Wall clock time and date at job start Tue Mar 9 2021 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35993 * 116.99644 * 2 1 4 4 C 1.39154 * 120.07187 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.07374 * 0.02562 * 4 3 2 6 6 C 1.42900 * 116.99898 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47029 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99485 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00142 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00027 * 179.97438 * 9 7 6 11 11 H 1.08992 * 112.85203 * 25.33924 * 10 9 7 12 12 C 1.53791 * 113.61259 * 156.53066 * 10 9 7 13 13 C 1.53786 * 87.07765 * 139.98362 * 12 10 9 14 14 H 1.08999 * 113.60906 * 220.01928 * 13 12 10 15 15 O 1.42899 * 113.61686 * 89.20184 * 13 12 10 16 16 C 1.42893 * 114.00235 * 149.99802 * 15 13 12 17 17 C 1.52999 * 109.47185 * 59.99789 * 16 15 13 18 18 C 1.53000 * 109.47369 * 180.02562 * 16 15 13 19 19 C 1.53002 * 109.47045 * 300.00132 * 16 15 13 20 20 C 1.53783 * 113.61590 * 254.13532 * 10 9 7 21 21 C 1.38565 * 119.85471 * 180.02562 * 4 3 2 22 22 C 1.38243 * 119.99788 * 359.97438 * 21 4 3 23 23 N 1.48009 * 119.92357 * 180.02562 * 22 21 4 24 24 O 1.21800 * 120.00057 * 359.97438 * 23 22 21 25 25 O 1.21797 * 119.99771 * 180.02562 * 23 22 21 26 26 C 1.38249 * 120.14768 * 0.02562 * 22 21 4 27 27 C 1.50700 * 119.92371 * 179.97438 * 26 22 21 28 28 O 1.42897 * 109.47224 * 75.00559 * 27 26 22 29 29 Si 1.86305 * 109.46979 * 195.00204 * 27 26 22 30 30 C 1.38236 * 120.14650 * 0.02562 * 26 22 21 31 31 H 1.08997 * 109.47218 * 60.00351 * 1 2 3 32 32 H 1.08999 * 109.46947 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47330 * 299.99734 * 1 2 3 34 34 H 1.09007 * 109.47188 * 299.99161 * 6 5 4 35 35 H 1.08994 * 109.47700 * 59.99882 * 6 5 4 36 36 H 0.97008 * 120.00260 * 0.02562 * 9 7 6 37 37 H 1.08993 * 113.61363 * 254.53080 * 12 10 9 38 38 H 1.08994 * 113.61441 * 25.35354 * 12 10 9 39 39 H 1.09000 * 109.46765 * 60.00076 * 17 16 15 40 40 H 1.09004 * 109.46785 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.47339 * 300.00098 * 17 16 15 42 42 H 1.09002 * 109.47041 * 59.99522 * 18 16 15 43 43 H 1.08993 * 109.47340 * 179.97438 * 18 16 15 44 44 H 1.09000 * 109.46990 * 300.00174 * 18 16 15 45 45 H 1.08998 * 109.47252 * 60.00041 * 19 16 15 46 46 H 1.09001 * 109.47441 * 180.02562 * 19 16 15 47 47 H 1.09004 * 109.47169 * 299.99752 * 19 16 15 48 48 H 1.08992 * 113.61313 * 334.57425 * 20 10 9 49 49 H 1.09004 * 113.60856 * 105.47340 * 20 10 9 50 50 H 1.08000 * 120.00430 * 179.73061 * 21 4 3 51 51 H 1.09002 * 109.47430 * 315.00140 * 27 26 22 52 52 H 0.96704 * 114.00225 * 59.99547 * 28 27 26 53 53 H 1.48502 * 110.00028 * 58.67934 * 29 27 26 54 54 H 1.48497 * 110.00202 * 180.02562 * 29 27 26 55 55 H 1.08003 * 119.99984 * 179.97438 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4359 1.2864 0.0005 5 8 4.1795 0.1478 0.0005 6 6 5.6003 0.3009 0.0017 7 6 6.2520 -1.0580 0.0021 8 8 5.5670 -2.0589 0.0011 9 7 7.5957 -1.1610 0.0027 10 6 8.2291 -2.4819 0.0037 11 1 7.5938 -3.2563 -0.4259 12 6 9.6612 -2.4788 -0.5570 13 6 10.0188 -3.4669 0.5658 14 1 10.9922 -3.2792 1.0189 15 8 9.8295 -4.8366 0.2049 16 6 10.7190 -5.7397 0.8644 17 6 10.5178 -5.6398 2.3778 18 6 10.4280 -7.1695 0.4040 19 6 12.1642 -5.3769 0.5170 20 6 8.8423 -2.8701 1.3595 21 6 4.0602 2.5234 0.0011 22 6 3.3027 3.6799 0.0005 23 7 3.9713 5.0004 0.0005 24 8 5.1875 5.0672 0.0015 25 8 3.3053 6.0201 0.0005 26 6 1.9222 3.6057 0.0000 27 6 1.1015 4.8696 0.0000 28 8 1.1349 5.4593 -1.3012 29 14 -0.6598 4.4663 0.4539 30 6 1.2931 2.3748 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 5.9072 0.8510 -0.8879 35 1 5.9059 0.8502 0.8921 36 1 8.1435 -0.3604 0.0032 37 1 9.7397 -2.9066 -1.5564 38 1 10.1627 -1.5152 -0.4684 39 1 9.4882 -5.8983 2.6252 40 1 11.1961 -6.3291 2.8808 41 1 10.7255 -4.6212 2.7054 42 1 10.5716 -7.2404 -0.6742 43 1 11.1068 -7.8584 0.9067 44 1 9.3984 -7.4283 0.6511 45 1 12.3719 -4.3583 0.8447 46 1 12.8428 -6.0661 1.0197 47 1 12.3077 -5.4481 -0.5612 48 1 9.1200 -2.0139 1.9742 49 1 8.2607 -3.6133 1.9050 50 1 5.1384 2.5842 0.0059 51 1 1.5128 5.5700 0.7270 52 1 0.7832 4.8907 -1.9999 53 1 -0.7050 3.8233 1.7918 54 1 -1.4798 5.7043 0.4569 55 1 0.2145 2.3196 0.0005 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:43 Heat of formation + Delta-G solvation = -115.630361 kcal Electronic energy + Delta-G solvation = -39910.775132 eV Core-core repulsion = 34499.892724 eV Total energy + Delta-G solvation = -5410.882408 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.191 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.40992 -42.13181 -41.44838 -40.54701 -39.60462 -39.20452 -38.14811 -37.72832 -37.13086 -34.85525 -33.40431 -32.68245 -32.51023 -29.95162 -28.78203 -28.43588 -28.36359 -27.91959 -26.66919 -25.98228 -25.19113 -23.80243 -23.19450 -21.89546 -21.70650 -20.78098 -20.24322 -19.82462 -19.51579 -18.74345 -18.67245 -18.44175 -17.90530 -17.76210 -17.67445 -17.32052 -16.87554 -16.82178 -16.53041 -16.39134 -16.09274 -15.97391 -15.62577 -15.56421 -15.13994 -14.91183 -14.79280 -14.40872 -14.34758 -14.21768 -13.92878 -13.88864 -13.52076 -13.47654 -13.44677 -13.07364 -13.02949 -12.88918 -12.74391 -12.67875 -12.67416 -12.57359 -12.49441 -12.44280 -12.33958 -12.27873 -12.21704 -11.96107 -11.78847 -11.73666 -11.17469 -11.01177 -10.53995 -10.46734 -10.46446 -10.15575 -9.50012 -5.13822 -1.37150 -0.44269 0.15599 0.29636 1.12474 1.24449 1.36240 1.56986 1.88652 1.89388 1.93256 2.35519 2.56377 2.97281 3.16977 3.26257 3.42390 3.45989 3.53112 3.56076 3.56349 3.77174 3.86552 3.89008 3.93064 3.94597 3.96805 4.02406 4.05199 4.10363 4.11001 4.21982 4.26315 4.38301 4.40625 4.54316 4.62909 4.64186 4.67780 4.72419 4.74027 4.77176 4.80934 4.81329 4.89212 4.91082 4.94462 5.02511 5.07707 5.18444 5.24453 5.32088 5.34122 5.41916 5.58574 6.05561 6.37574 6.39404 6.46257 6.71026 7.07700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.171 3.829 4 C 0.100 3.900 5 O -0.291 6.291 6 C 0.028 3.972 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.698 5.698 10 C 0.125 3.875 11 H 0.083 0.917 12 C -0.133 4.133 13 C 0.062 3.938 14 H 0.102 0.898 15 O -0.377 6.377 16 C 0.100 3.900 17 C -0.174 4.174 18 C -0.141 4.141 19 C -0.175 4.175 20 C -0.166 4.166 21 C -0.110 4.110 22 C -0.046 4.046 23 N 0.036 4.964 24 O -0.186 6.186 25 O -0.166 6.166 26 C -0.040 4.040 27 C -0.091 4.091 28 O -0.536 6.536 29 Si 0.786 3.214 30 C -0.163 4.163 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.113 0.887 49 H 0.057 0.943 50 H 0.184 0.816 51 H 0.115 0.885 52 H 0.393 0.607 53 H -0.272 1.272 54 H -0.290 1.290 55 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -3.267 -0.120 3.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.220 6.220 3 C 0.122 3.878 4 C 0.052 3.948 5 O -0.204 6.204 6 C -0.050 4.050 7 C 0.300 3.700 8 O -0.447 6.447 9 N -0.352 5.352 10 C 0.020 3.980 11 H 0.101 0.899 12 C -0.171 4.171 13 C 0.004 3.996 14 H 0.119 0.881 15 O -0.297 6.297 16 C 0.061 3.939 17 C -0.231 4.231 18 C -0.198 4.198 19 C -0.233 4.233 20 C -0.205 4.205 21 C -0.129 4.129 22 C -0.130 4.130 23 N 0.549 4.451 24 O -0.397 6.397 25 O -0.379 6.379 26 C -0.042 4.042 27 C -0.199 4.199 28 O -0.343 6.343 29 Si 0.688 3.312 30 C -0.181 4.181 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.261 0.739 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.131 0.869 49 H 0.076 0.924 50 H 0.201 0.799 51 H 0.132 0.868 52 H 0.242 0.758 53 H -0.198 1.198 54 H -0.217 1.217 55 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.323 -4.468 0.621 4.522 hybrid contribution 1.182 1.154 0.430 1.707 sum 0.859 -3.314 1.051 3.581 Atomic orbital electron populations 1.23813 0.74676 1.07060 1.04212 1.86337 1.24885 1.24544 1.86189 1.18687 0.89161 0.86402 0.93579 1.17984 0.88855 0.85117 1.02811 1.86308 1.18496 1.26878 1.88722 1.22924 0.78791 0.95936 1.07332 1.20421 0.83291 0.90446 0.75805 1.90783 1.64029 1.39992 1.49941 1.45705 1.05103 1.10148 1.74261 1.22433 0.93277 0.84557 0.97706 0.89853 1.23623 0.93554 1.00529 0.99357 1.22909 0.98388 0.81827 0.96493 0.88071 1.87971 1.59003 1.15802 1.66954 1.21702 0.89702 0.90346 0.92118 1.22446 1.02396 1.03086 0.95208 1.21805 1.02402 0.93513 1.02084 1.22436 0.95439 1.02845 1.02537 1.24049 0.97846 1.01579 0.97044 1.20900 1.03015 0.88121 1.00881 1.20557 0.92767 0.81923 1.17796 1.43710 1.00823 1.03422 0.97157 1.94500 0.96507 1.94115 1.54533 1.94576 1.64409 1.25400 1.53558 1.20226 0.91069 0.97665 0.95252 1.25768 1.10606 0.92740 0.90808 1.86668 1.87121 1.44574 1.15937 0.94383 0.71795 0.82176 0.82825 1.21081 1.01770 0.88070 1.07187 0.88788 0.86134 0.90150 0.85262 0.85382 0.73862 0.90445 0.85286 0.92966 0.90486 0.91634 0.92212 0.89565 0.92802 0.91302 0.90447 0.92116 0.86889 0.92438 0.79933 0.86780 0.75798 1.19781 1.21695 0.78942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -0.10 10.28 -79.60 -0.82 -0.92 16 3 C 0.17 -0.10 6.70 22.57 0.15 0.05 16 4 C 0.10 0.11 6.70 22.57 0.15 0.26 16 5 O -0.29 -1.21 9.45 -67.08 -0.63 -1.85 16 6 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 7 C 0.51 1.53 7.91 87.66 0.69 2.23 16 8 O -0.57 -8.56 16.12 16.01 0.26 -8.30 16 9 N -0.70 2.58 5.36 -440.03 -2.36 0.22 16 10 C 0.13 0.02 4.15 45.52 0.19 0.21 16 11 H 0.08 0.69 7.50 -2.39 -0.02 0.67 16 12 C -0.13 0.63 7.66 31.13 0.24 0.87 16 13 C 0.06 -0.14 2.88 31.18 0.09 -0.05 16 14 H 0.10 -0.57 5.54 -2.39 -0.01 -0.59 16 15 O -0.38 -1.26 9.92 -148.98 -1.48 -2.74 16 16 C 0.10 -0.01 1.11 -10.79 -0.01 -0.02 16 17 C -0.17 0.27 8.39 71.98 0.60 0.87 16 18 C -0.14 0.00 8.84 71.98 0.64 0.64 16 19 C -0.18 0.56 8.38 71.98 0.60 1.17 16 20 C -0.17 0.24 7.72 31.18 0.24 0.48 16 21 C -0.11 0.03 8.54 22.35 0.19 0.22 16 22 C -0.05 -0.16 6.85 36.38 0.25 0.09 16 23 N 0.04 0.35 4.45 -46.46 -0.21 0.14 16 24 O -0.19 -1.97 18.44 18.89 0.35 -1.63 16 25 O -0.17 -2.14 14.62 25.11 0.37 -1.78 16 26 C -0.04 0.01 5.26 -19.86 -0.10 -0.09 16 27 C -0.09 -0.02 1.74 71.24 0.12 0.10 16 28 O -0.54 -0.70 11.80 -129.62 -1.53 -2.23 16 29 Si 0.79 -4.04 29.91 68.60 2.05 -1.99 16 30 C -0.16 0.80 7.65 22.35 0.17 0.97 16 31 H 0.09 -1.38 7.66 -2.39 -0.02 -1.40 16 32 H 0.12 -1.31 8.14 -2.39 -0.02 -1.33 16 33 H 0.08 -1.01 7.66 -2.39 -0.02 -1.03 16 34 H 0.13 -1.26 7.67 -2.38 -0.02 -1.28 16 35 H 0.13 -1.24 7.66 -2.39 -0.02 -1.26 16 36 H 0.42 -5.07 8.71 -92.70 -0.81 -5.88 16 37 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.13 -1.42 8.11 -2.39 -0.02 -1.44 16 39 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 41 H 0.06 -0.19 7.02 -2.39 -0.02 -0.20 16 42 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.07 -0.34 6.24 -2.39 -0.01 -0.36 16 46 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.18 -0.90 5.85 -2.91 -0.02 -0.91 16 51 H 0.12 0.57 6.07 -2.39 -0.01 0.56 16 52 H 0.39 -3.40 8.70 -74.05 -0.64 -4.04 16 53 H -0.27 0.48 7.11 99.48 0.71 1.18 16 54 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 55 H 0.19 -2.36 3.36 -2.91 -0.01 -2.37 16 Total: 0.00 -34.35 447.40 1.25 -33.10 By element: Atomic # 1 Polarization: -21.00 SS G_CDS: -0.45 Total: -21.45 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.70 Total: 9.41 kcal Atomic # 7 Polarization: 2.93 SS G_CDS: -2.57 Total: 0.36 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -3.49 Total: -19.44 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.05 Total: -1.99 kcal Total: -34.35 1.25 -33.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.527 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds