Wall clock time and date at job start Tue Mar 9 2021 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 C 1.52998 * 109.46997 * 240.00117 * 2 1 3 5 5 O 1.42898 * 109.47156 * 120.00088 * 2 1 3 6 6 C 1.42894 * 113.99889 * 59.99681 * 5 2 1 7 7 H 1.09000 * 112.91103 * 18.75171 * 6 5 2 8 8 C 1.53786 * 113.61403 * 150.00166 * 6 5 2 9 9 C 1.53781 * 87.17350 * 89.15805 * 8 6 5 10 10 H 1.08997 * 113.61223 * 270.84552 * 9 8 6 11 11 N 1.46499 * 113.61225 * 139.93836 * 9 8 6 12 12 C 1.34783 * 119.99531 * 155.00207 * 11 9 8 13 13 O 1.21278 * 120.00062 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99755 * 180.02562 * 12 11 9 15 15 O 1.42895 * 109.47034 * 179.97438 * 14 12 11 16 16 C 1.35901 * 116.99884 * 180.02562 * 15 14 12 17 17 C 1.38715 * 120.05615 * 179.97438 * 16 15 14 18 18 N 1.48010 * 120.02482 * 359.95589 * 17 16 15 19 19 O 1.21799 * 119.99615 * 179.97438 * 18 17 16 20 20 O 1.21792 * 120.00189 * 0.02562 * 18 17 16 21 21 C 1.38166 * 119.94555 * 179.97438 * 17 16 15 22 22 C 1.38234 * 120.05299 * 0.02562 * 21 17 16 23 23 C 1.50710 * 119.94289 * 179.97438 * 22 21 17 24 24 O 1.42893 * 109.46987 * 300.00306 * 23 22 21 25 25 Si 1.86299 * 109.47017 * 179.97438 * 23 22 21 26 26 C 1.38294 * 120.11673 * 359.97438 * 22 21 17 27 27 C 1.38122 * 120.05051 * 359.74249 * 26 22 21 28 28 C 1.53782 * 87.08260 * 25.39213 * 9 8 6 29 29 H 1.08994 * 109.46694 * 300.00446 * 1 2 3 30 30 H 1.09004 * 109.46849 * 59.99907 * 1 2 3 31 31 H 1.08994 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46806 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47046 * 299.99381 * 3 2 1 34 34 H 1.08996 * 109.47381 * 59.99852 * 3 2 1 35 35 H 1.09008 * 109.47226 * 300.00130 * 4 2 1 36 36 H 1.09002 * 109.47702 * 59.99595 * 4 2 1 37 37 H 1.08992 * 109.47512 * 180.02562 * 4 2 1 38 38 H 1.09002 * 113.61357 * 334.56722 * 8 6 5 39 39 H 1.09002 * 113.61608 * 203.74884 * 8 6 5 40 40 H 0.96997 * 120.00777 * 335.00229 * 11 9 8 41 41 H 1.08994 * 109.47288 * 300.00303 * 14 12 11 42 42 H 1.09007 * 109.46858 * 60.00059 * 14 12 11 43 43 H 1.07996 * 119.97168 * 180.02562 * 21 17 16 44 44 H 1.09000 * 109.46454 * 60.00271 * 23 22 21 45 45 H 0.96700 * 114.00179 * 299.99719 * 24 23 22 46 46 H 1.48500 * 109.99567 * 180.02562 * 25 23 22 47 47 H 1.48498 * 110.00401 * 301.31952 * 25 23 22 48 48 H 1.07994 * 119.97343 * 180.02562 * 26 22 21 49 49 H 1.08003 * 120.02633 * 180.27652 * 27 26 22 50 50 H 1.08997 * 113.61668 * 89.11298 * 28 9 8 51 51 H 1.08998 * 113.61674 * 219.93807 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1667 6 6 1.5847 -2.0354 1.2645 7 1 1.2512 -2.4458 0.3113 8 6 2.5837 -2.9379 2.0078 9 6 1.8433 -2.5621 3.3022 10 1 2.2357 -1.6676 3.7857 11 7 1.6751 -3.6843 4.2289 12 6 1.5252 -3.4521 5.5481 13 8 1.5300 -2.3143 5.9679 14 6 1.3528 -4.6064 6.5015 15 8 1.2148 -4.1075 7.8334 16 6 1.0502 -5.0253 8.8220 17 6 0.9106 -4.6110 10.1385 18 7 0.9417 -3.1684 10.4681 19 8 0.8186 -2.8052 11.6242 20 8 1.0895 -2.3446 9.5834 21 6 0.7428 -5.5461 11.1417 22 6 0.7145 -6.8936 10.8345 23 6 0.5320 -7.9114 11.9308 24 8 1.6000 -7.7936 12.8728 25 14 0.5371 -9.6233 11.1959 26 6 0.8535 -7.3093 9.5228 27 6 1.0156 -6.3781 8.5156 28 6 0.6080 -2.2968 2.4255 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2075 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 3.6109 -2.5749 1.9713 39 1 2.4979 -3.9925 1.7461 40 1 1.6717 -4.5943 3.8932 41 1 0.4610 -5.1713 6.2305 42 1 2.2257 -5.2568 6.4461 43 1 0.6337 -5.2240 12.1667 44 1 -0.4183 -7.7357 12.4350 45 1 2.4774 -7.9380 12.4927 46 1 0.3572 -10.6362 12.2669 47 1 -0.5496 -9.7483 10.1916 48 1 0.8307 -8.3625 9.2854 49 1 1.1196 -6.7030 7.4909 50 1 -0.0192 -3.1759 2.2772 51 1 0.0393 -1.4172 2.7270 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:49:47 Heat of formation + Delta-G solvation = -88.574504 kcal Electronic energy + Delta-G solvation = -35023.979903 eV Core-core repulsion = 30088.490536 eV Total energy + Delta-G solvation = -4935.489367 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.176 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.30330 -41.82366 -41.27267 -40.34758 -39.39979 -38.12314 -37.60367 -37.35271 -34.82291 -33.53831 -33.30471 -32.23464 -29.94528 -28.44531 -28.35236 -27.83220 -26.64292 -26.62424 -25.31968 -23.94946 -22.82572 -21.85571 -21.66006 -20.53603 -20.19856 -19.78333 -19.17502 -18.64848 -18.43791 -18.10347 -17.94886 -17.58121 -17.17523 -16.82739 -16.49592 -16.30516 -16.13641 -15.94261 -15.66358 -15.55582 -15.20785 -14.86891 -14.72960 -14.36216 -14.20966 -14.03248 -13.89817 -13.73331 -13.46044 -13.44077 -13.22957 -13.05414 -12.87835 -12.72739 -12.71939 -12.66829 -12.55541 -12.36423 -12.28652 -12.25727 -12.19753 -11.95251 -11.92972 -11.72177 -11.13415 -10.95797 -10.83976 -10.56442 -10.44185 -10.10592 -9.79041 -4.99204 -1.32408 -0.24471 0.14844 0.34941 1.22141 1.27806 1.44585 1.64407 2.02459 2.05412 2.35126 2.58863 3.11789 3.24892 3.39112 3.47318 3.51401 3.58830 3.63407 3.71194 3.79369 3.80497 3.89914 3.92416 3.97078 4.02952 4.04611 4.12603 4.27406 4.29823 4.35741 4.51025 4.63124 4.63822 4.65088 4.70102 4.75515 4.77941 4.83682 4.83874 4.90580 4.91774 4.97564 5.05328 5.07080 5.09429 5.18617 5.19752 5.32597 5.35002 5.47786 5.76322 6.39996 6.40344 6.47658 6.73412 7.18271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 C -0.142 4.142 4 C -0.174 4.174 5 O -0.380 6.380 6 C 0.061 3.939 7 H 0.104 0.896 8 C -0.130 4.130 9 C 0.124 3.876 10 H 0.077 0.923 11 N -0.696 5.696 12 C 0.505 3.495 13 O -0.570 6.570 14 C 0.026 3.974 15 O -0.293 6.293 16 C 0.193 3.807 17 C -0.105 4.105 18 N 0.034 4.966 19 O -0.202 6.202 20 O -0.177 6.177 21 C -0.004 4.004 22 C -0.150 4.150 23 C -0.083 4.083 24 O -0.558 6.558 25 Si 0.801 3.199 26 C -0.004 4.004 27 C -0.187 4.187 28 C -0.167 4.167 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.425 0.575 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.109 0.891 45 H 0.398 0.602 46 H -0.306 1.306 47 H -0.263 1.263 48 H 0.190 0.810 49 H 0.208 0.792 50 H 0.117 0.883 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -14.949 -11.403 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 C -0.199 4.199 4 C -0.231 4.231 5 O -0.300 6.300 6 C 0.002 3.998 7 H 0.121 0.879 8 C -0.168 4.168 9 C 0.019 3.981 10 H 0.095 0.905 11 N -0.350 5.350 12 C 0.291 3.709 13 O -0.448 6.448 14 C -0.051 4.051 15 O -0.204 6.204 16 C 0.143 3.857 17 C -0.191 4.191 18 N 0.544 4.456 19 O -0.410 6.410 20 O -0.390 6.390 21 C -0.023 4.023 22 C -0.152 4.152 23 C -0.191 4.191 24 O -0.367 6.367 25 Si 0.704 3.296 26 C -0.022 4.022 27 C -0.206 4.206 28 C -0.205 4.205 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.264 0.736 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.127 0.873 45 H 0.248 0.752 46 H -0.235 1.235 47 H -0.189 1.189 48 H 0.207 0.793 49 H 0.225 0.775 50 H 0.135 0.865 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.443 -15.050 -10.822 18.542 hybrid contribution -0.588 1.460 0.706 1.725 sum -0.145 -13.590 -10.116 16.942 Atomic orbital electron populations 1.22445 0.95005 1.02951 1.02716 1.21700 0.93642 0.93194 0.85348 1.21811 1.01742 0.93559 1.02775 1.22425 1.01965 1.01364 0.97389 1.87980 1.73883 1.23971 1.44115 1.22942 0.95718 0.82902 0.98211 0.87878 1.23622 0.99252 1.01528 0.92410 1.22374 0.97630 0.89966 0.88152 0.90458 1.45623 1.73285 1.11200 1.04906 1.20659 0.76215 0.90078 0.83973 1.90854 1.50099 1.25740 1.78097 1.23147 1.08251 0.95440 0.78268 1.86479 1.84686 1.33124 1.16062 1.18993 0.90612 0.90644 0.85414 1.20883 1.24044 0.79250 0.94879 1.43927 0.97032 1.04565 1.00107 1.94498 1.54970 1.85850 1.05669 1.94686 1.53213 1.49627 1.41456 1.20830 0.91010 0.91883 0.98592 1.20467 1.05236 0.92559 0.96888 1.25502 0.93418 1.07986 0.92220 1.86528 1.18558 1.94709 1.36860 0.93793 0.86900 0.70281 0.78592 1.21736 0.88223 1.02109 0.90092 1.21827 1.06899 0.87430 1.04424 1.24061 0.97319 1.02759 0.96407 0.93182 0.90486 0.91461 0.92225 0.89544 0.93006 0.91120 0.90464 0.92119 0.90698 0.84838 0.73598 0.83747 0.83429 0.83322 0.87346 0.75184 1.23454 1.18891 0.79319 0.77512 0.86519 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.22 8.38 71.98 0.60 0.82 16 2 C 0.10 0.02 1.11 -10.79 -0.01 0.01 16 3 C -0.14 -0.11 8.84 71.98 0.64 0.53 16 4 C -0.17 0.60 8.38 71.98 0.60 1.21 16 5 O -0.38 -1.43 9.92 -148.98 -1.48 -2.90 16 6 C 0.06 -0.16 2.89 31.18 0.09 -0.07 16 7 H 0.10 -0.68 5.55 -2.39 -0.01 -0.70 16 8 C -0.13 0.75 7.66 31.12 0.24 0.99 16 9 C 0.12 -0.02 4.18 45.52 0.19 0.17 16 10 H 0.08 0.73 7.47 -2.39 -0.02 0.71 16 11 N -0.70 3.87 5.35 -440.03 -2.36 1.51 16 12 C 0.50 1.11 7.91 87.66 0.69 1.81 16 13 O -0.57 -9.85 16.10 16.01 0.26 -9.59 16 14 C 0.03 -0.19 5.22 71.24 0.37 0.19 16 15 O -0.29 -1.48 7.68 -63.41 -0.49 -1.97 16 16 C 0.19 0.15 6.67 22.51 0.15 0.30 16 17 C -0.11 -0.79 6.87 36.47 0.25 -0.54 16 18 N 0.03 0.60 4.45 -46.24 -0.21 0.40 16 19 O -0.20 -3.96 18.45 18.89 0.35 -3.62 16 20 O -0.18 -4.06 17.24 25.62 0.44 -3.62 16 21 C 0.00 -0.01 9.11 22.25 0.20 0.19 16 22 C -0.15 0.85 5.39 -19.85 -0.11 0.75 16 23 C -0.08 0.51 2.82 71.24 0.20 0.71 16 24 O -0.56 1.92 12.77 -148.98 -1.90 0.01 16 25 Si 0.80 -8.40 29.79 68.60 2.04 -6.36 16 26 C 0.00 0.05 8.66 22.26 0.19 0.25 16 27 C -0.19 2.09 9.04 22.36 0.20 2.30 16 28 C -0.17 0.31 7.71 31.18 0.24 0.55 16 29 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 31 H 0.07 -0.20 7.02 -2.39 -0.02 -0.22 16 32 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.07 -0.40 6.25 -2.38 -0.01 -0.42 16 36 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.13 -1.76 8.12 -2.39 -0.02 -1.78 16 40 H 0.42 -6.67 8.73 -92.71 -0.81 -7.47 16 41 H 0.15 -2.35 7.65 -2.39 -0.02 -2.37 16 42 H 0.15 -2.46 7.67 -2.38 -0.02 -2.48 16 43 H 0.15 0.66 7.61 -2.91 -0.02 0.64 16 44 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 45 H 0.40 -4.84 8.70 -74.06 -0.64 -5.48 16 46 H -0.31 0.18 7.11 99.48 0.71 0.89 16 47 H -0.26 2.27 7.11 99.48 0.71 2.98 16 48 H 0.19 -3.78 4.87 -2.91 -0.01 -3.79 16 49 H 0.21 -4.47 6.30 -2.91 -0.02 -4.49 16 50 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 51 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 Total: 0.00 -43.09 422.13 0.98 -42.11 By element: Atomic # 1 Polarization: -25.68 SS G_CDS: -0.43 Total: -26.10 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 4.75 Total: 10.13 kcal Atomic # 7 Polarization: 4.47 SS G_CDS: -2.56 Total: 1.91 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -2.82 Total: -21.69 kcal Atomic # 14 Polarization: -8.40 SS G_CDS: 2.04 Total: -6.36 kcal Total: -43.09 0.98 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.463 kcal (2) G-P(sol) polarization free energy of solvation -43.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds