Wall clock time and date at job start Tue Mar 9 2021 14:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35891 * 117.00270 * 2 1 4 4 C 1.38617 * 120.02887 * 180.25634 * 3 2 1 5 5 C 1.38654 * 119.89013 * 180.25832 * 4 3 2 6 6 O 1.35899 * 120.02947 * 179.72158 * 5 4 3 7 7 C 1.42902 * 116.99657 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.46742 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00432 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99956 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00505 * 179.97438 * 10 8 7 12 12 H 1.09005 * 112.84641 * 23.80811 * 11 10 8 13 13 C 1.53782 * 113.61510 * 154.99797 * 11 10 8 14 14 C 1.53782 * 87.07621 * 139.98537 * 13 11 10 15 15 H 1.09005 * 113.61083 * 220.01841 * 14 13 11 16 16 O 1.42904 * 113.61481 * 89.20383 * 14 13 11 17 17 C 1.42900 * 113.99737 * 149.99820 * 16 14 13 18 18 C 1.52999 * 109.47563 * 59.99852 * 17 16 14 19 19 C 1.53000 * 109.46696 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.47140 * 299.99313 * 17 16 14 21 21 C 1.53774 * 113.61779 * 252.50127 * 11 10 8 22 22 C 1.38753 * 119.94407 * 359.74790 * 5 4 3 23 23 C 1.50709 * 119.97237 * 180.02562 * 22 5 4 24 24 O 1.42902 * 109.46432 * 284.97383 * 23 22 5 25 25 Si 1.86294 * 109.47229 * 164.97628 * 23 22 5 26 26 C 1.38200 * 120.05792 * 359.97438 * 22 5 4 27 27 C 1.38157 * 120.10565 * 0.02562 * 26 22 5 28 28 H 1.09003 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46677 * 299.99602 * 1 2 3 30 30 H 1.08995 * 109.47166 * 59.99376 * 1 2 3 31 31 H 1.07993 * 120.05327 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.46975 * 299.99852 * 7 6 5 33 33 H 1.09000 * 109.46901 * 59.99626 * 7 6 5 34 34 H 0.97003 * 119.99629 * 359.97438 * 10 8 7 35 35 H 1.09001 * 113.61205 * 254.52924 * 13 11 10 36 36 H 1.08998 * 113.61520 * 25.43705 * 13 11 10 37 37 H 1.09000 * 109.46724 * 59.99839 * 18 17 16 38 38 H 1.08995 * 109.47251 * 179.97438 * 18 17 16 39 39 H 1.09005 * 109.46819 * 299.99991 * 18 17 16 40 40 H 1.08999 * 109.47738 * 59.99918 * 19 17 16 41 41 H 1.09004 * 109.47378 * 179.97438 * 19 17 16 42 42 H 1.09003 * 109.47182 * 299.99542 * 19 17 16 43 43 H 1.08998 * 109.47131 * 60.00513 * 20 17 16 44 44 H 1.08995 * 109.46991 * 180.02562 * 20 17 16 45 45 H 1.08998 * 109.47546 * 300.00713 * 20 17 16 46 46 H 1.09001 * 113.61182 * 334.56339 * 21 11 10 47 47 H 1.08997 * 113.61960 * 105.46581 * 21 11 10 48 48 H 1.08996 * 109.46897 * 44.97153 * 23 22 5 49 49 H 0.96697 * 114.00576 * 299.99230 * 24 23 22 50 50 H 1.48499 * 110.00077 * 179.97438 * 25 23 22 51 51 H 1.48510 * 109.99975 * 301.31721 * 25 23 22 52 52 H 1.07992 * 119.94591 * 180.02562 * 26 22 5 53 53 H 1.08002 * 119.96818 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4302 1.2840 -0.0054 5 6 4.0568 2.5208 0.0001 6 8 5.4137 2.5959 0.0005 7 6 6.1317 1.3603 -0.0053 8 6 7.6125 1.6399 -0.0045 9 8 8.0136 2.7845 0.0001 10 7 8.4913 0.6181 -0.0099 11 6 9.9308 0.8898 -0.0097 12 1 10.1766 1.8694 0.4003 13 6 10.7734 -0.2536 0.5799 14 6 11.7869 0.0192 -0.5441 15 1 12.2144 -0.8859 -0.9758 16 8 12.7768 0.9904 -0.1990 17 6 14.0346 0.7943 -0.8483 18 6 13.8424 0.8647 -2.3645 19 6 15.0117 1.8859 -0.4073 20 6 14.5962 -0.5773 -0.4685 21 6 10.6138 0.5940 -1.3553 22 6 3.2972 3.6820 0.0056 23 6 3.9776 5.0267 0.0109 24 8 4.5041 5.2889 1.3133 25 14 2.7440 6.3486 -0.4379 26 6 1.9173 3.6065 0.0051 27 6 1.2907 2.3752 -0.0003 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 4.0197 0.3791 -0.0091 32 1 5.8699 0.7838 0.8820 33 1 5.8700 0.7923 -0.8980 34 1 8.1705 -0.2974 -0.0140 35 1 11.1597 -0.0421 1.5769 36 1 10.2948 -1.2303 0.5086 37 1 13.4423 1.8419 -2.6350 38 1 14.8018 0.7156 -2.8597 39 1 13.1460 0.0873 -2.6790 40 1 15.1488 1.8362 0.6729 41 1 15.9713 1.7362 -0.9022 42 1 14.6115 2.8629 -0.6782 43 1 13.9000 -1.3547 -0.7830 44 1 15.5558 -0.7267 -0.9634 45 1 14.7332 -0.6275 0.6117 46 1 10.0915 -0.1509 -1.9556 47 1 10.8712 1.4897 -1.9206 48 1 4.7898 5.0258 -0.7159 49 1 3.8357 5.3046 2.0119 50 1 3.4024 7.6797 -0.4355 51 1 2.1655 6.0700 -1.7770 52 1 1.3279 4.5113 0.0090 53 1 0.2121 2.3187 -0.0002 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:50:07 Heat of formation + Delta-G solvation = -127.926524 kcal Electronic energy + Delta-G solvation = -33291.760804 eV Core-core repulsion = 28711.361630 eV Total energy + Delta-G solvation = -4580.399174 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.88665 -41.38411 -40.50680 -39.78671 -38.45867 -38.03358 -36.92408 -34.86963 -33.41297 -32.28895 -31.41911 -29.59015 -28.46865 -28.38051 -28.33723 -26.69069 -26.12274 -25.39547 -23.56488 -22.49948 -21.88978 -21.64558 -20.21924 -19.95658 -18.58751 -18.15616 -18.04817 -17.67091 -17.56902 -17.16443 -16.82749 -16.70425 -16.56698 -16.46341 -16.00226 -15.94248 -15.57915 -15.38127 -15.14664 -14.93267 -14.65484 -14.47102 -14.35539 -14.20387 -13.88435 -13.59119 -13.50388 -13.43116 -13.32873 -13.16708 -13.08327 -12.90715 -12.76706 -12.69369 -12.59828 -12.48322 -12.27608 -12.02801 -11.97045 -11.87632 -11.76383 -11.63170 -11.17763 -11.00632 -10.48861 -10.36641 -10.17248 -9.70814 -9.10802 -5.04786 0.20096 0.29446 1.30609 1.35942 1.42750 1.63776 1.97768 2.24892 2.53873 2.55939 2.57917 3.41106 3.51240 3.53610 3.59556 3.72899 3.75612 3.82475 3.87243 3.90901 3.93958 3.99339 4.01210 4.07790 4.08784 4.15901 4.23510 4.34187 4.38978 4.44078 4.46562 4.60317 4.61435 4.62292 4.64846 4.71630 4.75188 4.78998 4.80190 4.86954 4.89119 4.92481 4.99956 5.01584 5.05548 5.16475 5.22932 5.27187 5.30219 5.32511 5.40865 5.47894 6.11484 6.35352 6.35882 6.42175 6.85508 7.07988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.254 4.254 5 C 0.172 3.828 6 O -0.307 6.307 7 C 0.036 3.964 8 C 0.511 3.489 9 O -0.573 6.573 10 N -0.698 5.698 11 C 0.122 3.878 12 H 0.080 0.920 13 C -0.132 4.132 14 C 0.064 3.936 15 H 0.104 0.896 16 O -0.379 6.379 17 C 0.099 3.901 18 C -0.174 4.174 19 C -0.141 4.141 20 C -0.175 4.175 21 C -0.166 4.166 22 C -0.204 4.204 23 C -0.071 4.071 24 O -0.558 6.558 25 Si 0.797 3.203 26 C -0.031 4.031 27 C -0.237 4.237 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.423 0.577 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.391 0.609 50 H -0.304 1.304 51 H -0.279 1.279 52 H 0.167 0.833 53 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -9.092 0.117 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.118 3.882 4 C -0.273 4.273 5 C 0.126 3.874 6 O -0.219 6.219 7 C -0.041 4.041 8 C 0.298 3.702 9 O -0.451 6.451 10 N -0.351 5.351 11 C 0.018 3.982 12 H 0.098 0.902 13 C -0.170 4.170 14 C 0.005 3.995 15 H 0.122 0.878 16 O -0.299 6.299 17 C 0.061 3.939 18 C -0.231 4.231 19 C -0.198 4.198 20 C -0.232 4.232 21 C -0.205 4.205 22 C -0.205 4.205 23 C -0.179 4.179 24 O -0.366 6.366 25 Si 0.702 3.298 26 C -0.048 4.048 27 C -0.256 4.256 28 H 0.134 0.866 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.170 0.830 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.261 0.739 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.133 0.867 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.240 0.760 50 H -0.233 1.233 51 H -0.206 1.206 52 H 0.184 0.816 53 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.358 -7.526 -0.628 8.720 hybrid contribution 0.576 -0.683 -0.439 0.995 sum -3.782 -8.209 -1.067 9.101 Atomic orbital electron populations 1.23417 0.75913 1.05728 1.02793 1.86053 1.23841 1.26556 1.87927 1.18869 0.91560 0.85105 0.92696 1.20543 0.93568 0.97281 1.15893 1.18650 0.81646 0.93404 0.93727 1.86229 1.15742 1.31748 1.88191 1.22742 0.88258 0.86479 1.06668 1.20595 0.88708 0.85307 0.75637 1.90778 1.80826 1.23523 1.49983 1.45680 1.05622 1.09462 1.74382 1.22439 0.78166 0.99772 0.97858 0.90202 1.23631 0.94868 0.99237 0.99226 1.22867 0.87783 0.92392 0.96415 0.87833 1.87980 1.21695 1.52019 1.68225 1.21716 0.83696 0.96311 0.92198 1.22449 1.03252 1.02254 0.95190 1.21811 0.98370 0.97502 1.02156 1.22429 1.02337 0.95952 1.02473 1.24025 0.97378 1.02110 0.96997 1.19754 0.93890 0.93964 1.12873 1.25173 1.04396 0.99925 0.88371 1.86546 1.39315 1.93837 1.16894 0.94116 0.80258 0.72920 0.82510 1.20865 0.91432 0.98677 0.93857 1.21456 1.01818 0.91126 1.11152 0.86597 0.91022 0.91327 0.83011 0.85921 0.85956 0.73891 0.90514 0.85124 0.93132 0.90360 0.91575 0.92214 0.89439 0.92957 0.91228 0.90343 0.92104 0.86718 0.92626 0.90396 0.76012 1.23292 1.20551 0.81590 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.23 10.49 -92.33 -0.97 -1.20 16 3 C 0.16 0.30 6.68 22.49 0.15 0.45 16 4 C -0.25 -0.77 8.97 22.46 0.20 -0.57 16 5 C 0.17 1.22 6.66 22.49 0.15 1.37 16 6 O -0.31 -3.30 8.99 -73.38 -0.66 -3.96 16 7 C 0.04 0.06 5.22 71.24 0.37 0.44 16 8 C 0.51 3.91 7.91 87.66 0.69 4.60 16 9 O -0.57 -11.72 16.10 16.01 0.26 -11.46 16 10 N -0.70 0.27 5.35 -440.05 -2.36 -2.08 16 11 C 0.12 0.37 4.18 45.52 0.19 0.56 16 12 H 0.08 0.95 7.47 -2.38 -0.02 0.93 16 13 C -0.13 0.37 7.66 31.12 0.24 0.60 16 14 C 0.06 -0.04 2.88 31.12 0.09 0.05 16 15 H 0.10 -0.47 5.54 -2.38 -0.01 -0.48 16 16 O -0.38 -1.99 9.92 -148.98 -1.48 -3.46 16 17 C 0.10 0.13 1.11 -10.79 -0.01 0.12 16 18 C -0.17 0.04 8.38 71.98 0.60 0.64 16 19 C -0.14 -0.21 8.84 71.98 0.64 0.43 16 20 C -0.17 0.39 8.38 71.98 0.60 1.00 16 21 C -0.17 -0.12 7.71 31.12 0.24 0.12 16 22 C -0.20 -1.08 5.27 -19.75 -0.10 -1.19 16 23 C -0.07 -0.53 2.37 71.24 0.17 -0.36 16 24 O -0.56 -5.17 12.88 -148.98 -1.92 -7.09 16 25 Si 0.80 1.21 29.91 68.60 2.05 3.26 16 26 C -0.03 0.02 8.65 22.24 0.19 0.22 16 27 C -0.24 0.35 9.04 22.38 0.20 0.55 16 28 H 0.12 -1.12 8.14 -2.39 -0.02 -1.13 16 29 H 0.07 -0.64 7.66 -2.39 -0.02 -0.66 16 30 H 0.07 -0.59 7.66 -2.39 -0.02 -0.61 16 31 H 0.15 -0.20 6.30 -2.91 -0.02 -0.22 16 32 H 0.12 -0.51 7.66 -2.38 -0.02 -0.53 16 33 H 0.12 -0.55 7.66 -2.39 -0.02 -0.57 16 34 H 0.42 -3.91 8.73 -92.71 -0.81 -4.72 16 35 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.13 -1.24 8.12 -2.39 -0.02 -1.26 16 37 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.07 -0.11 7.02 -2.38 -0.02 -0.13 16 40 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.07 -0.29 6.24 -2.39 -0.01 -0.31 16 44 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.08 1.07 7.82 -2.39 -0.02 1.05 16 49 H 0.39 -0.39 8.70 -74.06 -0.64 -1.03 16 50 H -0.30 -2.96 7.11 99.48 0.71 -2.25 16 51 H -0.28 -1.39 7.11 99.48 0.71 -0.69 16 52 H 0.17 -1.23 5.12 -2.91 -0.01 -1.25 16 53 H 0.16 -1.18 6.29 -2.91 -0.02 -1.20 16 Total: 0.00 -31.84 425.16 0.18 -31.66 By element: Atomic # 1 Polarization: -15.21 SS G_CDS: -0.48 Total: -15.69 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.73 Total: 10.03 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -2.36 Total: -2.08 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -4.77 Total: -27.18 kcal Atomic # 14 Polarization: 1.21 SS G_CDS: 2.05 Total: 3.26 kcal Total: -31.84 0.18 -31.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.265 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds