Wall clock time and date at job start Tue Mar 9 2021 12:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34233 * 117.00152 * 2 1 4 4 O 1.20828 * 119.99301 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99996 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.84576 * 48.81028 * 5 3 2 7 7 C 1.53786 * 113.61012 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.07570 * 140.06793 * 7 5 3 9 9 H 1.09004 * 113.60931 * 219.93340 * 8 7 5 10 10 N 1.46501 * 113.61951 * 89.11816 * 8 7 5 11 11 C 1.34769 * 120.00192 * 154.99326 * 10 8 7 12 12 O 1.21276 * 120.00326 * 0.02562 * 11 10 8 13 13 C 1.50705 * 119.99544 * 179.97438 * 11 10 8 14 14 C 1.53004 * 109.46881 * 180.02562 * 13 11 10 15 15 O 1.42902 * 109.47331 * 180.02562 * 14 13 11 16 16 C 1.35900 * 116.99943 * 180.02562 * 15 14 13 17 17 C 1.38707 * 120.05163 * 180.02562 * 16 15 14 18 18 C 1.38166 * 119.94172 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.97212 * 180.02562 * 18 17 16 20 20 O 1.42892 * 109.47330 * 64.99802 * 19 18 17 21 21 Si 1.86306 * 109.47278 * 185.00247 * 19 18 17 22 22 C 1.38244 * 120.05849 * 359.72378 * 18 17 16 23 23 C 1.38288 * 120.10735 * 0.54781 * 22 18 17 24 24 C 1.38126 * 120.05387 * 359.44975 * 23 22 18 25 25 C 1.53772 * 87.08487 * 334.56528 * 8 7 5 26 26 H 1.09008 * 109.47126 * 299.99573 * 1 2 3 27 27 H 1.08998 * 109.47896 * 59.99326 * 1 2 3 28 28 H 1.09007 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.08994 * 113.61562 * 25.51529 * 7 5 3 30 30 H 1.09001 * 113.68468 * 254.62419 * 7 5 3 31 31 H 0.97009 * 119.99102 * 334.99859 * 10 8 7 32 32 H 1.08997 * 109.47379 * 60.00691 * 13 11 10 33 33 H 1.08992 * 109.47380 * 299.99898 * 13 11 10 34 34 H 1.09002 * 109.47424 * 59.99986 * 14 13 11 35 35 H 1.08998 * 109.47079 * 300.00375 * 14 13 11 36 36 H 1.08007 * 120.02994 * 359.94447 * 17 16 15 37 37 H 1.09007 * 109.47193 * 304.99864 * 19 18 17 38 38 H 0.96701 * 114.00473 * 180.02562 * 20 19 18 39 39 H 1.48500 * 109.99935 * 178.68355 * 21 19 18 40 40 H 1.48495 * 109.99306 * 299.99862 * 21 19 18 41 41 H 1.07993 * 119.94966 * 180.29953 * 22 18 17 42 42 H 1.08002 * 119.97455 * 179.73146 * 23 22 18 43 43 H 1.08000 * 120.02655 * 180.29782 * 24 23 22 44 44 H 1.09004 * 113.61852 * 139.98303 * 25 8 7 45 45 H 1.08997 * 113.61667 * 270.88946 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0232 0.6365 -0.7568 7 6 4.1077 2.7143 0.0001 8 6 5.1827 2.2256 0.9852 9 1 5.4003 2.9368 1.7821 10 7 6.3910 1.7175 0.3308 11 6 7.5684 1.7300 0.9864 12 8 7.6278 2.1614 2.1182 13 6 8.8111 1.2067 0.3133 14 6 10.0000 1.3336 1.2679 15 8 11.1786 0.8379 0.6295 16 6 12.3322 0.8785 1.3467 17 6 13.5139 0.4141 0.7883 18 6 14.6856 0.4569 1.5193 19 6 15.9700 -0.0469 0.9131 20 8 16.3303 0.7801 -0.1951 21 14 17.3231 0.0053 2.1927 22 6 14.6819 0.9672 2.8041 23 6 13.5040 1.4257 3.3651 24 6 12.3300 1.3851 2.6384 25 6 4.1936 1.1219 1.3951 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.4180 3.4399 0.4311 30 1 4.5091 3.0315 -0.9623 31 1 6.3434 1.3721 -0.5745 32 1 9.0064 1.7852 -0.5896 33 1 8.6677 0.1589 0.0495 34 1 9.8046 0.7547 2.1706 35 1 10.1436 2.3812 1.5321 36 1 13.5181 0.0190 -0.2168 37 1 15.8326 -1.0729 0.5714 38 1 17.1491 0.5135 -0.6351 39 1 18.5875 -0.5188 1.6166 40 1 17.5202 1.3988 2.6667 41 1 15.5997 1.0043 3.3722 42 1 13.5028 1.8199 4.3706 43 1 11.4112 1.7477 3.0752 44 1 4.6643 0.1523 1.5583 45 1 3.5274 1.4123 2.2074 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_4549614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:07 Heat of formation + Delta-G solvation = -132.857060 kcal Electronic energy + Delta-G solvation = -27417.392535 eV Core-core repulsion = 23175.166273 eV Total energy + Delta-G solvation = -4242.226262 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.06748 -41.35646 -40.87404 -39.38352 -38.91913 -37.48202 -37.42266 -34.48615 -33.14726 -32.59904 -30.84181 -29.41887 -27.30675 -26.86755 -26.83281 -25.24864 -23.66139 -22.61516 -22.08716 -21.47553 -20.41741 -19.27403 -18.85885 -18.56357 -18.09384 -17.67793 -17.45233 -17.41603 -17.29639 -17.09523 -16.81983 -16.06931 -15.84461 -15.66784 -15.41091 -15.09346 -14.66272 -14.53324 -14.42544 -14.35848 -14.10395 -13.91633 -13.68043 -13.50172 -13.44374 -13.15155 -12.95788 -12.90498 -12.82551 -12.33763 -11.97715 -11.88891 -11.83787 -11.79708 -11.76732 -11.66013 -11.39849 -11.09137 -10.52998 -10.18556 -9.92170 -9.26651 -4.90570 0.19815 0.39671 1.05096 1.28940 1.49690 1.61303 1.67131 1.72638 1.95816 2.44501 2.62854 3.22159 3.31762 3.39076 3.56257 3.65096 3.75149 3.77685 3.85179 3.92721 3.98660 4.06102 4.11295 4.23444 4.24838 4.26270 4.27228 4.36816 4.48113 4.50040 4.62362 4.64024 4.67325 4.70038 4.72092 4.77719 4.82712 4.88381 4.98106 5.00048 5.25189 5.33370 5.38000 5.45941 5.47291 5.69673 6.33415 6.44325 6.59041 6.63778 7.14470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.105 4.105 6 H 0.155 0.845 7 C -0.119 4.119 8 C 0.123 3.877 9 H 0.095 0.905 10 N -0.697 5.697 11 C 0.525 3.475 12 O -0.580 6.580 13 C -0.132 4.132 14 C 0.072 3.928 15 O -0.323 6.323 16 C 0.118 3.882 17 C -0.141 4.141 18 C -0.047 4.047 19 C -0.089 4.089 20 O -0.559 6.559 21 Si 0.771 3.229 22 C -0.161 4.161 23 C -0.076 4.076 24 C -0.211 4.211 25 C -0.128 4.128 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.422 0.578 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.396 0.604 39 H -0.284 1.284 40 H -0.298 1.298 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.139 0.861 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -5.661 -1.667 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.124 4.124 6 H 0.172 0.828 7 C -0.157 4.157 8 C 0.017 3.983 9 H 0.113 0.887 10 N -0.350 5.350 11 C 0.313 3.687 12 O -0.460 6.460 13 C -0.171 4.171 14 C -0.004 4.004 15 O -0.237 6.237 16 C 0.073 3.927 17 C -0.160 4.160 18 C -0.048 4.048 19 C -0.197 4.197 20 O -0.369 6.369 21 Si 0.676 3.324 22 C -0.179 4.179 23 C -0.094 4.094 24 C -0.229 4.229 25 C -0.167 4.167 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.260 0.740 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.246 0.754 39 H -0.211 1.211 40 H -0.226 1.226 41 H 0.160 0.840 42 H 0.171 0.829 43 H 0.157 0.843 44 H 0.113 0.887 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.255 -4.536 -0.699 4.596 hybrid contribution -0.305 0.450 -1.379 1.482 sum -0.559 -4.086 -2.078 4.618 Atomic orbital electron populations 1.23520 0.75160 1.05587 1.02392 1.86521 1.24682 1.33267 1.83484 1.24191 0.92807 0.80953 0.70915 1.90676 1.67982 1.37501 1.46756 1.22803 0.85583 1.01549 1.02439 0.82782 1.23288 0.96289 0.94561 1.01544 1.21681 0.83868 0.96279 0.96497 0.88667 1.45492 1.06396 1.63848 1.19215 1.20620 0.85229 0.77186 0.85667 1.90751 1.86635 1.48138 1.20428 1.21436 0.89259 1.06399 1.00054 1.22475 0.82398 0.99519 0.95994 1.85946 1.15350 1.79698 1.42670 1.19098 0.86211 0.96407 0.91013 1.20337 0.89886 1.04682 1.01065 1.19282 0.93407 0.98030 0.94046 1.25094 1.01442 0.96664 0.96523 1.86551 1.47294 1.57164 1.45860 0.93978 0.74520 0.81431 0.82498 1.21161 0.99419 1.01871 0.95415 1.21226 0.91089 0.96458 1.00598 1.21555 1.00846 1.06023 0.94498 1.23356 0.97501 1.01286 0.94551 0.92215 0.91994 0.85368 0.88515 0.87874 0.74017 0.85508 0.85092 0.91350 0.91913 0.85165 0.88524 0.75387 1.21108 1.22601 0.83991 0.82902 0.84276 0.88736 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.55 113.37 1.20 1.15 16 2 O -0.36 -0.62 10.57 -51.45 -0.54 -1.16 16 3 C 0.47 1.13 7.49 71.24 0.53 1.67 16 4 O -0.54 -4.92 15.65 21.96 0.34 -4.58 16 5 C -0.11 0.53 4.13 -11.01 -0.05 0.48 16 6 H 0.15 -1.67 8.14 -2.39 -0.02 -1.69 16 7 C -0.12 0.57 7.15 31.12 0.22 0.80 16 8 C 0.12 -0.47 4.32 45.51 0.20 -0.28 16 9 H 0.10 0.08 7.46 -2.39 -0.02 0.06 16 10 N -0.70 4.75 5.26 -440.05 -2.32 2.43 16 11 C 0.53 -0.73 7.83 87.66 0.69 -0.04 16 12 O -0.58 -4.67 15.58 -3.02 -0.05 -4.72 16 13 C -0.13 0.74 6.07 29.85 0.18 0.92 16 14 C 0.07 0.04 4.03 71.98 0.29 0.33 16 15 O -0.32 -1.40 10.14 -92.42 -0.94 -2.34 16 16 C 0.12 0.72 6.69 22.50 0.15 0.87 16 17 C -0.14 -0.88 9.62 22.36 0.22 -0.67 16 18 C -0.05 -0.21 5.38 -19.88 -0.11 -0.32 16 19 C -0.09 -0.06 2.79 71.24 0.20 0.14 16 20 O -0.56 -1.94 12.81 -148.98 -1.91 -3.85 16 21 Si 0.77 -1.17 29.86 68.60 2.05 0.87 16 22 C -0.16 -0.42 8.67 22.28 0.19 -0.23 16 23 C -0.08 -0.16 10.04 22.26 0.22 0.07 16 24 C -0.21 -0.85 9.04 22.36 0.20 -0.65 16 25 C -0.13 0.55 7.43 31.12 0.23 0.78 16 26 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 27 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 28 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 29 H 0.10 -0.09 7.44 -2.39 -0.02 -0.10 16 30 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 31 H 0.42 -5.70 8.70 -92.70 -0.81 -6.50 16 32 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 33 H 0.13 -1.28 8.14 -2.39 -0.02 -1.30 16 34 H 0.07 0.10 7.62 -2.39 -0.02 0.08 16 35 H 0.06 0.15 7.62 -2.39 -0.02 0.13 16 36 H 0.13 0.72 8.06 -2.91 -0.02 0.69 16 37 H 0.10 -0.33 7.96 -2.38 -0.02 -0.35 16 38 H 0.40 -1.99 8.74 -74.06 -0.65 -2.63 16 39 H -0.28 -0.60 7.11 99.48 0.71 0.10 16 40 H -0.30 -1.69 7.04 99.48 0.70 -0.99 16 41 H 0.14 -0.16 4.86 -2.91 -0.01 -0.17 16 42 H 0.15 -0.47 8.06 -2.91 -0.02 -0.50 16 43 H 0.14 0.27 6.30 -2.91 -0.02 0.25 16 44 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.09 -0.22 8.10 -2.39 -0.02 -0.24 16 Total: 0.00 -25.90 381.28 0.82 -25.08 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -0.39 Total: -16.77 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.57 Total: 5.04 kcal Atomic # 7 Polarization: 4.75 SS G_CDS: -2.32 Total: 2.43 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -3.09 Total: -16.65 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.05 Total: 0.87 kcal Total: -25.90 0.82 -25.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_4549614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.776 kcal (2) G-P(sol) polarization free energy of solvation -25.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds