Wall clock time and date at job start Tue Mar 9 2021 14:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 C 1.53003 * 109.46636 * 239.99889 * 2 1 3 5 5 O 1.42898 * 109.47080 * 120.00322 * 2 1 3 6 6 C 1.42902 * 113.99995 * 59.99295 * 5 2 1 7 7 H 1.09000 * 112.85100 * 18.80773 * 6 5 2 8 8 C 1.53787 * 113.60963 * 150.00209 * 6 5 2 9 9 C 1.53784 * 87.07923 * 140.06730 * 8 6 5 10 10 H 1.09004 * 113.61162 * 220.01809 * 9 8 6 11 11 N 1.46499 * 113.61434 * 89.11404 * 9 8 6 12 12 C 1.34778 * 119.99940 * 155.00095 * 11 9 8 13 13 O 1.21280 * 119.99860 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99817 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.46868 * 179.97438 * 14 12 11 16 16 O 1.42894 * 109.47405 * 179.97438 * 15 14 12 17 17 C 1.35901 * 117.00595 * 179.97438 * 16 15 14 18 18 C 1.38711 * 120.05817 * 179.97438 * 17 16 15 19 19 C 1.38166 * 119.94079 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.96692 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.47488 * 299.99869 * 20 19 18 22 22 Si 1.86300 * 109.47001 * 180.02562 * 20 19 18 23 23 C 1.38240 * 120.05883 * 0.02562 * 19 18 17 24 24 C 1.38294 * 120.10952 * 0.02562 * 23 19 18 25 25 C 1.38122 * 120.05349 * 359.67393 * 24 23 19 26 26 C 1.53779 * 87.08045 * 334.56667 * 9 8 6 27 27 H 1.09002 * 109.47170 * 300.00218 * 1 2 3 28 28 H 1.09002 * 109.47055 * 59.99934 * 1 2 3 29 29 H 1.08998 * 109.47733 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46579 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47156 * 300.00004 * 3 2 1 32 32 H 1.09001 * 109.47047 * 60.00337 * 3 2 1 33 33 H 1.09002 * 109.47341 * 300.00068 * 4 2 1 34 34 H 1.09002 * 109.47254 * 60.00298 * 4 2 1 35 35 H 1.09005 * 109.46690 * 180.02562 * 4 2 1 36 36 H 1.09004 * 113.61202 * 254.61483 * 8 6 5 37 37 H 1.08994 * 113.61447 * 25.51914 * 8 6 5 38 38 H 0.97000 * 120.00274 * 334.99936 * 11 9 8 39 39 H 1.08994 * 109.47235 * 299.99749 * 14 12 11 40 40 H 1.08990 * 109.47141 * 60.00062 * 14 12 11 41 41 H 1.09004 * 109.47076 * 299.99756 * 15 14 12 42 42 H 1.09001 * 109.47443 * 59.99842 * 15 14 12 43 43 H 1.07994 * 120.02822 * 359.97438 * 18 17 16 44 44 H 1.09002 * 109.47698 * 60.00353 * 20 19 18 45 45 H 0.96697 * 114.00187 * 180.02562 * 21 20 19 46 46 H 1.48503 * 109.99833 * 298.68043 * 22 20 19 47 47 H 1.48498 * 110.00412 * 59.99980 * 22 20 19 48 48 H 1.08000 * 119.94501 * 179.97438 * 23 19 18 49 49 H 1.07999 * 119.96757 * 179.97438 * 24 23 19 50 50 H 1.08002 * 120.02131 * 180.32730 * 25 24 23 51 51 H 1.09006 * 113.61307 * 270.88660 * 26 9 8 52 52 H 1.08999 * 113.69146 * 139.99146 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5845 -2.0355 1.2644 7 1 1.2521 -2.4452 0.3106 8 6 2.5836 -2.9379 2.0078 9 6 1.3665 -3.6135 2.6614 10 1 1.5114 -3.8482 3.7160 11 7 0.8395 -4.7438 1.8927 12 6 0.1504 -5.7199 2.5162 13 8 -0.0331 -5.6627 3.7137 14 6 -0.3912 -6.8830 1.7255 15 6 -1.1263 -7.8405 2.6656 16 8 -1.6404 -8.9430 1.9159 17 6 -2.3250 -9.8928 2.6059 18 6 -2.8520 -10.9902 1.9409 19 6 -3.5480 -11.9541 2.6447 20 6 -4.1203 -13.1468 1.9230 21 8 -5.0500 -12.7033 0.9325 22 14 -4.9936 -14.2508 3.1433 23 6 -3.7199 -11.8253 4.0103 24 6 -3.1964 -10.7317 4.6754 25 6 -2.4945 -9.7685 3.9773 26 6 0.6068 -2.2981 2.4219 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6765 -1.7490 -1.2493 34 1 1.6766 -0.2075 -2.1393 35 1 3.1300 -0.7217 -1.2491 36 1 3.1486 -3.5984 1.3500 37 1 3.2160 -2.4001 2.7140 38 1 0.9866 -4.7897 0.9351 39 1 -1.0823 -6.5161 0.9668 40 1 0.4323 -7.4091 1.2429 41 1 -0.4348 -8.2074 3.4241 42 1 -1.9499 -7.3146 3.1486 43 1 -2.7190 -11.0906 0.8739 44 1 -3.3146 -13.7018 1.4424 45 1 -5.4588 -13.4198 0.4279 46 1 -4.0311 -14.7444 4.1609 47 1 -6.0946 -13.5057 3.8050 48 1 -4.2647 -12.5797 4.5586 49 1 -3.3324 -10.6332 5.7423 50 1 -2.0813 -8.9173 4.4981 51 1 0.6988 -1.5852 3.2415 52 1 -0.4244 -2.4405 2.0986 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:21 Heat of formation + Delta-G solvation = -99.710809 kcal Electronic energy + Delta-G solvation = -30145.082273 eV Core-core repulsion = 25884.588817 eV Total energy + Delta-G solvation = -4260.493457 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.197 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.66392 -41.31787 -40.29781 -39.15404 -38.31519 -37.33680 -34.71465 -33.69155 -32.92790 -32.69887 -30.94660 -28.48137 -28.36479 -27.16413 -26.70647 -26.11912 -24.66711 -23.83587 -22.23870 -21.59076 -21.19544 -20.41968 -19.27416 -18.40610 -18.19746 -17.71322 -17.55482 -17.40991 -17.26488 -16.81447 -16.66931 -16.13810 -15.89405 -15.87414 -15.44006 -15.05891 -14.71543 -14.66080 -14.54806 -14.47822 -14.32665 -14.15134 -14.02284 -13.57726 -13.47461 -13.38072 -13.12666 -13.04490 -12.93459 -12.83250 -12.82716 -12.67209 -12.56561 -12.42159 -12.17512 -11.91409 -11.82296 -11.77021 -11.64949 -11.28455 -11.14220 -10.43675 -10.42631 -10.18850 -9.98385 -9.42882 -4.94306 0.04711 0.20893 1.27497 1.43023 1.59469 1.64818 1.97943 2.36218 2.48944 2.71170 3.35854 3.42182 3.47387 3.50680 3.67496 3.75515 3.78089 3.80474 3.84423 3.87691 3.90223 3.94006 3.97340 4.09447 4.12831 4.14792 4.28719 4.31891 4.38413 4.53298 4.61006 4.62004 4.64194 4.68228 4.71994 4.74737 4.77330 4.80247 4.83425 4.86683 4.89158 4.94505 4.95470 5.03800 5.08122 5.16146 5.19219 5.27078 5.32083 5.33304 5.45232 5.52217 6.20150 6.36913 6.39556 6.90267 7.07881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.141 4.141 4 C -0.176 4.176 5 O -0.380 6.380 6 C 0.064 3.936 7 H 0.106 0.894 8 C -0.134 4.134 9 C 0.119 3.881 10 H 0.090 0.910 11 N -0.697 5.697 12 C 0.523 3.477 13 O -0.582 6.582 14 C -0.131 4.131 15 C 0.071 3.929 16 O -0.318 6.318 17 C 0.124 3.876 18 C -0.135 4.135 19 C -0.052 4.052 20 C -0.082 4.082 21 O -0.563 6.563 22 Si 0.783 3.217 23 C -0.181 4.181 24 C -0.077 4.077 25 C -0.211 4.211 26 C -0.165 4.165 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.419 0.581 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.405 0.595 46 H -0.287 1.287 47 H -0.299 1.299 48 H 0.121 0.879 49 H 0.148 0.852 50 H 0.142 0.858 51 H 0.088 0.912 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -1.998 -6.902 7.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.198 4.198 4 C -0.233 4.233 5 O -0.300 6.300 6 C 0.007 3.993 7 H 0.124 0.876 8 C -0.172 4.172 9 C 0.013 3.987 10 H 0.108 0.892 11 N -0.350 5.350 12 C 0.311 3.689 13 O -0.461 6.461 14 C -0.170 4.170 15 C -0.004 4.004 16 O -0.232 6.232 17 C 0.079 3.921 18 C -0.153 4.153 19 C -0.052 4.052 20 C -0.191 4.191 21 O -0.373 6.373 22 Si 0.689 3.311 23 C -0.199 4.199 24 C -0.094 4.094 25 C -0.230 4.230 26 C -0.204 4.204 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.257 0.743 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.158 0.842 44 H 0.116 0.884 45 H 0.256 0.744 46 H -0.215 1.215 47 H -0.227 1.227 48 H 0.138 0.862 49 H 0.166 0.834 50 H 0.160 0.840 51 H 0.106 0.894 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.883 -1.389 -5.097 5.356 hybrid contribution 0.246 0.691 0.028 0.734 sum 1.129 -0.698 -5.069 5.240 Atomic orbital electron populations 1.22445 0.95129 1.02655 1.02880 1.21681 0.93526 0.93404 0.85457 1.21801 1.01739 0.93367 1.02868 1.22446 1.02018 1.01226 0.97646 1.88028 1.74060 1.24101 1.43795 1.23796 0.95193 0.82561 0.97776 0.87633 1.23552 0.96304 0.97176 1.00178 1.21559 0.95152 0.85175 0.96785 0.89155 1.45510 1.55185 1.21774 1.12487 1.20650 0.77219 0.83514 0.87509 1.90747 1.59330 1.79037 1.17033 1.21430 1.03315 0.93354 0.98945 1.22485 0.98118 0.85628 0.94185 1.85953 1.67629 1.32199 1.37375 1.19126 0.92746 0.89463 0.90808 1.20366 1.00979 0.92975 1.01013 1.19536 0.96497 0.96028 0.93138 1.24899 0.97166 0.98053 0.99007 1.86444 1.59667 1.38955 1.52279 0.94426 0.77608 0.81802 0.77270 1.20980 1.04416 1.00039 0.94448 1.21156 0.94822 0.92385 1.01078 1.21528 1.05355 1.02694 0.93396 1.23961 0.99367 0.96956 1.00148 0.92745 0.90593 0.92016 0.92192 0.89788 0.92593 0.91432 0.90502 0.92060 0.88748 0.88278 0.74327 0.85332 0.85110 0.91499 0.91794 0.84158 0.88386 0.74374 1.21483 1.22670 0.86168 0.83387 0.84000 0.89361 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.38 8.38 71.98 0.60 0.99 16 2 C 0.10 -0.10 1.11 -10.79 -0.01 -0.12 16 3 C -0.14 0.16 8.84 71.98 0.64 0.79 16 4 C -0.18 0.70 8.38 71.98 0.60 1.31 16 5 O -0.38 -0.83 10.00 -148.98 -1.49 -2.32 16 6 C 0.06 -0.15 2.69 31.12 0.08 -0.07 16 7 H 0.11 -0.64 5.54 -2.39 -0.01 -0.65 16 8 C -0.13 0.43 7.66 31.12 0.24 0.67 16 9 C 0.12 -0.10 4.32 45.52 0.20 0.10 16 10 H 0.09 0.36 7.47 -2.39 -0.02 0.34 16 11 N -0.70 2.75 5.26 -440.03 -2.32 0.44 16 12 C 0.52 0.53 7.83 87.66 0.69 1.22 16 13 O -0.58 -6.14 15.58 -3.03 -0.05 -6.19 16 14 C -0.13 0.51 6.07 29.85 0.18 0.69 16 15 C 0.07 0.16 4.03 71.98 0.29 0.45 16 16 O -0.32 -1.77 10.14 -92.43 -0.94 -2.71 16 17 C 0.12 0.98 6.69 22.50 0.15 1.13 16 18 C -0.13 -1.05 9.55 22.37 0.21 -0.84 16 19 C -0.05 -0.37 5.42 -19.88 -0.11 -0.48 16 20 C -0.08 -0.06 2.81 71.23 0.20 0.14 16 21 O -0.56 -0.45 12.74 -148.98 -1.90 -2.35 16 22 Si 0.78 -0.89 29.78 68.60 2.04 1.15 16 23 C -0.18 -1.38 8.67 22.28 0.19 -1.19 16 24 C -0.08 -0.48 10.04 22.26 0.22 -0.26 16 25 C -0.21 -1.43 9.04 22.36 0.20 -1.23 16 26 C -0.17 0.04 7.71 31.12 0.24 0.28 16 27 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.06 -0.19 7.02 -2.39 -0.02 -0.21 16 30 H 0.06 -0.02 8.14 -2.38 -0.02 -0.03 16 31 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 -0.40 6.24 -2.39 -0.01 -0.42 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 36 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.42 -4.40 8.70 -92.71 -0.81 -5.21 16 39 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.13 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.07 0.23 7.61 -2.39 -0.02 0.21 16 42 H 0.06 0.25 7.63 -2.39 -0.02 0.24 16 43 H 0.14 0.84 8.06 -2.91 -0.02 0.81 16 44 H 0.10 -0.35 7.96 -2.39 -0.02 -0.37 16 45 H 0.40 -4.16 8.74 -74.06 -0.65 -4.80 16 46 H -0.29 -1.17 7.11 99.48 0.71 -0.47 16 47 H -0.30 -2.01 7.11 99.48 0.71 -1.31 16 48 H 0.12 0.76 4.87 -2.91 -0.01 0.75 16 49 H 0.15 0.23 8.06 -2.91 -0.02 0.21 16 50 H 0.14 0.62 6.30 -2.91 -0.02 0.60 16 51 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 52 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -22.39 417.03 -0.31 -22.70 By element: Atomic # 1 Polarization: -13.82 SS G_CDS: -0.49 Total: -14.31 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.82 Total: 3.58 kcal Atomic # 7 Polarization: 2.75 SS G_CDS: -2.32 Total: 0.44 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -4.37 Total: -13.56 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: 2.04 Total: 1.15 kcal Total: -22.39 -0.31 -22.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.009 kcal (2) G-P(sol) polarization free energy of solvation -22.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds