25.43203 * 7 5 3 32 32 H 1.08997 * 113.61639 * 254.53072 * 7 5 3 33 33 H 1.09003 * 109.46991 * 94.17156 * 11 10 8 34 34 H 1.08996 * 109.46889 * 214.17279 * 11 10 8 35 35 H 1.09001 * 109.46602 * 334.17094 * 11 10 8 36 36 H 1.09000 * 109.47204 * 299.99568 * 14 12 10 37 37 H 1.08997 * 109.47370 * 59.99974 * 14 12 10 38 38 H 1.07993 * 125.03303 * 359.97438 * 16 15 14 39 39 H 1.09003 * 109.46741 * 225.35617 * 18 17 16 40 40 H 0.96702 * 113.99886 * 299.99774 * 19 18 17 41 41 H 1.48503 * 109.99976 * 58.68466 * 20 18 17 42 42 H 1.48501 * 110.00296 * 180.02562 * 20 18 17 43 43 H 1.07996 * 120.11758 * 0.02562 * 22 21 17 44 44 H 1.07998 * 119.73531 * 180.02562 * 23 22 21 45 45 H 1.07996 * 119.66381 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.11274 * 179.97438 * 25 24 23 47 47 H 1.09003 * 113.61126 * 139.97817 * 27 8 7 48 48 H 1.09003 * 113.61295 * 270.79641 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0233 0.6364 0.7566 7 6 4.1917 1.1232 -1.3961 8 6 5.1814 2.2266 -0.9865 9 1 6.0810 1.8480 -0.5013 10 7 5.4709 3.1826 -2.0582 11 6 4.3823 3.7036 -2.8889 12 6 6.7386 3.5830 -2.2799 13 8 7.6398 3.1514 -1.5926 14 6 7.0362 4.5669 -3.3819 15 7 8.4753 4.8392 -3.4178 16 6 9.0912 5.8941 -2.8014 17 6 10.4135 5.8486 -3.0286 18 6 11.4440 6.8250 -2.5230 19 8 12.1853 6.2264 -1.4580 20 14 10.5921 8.3603 -1.9004 21 6 10.6637 4.6738 -3.8671 22 6 11.8101 4.1090 -4.4288 23 6 11.7071 2.9755 -5.1853 24 6 10.4713 2.3815 -5.4006 25 6 9.3271 2.9223 -4.8558 26 6 9.4086 4.0750 -4.0819 27 6 4.1077 2.7141 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5243 1.4145 -2.2072 32 1 4.6620 0.1539 -1.5610 33 1 4.0314 4.6496 -2.4766 34 1 4.7444 3.8619 -3.9047 35 1 3.5614 2.9867 -2.9034 36 1 6.7215 4.1481 -4.3378 37 1 6.4957 5.4950 -3.1962 38 1 8.5885 6.6500 -2.2164 39 1 12.1225 7.0895 -3.3340 40 1 11.6441 5.9650 -0.7005 41 1 9.6406 8.0088 -0.8157 42 1 11.5976 9.3315 -1.3995 43 1 12.7749 4.5660 -4.2661 44 1 12.5943 2.5387 -5.6193 45 1 10.4060 1.4862 -6.0011 46 1 8.3701 2.4529 -5.0294 47 1 4.5105 3.0291 0.9632 48 1 3.4183 3.4414 -0.4284 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109654_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:46:13 Heat of formation + Delta-G solvation = -36.604951 kcal Electronic energy + Delta-G solvation = -32094.073941 eV Core-core repulsion = 27697.287865 eV Total energy + Delta-G solvation = -4396.786076 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.58582 -42.07786 -40.96853 -39.29860 -38.14819 -37.70246 -37.47546 -35.73918 -34.03100 -31.48637 -30.24035 -29.73622 -28.91341 -28.13886 -26.97992 -26.73677 -25.61813 -23.80452 -23.03801 -22.30946 -20.99236 -20.58197 -20.18476 -19.06647 -18.59483 -18.38752 -17.97747 -17.70075 -17.51975 -17.26621 -16.63886 -16.60746 -16.36544 -16.25119 -16.03100 -15.49304 -15.25430 -14.88454 -14.73803 -14.55567 -14.51406 -14.27764 -14.21252 -14.09797 -13.75956 -13.59887 -13.41934 -13.19337 -13.09462 -12.93780 -12.73430 -12.57364 -12.52249 -12.38660 -12.24722 -11.99815 -11.87344 -11.80128 -11.73850 -11.45525 -11.11669 -10.54279 -10.45642 -9.78461 -9.15403 -8.63086 -4.89644 0.14823 0.64560 1.01759 1.32634 1.36535 1.38587 1.61021 1.63943 1.71972 1.99334 2.07611 2.94714 3.13992 3.26986 3.39161 3.51532 3.57622 3.65497 3.69577 3.70001 3.83972 3.96435 4.03309 4.06136 4.17929 4.22547 4.24465 4.27180 4.29965 4.43798 4.49102 4.50258 4.52753 4.59802 4.61576 4.67481 4.72416 4.74512 4.79289 4.84525 4.89877 4.93682 5.08191 5.14555 5.29742 5.41013 5.51872 5.67430 5.74498 5.75961 6.11808 6.22128 6.31193 6.54107 6.61457 6.95710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.534 6.534 5 C -0.106 4.106 6 H 0.146 0.854 7 C -0.122 4.122 8 C 0.121 3.879 9 H 0.111 0.889 10 N -0.597 5.597 11 C 0.057 3.943 12 C 0.492 3.508 13 O -0.570 6.570 14 C 0.089 3.911 15 N -0.466 5.466 16 C 0.073 3.927 17 C -0.214 4.214 18 C -0.055 4.055 19 O -0.555 6.555 20 Si 0.785 3.215 21 C -0.115 4.115 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.106 4.106 25 C -0.134 4.134 26 C 0.092 3.908 27 C -0.126 4.126 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.195 0.805 39 H 0.111 0.889 40 H 0.381 0.619 41 H -0.275 1.275 42 H -0.304 1.304 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.146 0.854 46 H 0.132 0.868 47 H 0.083 0.917 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 -0.189 -4.424 9.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.126 4.126 6 H 0.163 0.837 7 C -0.160 4.160 8 C 0.017 3.983 9 H 0.129 0.871 10 N -0.329 5.329 11 C -0.084 4.084 12 C 0.280 3.720 13 O -0.449 6.449 14 C -0.035 4.035 15 N -0.149 5.149 16 C -0.052 4.052 17 C -0.222 4.222 18 C -0.163 4.163 19 O -0.363 6.363 20 Si 0.688 3.312 21 C -0.119 4.119 22 C -0.106 4.106 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.154 4.154 26 C -0.013 4.013 27 C -0.165 4.165 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.163 0.837 37 H 0.178 0.822 38 H 0.212 0.788 39 H 0.129 0.871 40 H 0.230 0.770 41 H -0.201 1.201 42 H -0.232 1.232 43 H 0.137 0.863 44 H 0.154 0.846 45 H 0.163 0.837 46 H 0.150 0.850 47 H 0.101 0.899 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.059 0.446 -3.795 8.919 hybrid contribution 0.081 -1.067 1.244 1.641 sum -7.978 -0.621 -2.552 8.399 Atomic orbital electron populations 1.23532 0.74946 1.05599 1.02528 1.86526 1.24822 1.33140 1.83451 1.23877 0.92283 0.81054 0.71058 1.90666 1.67776 1.37315 1.46627 1.22394 0.86246 1.01354 1.02589 0.83672 1.23388 0.97307 1.00664 0.94621 1.22457 0.97556 0.89764 0.88522 0.87142 1.47845 1.07006 1.44088 1.33958 1.22244 0.89969 1.00661 0.95563 1.21499 0.82403 0.82566 0.85557 1.90785 1.46144 1.57759 1.50198 1.22040 0.79386 1.02098 0.99955 1.43449 1.06009 1.22063 1.43366 1.21992 0.92354 0.92377 0.98504 1.20700 0.94116 1.00048 1.07294 1.24699 0.96987 1.02360 0.92278 1.86552 1.38581 1.81349 1.29807 0.94193 0.78693 0.74141 0.84126 1.19330 0.93033 0.97546 1.02021 1.20451 0.97081 0.96154 0.96915 1.20922 0.98665 0.96707 1.00961 1.21131 0.91579 1.00233 0.99596 1.20238 1.00037 0.94764 1.00365 1.18403 0.88623 0.95486 0.98828 1.23403 0.97229 0.94876 1.00990 0.92155 0.91713 0.85489 0.87904 0.88294 0.90505 0.88068 0.89860 0.83712 0.82187 0.78816 0.87149 0.77036 1.20089 1.23157 0.86312 0.84580 0.83662 0.84969 0.89857 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.12 16 2 O -0.36 -0.29 10.57 -51.46 -0.54 -0.84 16 3 C 0.47 0.67 7.48 71.23 0.53 1.20 16 4 O -0.53 -3.74 15.65 21.99 0.34 -3.39 16 5 C -0.11 0.42 4.26 -11.02 -0.05 0.37 16 6 H 0.15 -0.99 8.14 -2.39 -0.02 -1.01 16 7 C -0.12 0.74 7.12 31.12 0.22 0.96 16 8 C 0.12 -0.38 4.24 45.52 0.19 -0.19 16 9 H 0.11 0.12 7.18 -2.39 -0.02 0.11 16 10 N -0.60 2.87 3.09 -819.63 -2.53 0.34 16 11 C 0.06 -0.67 9.17 127.77 1.17 0.50 16 12 C 0.49 0.05 7.74 87.66 0.68 0.73 16 13 O -0.57 -6.35 15.88 -3.05 -0.05 -6.40 16 14 C 0.09 -0.56 5.09 85.63 0.44 -0.13 16 15 N -0.47 -0.90 2.27 -520.00 -1.18 -2.08 16 16 C 0.07 0.12 9.89 83.00 0.82 0.94 16 17 C -0.21 -1.24 5.58 -18.63 -0.10 -1.34 16 18 C -0.06 -0.23 3.06 71.24 0.22 -0.01 16 19 O -0.56 -4.80 12.88 -148.98 -1.92 -6.71 16 20 Si 0.78 -0.62 30.81 68.60 2.11 1.49 16 21 C -0.12 -1.12 6.35 -20.20 -0.13 -1.24 16 22 C -0.09 -0.81 10.05 22.23 0.22 -0.59 16 23 C -0.15 -0.97 9.97 22.03 0.22 -0.75 16 24 C -0.11 -0.48 10.01 22.30 0.22 -0.25 16 25 C -0.13 -0.65 10.00 22.37 0.22 -0.43 16 26 C 0.09 0.65 6.80 39.03 0.27 0.91 16 27 C -0.13 0.41 6.99 31.12 0.22 0.63 16 28 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 29 H 0.06 -0.20 8.13 -2.39 -0.02 -0.22 16 30 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 31 H 0.10 -0.77 5.93 -2.39 -0.01 -0.78 16 32 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.08 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H 0.10 -1.69 6.61 -2.39 -0.02 -1.71 16 35 H 0.08 -0.96 5.78 -2.39 -0.01 -0.98 16 36 H 0.15 -1.69 7.41 -2.39 -0.02 -1.71 16 37 H 0.16 -2.23 8.08 -2.39 -0.02 -2.25 16 38 H 0.20 -0.94 6.27 -2.91 -0.02 -0.96 16 39 H 0.11 0.41 7.96 -2.39 -0.02 0.39 16 40 H 0.38 1.43 8.70 -74.06 -0.64 0.79 16 41 H -0.27 -0.40 7.00 99.48 0.70 0.30 16 42 H -0.30 -2.13 7.11 99.48 0.71 -1.42 16 43 H 0.12 0.99 8.06 -2.91 -0.02 0.96 16 44 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 45 H 0.15 -0.10 8.06 -2.91 -0.02 -0.13 16 46 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 47 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.10 -0.21 6.76 -2.39 -0.02 -0.23 16 Total: 0.00 -30.09 399.50 3.18 -26.91 By element: Atomic # 1 Polarization: -12.13 SS G_CDS: 0.38 Total: -11.75 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 6.56 Total: 2.43 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -3.71 Total: -1.74 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -2.17 Total: -17.34 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: 2.11 Total: 1.49 kcal Total: -30.09 3.18 -26.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.697 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds