Wall clock time and date at job start Tue Mar 9 2021 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85021 * 311.18935 * 5 3 2 7 7 C 1.53781 * 113.61886 * 82.49953 * 5 3 2 8 8 C 1.53778 * 87.08214 * 139.98186 * 7 5 3 9 9 H 1.08996 * 113.61290 * 220.01861 * 8 7 5 10 10 N 1.46504 * 113.61613 * 89.11590 * 8 7 5 11 11 C 1.34777 * 119.99907 * 107.49882 * 10 8 7 12 12 O 1.21285 * 120.00138 * 0.02562 * 11 10 8 13 13 C 1.50704 * 119.99914 * 180.02562 * 11 10 8 14 14 C 1.52993 * 109.46985 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47318 * 180.02562 * 14 13 11 16 16 O 1.42895 * 109.47758 * 180.02562 * 15 14 13 17 17 C 1.35905 * 117.00398 * 180.02562 * 16 15 14 18 18 C 1.38705 * 120.05319 * 179.97438 * 17 16 15 19 19 C 1.38171 * 119.94172 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.97212 * 180.02562 * 19 18 17 21 21 O 1.42896 * 109.47301 * 300.00295 * 20 19 18 22 22 Si 1.86302 * 109.46893 * 180.02562 * 20 19 18 23 23 C 1.38243 * 120.05449 * 0.02562 * 19 18 17 24 24 C 1.38288 * 120.11303 * 0.02562 * 23 19 18 25 25 C 1.38128 * 120.05369 * 359.68011 * 24 23 19 26 26 C 1.53777 * 87.08292 * 334.56929 * 8 7 5 27 27 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 29 29 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 30 30 H 1.08999 * 113.60871 * 254.53185 * 7 5 3 31 31 H 1.09001 * 113.61041 * 25.43090 * 7 5 3 32 32 H 0.97001 * 119.99683 * 287.50409 * 10 8 7 33 33 H 1.09002 * 109.47053 * 300.00512 * 13 11 10 34 34 H 1.09003 * 109.46632 * 60.00288 * 13 11 10 35 35 H 1.09002 * 109.47678 * 300.00172 * 14 13 11 36 36 H 1.09003 * 109.47165 * 60.00657 * 14 13 11 37 37 H 1.09009 * 109.47192 * 300.00810 * 15 14 13 38 38 H 1.09006 * 109.46893 * 59.99902 * 15 14 13 39 39 H 1.08002 * 120.03098 * 359.97438 * 18 17 16 40 40 H 1.09000 * 109.47035 * 60.00307 * 20 19 18 41 41 H 0.96701 * 113.99726 * 299.99355 * 21 20 19 42 42 H 1.48491 * 109.99942 * 58.68244 * 22 20 19 43 43 H 1.48499 * 109.99939 * 180.02562 * 22 20 19 44 44 H 1.08004 * 119.94460 * 180.02562 * 23 19 18 45 45 H 1.08000 * 119.97326 * 179.97438 * 24 23 19 46 46 H 1.07997 * 120.02563 * 180.31868 * 25 24 23 47 47 H 1.09004 * 113.61263 * 270.88749 * 26 8 7 48 48 H 1.08997 * 113.61751 * 139.98484 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1907 1.1236 -1.3978 8 6 5.1808 2.2268 -0.9886 9 1 5.3956 2.9383 -1.7858 10 7 6.3904 1.7178 -0.3373 11 6 7.5664 1.7310 -0.9955 12 8 7.6235 2.1647 -2.1267 13 6 8.8106 1.2068 -0.3258 14 6 9.9974 1.3348 -1.2829 15 6 11.2604 0.8021 -0.6033 16 8 12.3690 0.9222 -1.4969 17 6 13.5757 0.4904 -1.0446 18 6 14.6945 0.5768 -1.8599 19 6 15.9203 0.1376 -1.3976 20 6 17.1364 0.2317 -2.2826 21 8 16.9212 -0.5323 -3.4708 22 14 18.6187 -0.4380 -1.3743 23 6 16.0320 -0.3881 -0.1239 24 6 14.9178 -0.4763 0.6904 25 6 13.6913 -0.0330 0.2351 26 6 4.1079 2.7141 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 4.6610 0.1543 -1.5633 31 1 3.5227 1.4150 -2.2083 32 1 6.3448 1.3712 0.5675 33 1 9.0078 1.7842 0.5775 34 1 8.6676 0.1586 -0.0631 35 1 9.8000 0.7572 -2.1859 36 1 10.1405 2.3829 -1.5460 37 1 11.4580 1.3794 0.3000 38 1 11.1170 -0.2460 -0.3404 39 1 14.6076 0.9871 -2.8552 40 1 17.3129 1.2741 -2.5479 41 1 16.7574 -1.4717 -3.3100 42 1 18.3775 -1.8490 -0.9795 43 1 19.8248 -0.3503 -2.2361 44 1 16.9910 -0.7305 0.2358 45 1 15.0075 -0.8878 1.6849 46 1 12.8225 -0.0974 0.8734 47 1 3.4173 3.4404 -0.4291 48 1 4.5113 3.0288 0.9619 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_4549616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:11 Heat of formation + Delta-G solvation = -140.369255 kcal Electronic energy + Delta-G solvation = -28969.804620 eV Core-core repulsion = 24571.714986 eV Total energy + Delta-G solvation = -4398.089634 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06306 -41.28895 -40.91093 -39.40419 -39.08020 -37.39252 -37.33999 -34.96366 -34.37305 -32.46312 -31.25693 -29.60568 -28.53487 -27.03381 -26.98572 -26.62733 -23.88528 -23.59748 -22.49534 -21.93378 -21.60352 -20.48549 -19.25648 -18.96852 -18.21934 -17.86057 -17.76449 -17.53779 -17.39555 -17.16777 -17.06617 -16.81892 -16.44346 -16.13003 -15.68321 -15.47302 -15.19080 -14.96121 -14.76498 -14.70581 -14.25540 -14.19300 -14.05469 -13.80968 -13.57618 -13.52309 -13.33050 -13.13666 -13.04926 -12.86883 -12.75458 -12.42969 -12.29402 -11.97935 -11.91674 -11.87591 -11.82022 -11.69077 -11.54824 -11.36217 -10.97627 -10.64005 -10.23674 -9.91202 -9.22256 -4.94449 0.22104 0.42892 1.11222 1.28073 1.51367 1.61612 1.66253 1.78094 1.97124 2.26615 2.68576 3.10124 3.19029 3.38096 3.44850 3.54897 3.63146 3.64149 3.75073 3.78337 3.85771 3.90931 4.00842 4.09236 4.12664 4.13728 4.20337 4.20509 4.22929 4.34395 4.36135 4.42483 4.49237 4.55512 4.56833 4.59922 4.65686 4.68591 4.72031 4.86634 4.91904 4.98719 5.12300 5.28681 5.34829 5.37892 5.38593 5.45302 5.70743 6.30705 6.41682 6.41944 6.69010 7.09743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.503 6.503 5 C -0.113 4.113 6 H 0.125 0.875 7 C -0.132 4.132 8 C 0.121 3.879 9 H 0.114 0.886 10 N -0.717 5.717 11 C 0.518 3.482 12 O -0.529 6.529 13 C -0.137 4.137 14 C -0.106 4.106 15 C 0.060 3.940 16 O -0.311 6.311 17 C 0.132 3.868 18 C -0.126 4.126 19 C -0.079 4.079 20 C -0.077 4.077 21 O -0.528 6.528 22 Si 0.689 3.311 23 C -0.156 4.156 24 C -0.074 4.074 25 C -0.205 4.205 26 C -0.125 4.125 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.403 0.597 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.376 0.624 42 H -0.260 1.260 43 H -0.257 1.257 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.112 0.888 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -2.665 7.243 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.391 6.391 5 C -0.132 4.132 6 H 0.143 0.857 7 C -0.171 4.171 8 C 0.015 3.985 9 H 0.132 0.868 10 N -0.369 5.369 11 C 0.305 3.695 12 O -0.405 6.405 13 C -0.178 4.178 14 C -0.144 4.144 15 C -0.016 4.016 16 O -0.225 6.225 17 C 0.087 3.913 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.186 4.186 21 O -0.334 6.334 22 Si 0.590 3.410 23 C -0.174 4.174 24 C -0.092 4.092 25 C -0.224 4.224 26 C -0.163 4.163 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.224 0.776 42 H -0.185 1.185 43 H -0.182 1.182 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.131 0.869 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.121 -1.986 5.953 6.277 hybrid contribution -1.208 -1.134 0.222 1.672 sum -1.330 -3.120 6.175 7.045 Atomic orbital electron populations 1.23329 0.75908 1.04025 1.02746 1.86515 1.23768 1.33360 1.83794 1.23572 0.91687 0.81441 0.72139 1.90694 1.66975 1.36421 1.44977 1.22652 0.87654 1.01054 1.01800 0.85730 1.23397 0.97890 1.01208 0.94578 1.21790 0.83645 0.96369 0.96658 0.86770 1.45708 1.07548 1.65003 1.18623 1.20613 0.84480 0.78047 0.86407 1.90768 1.85851 1.45463 1.18372 1.21532 0.92474 1.03581 1.00165 1.21235 0.90204 1.04125 0.98815 1.22821 0.85000 1.01039 0.92706 1.86086 1.14811 1.78880 1.42711 1.19019 0.85418 0.94298 0.92598 1.20277 0.89763 1.03895 1.00547 1.20088 0.94979 0.98046 0.94833 1.25094 1.02055 1.01322 0.90178 1.86612 1.92949 1.24163 1.29702 0.94917 0.76600 0.83801 0.85670 1.20919 0.98841 1.03345 0.94251 1.20910 0.91654 0.97087 0.99528 1.21315 0.99488 1.05700 0.95866 1.23365 0.97047 0.94803 1.01036 0.87842 0.91712 0.91727 0.89445 0.88305 0.76265 0.88201 0.88246 0.89769 0.89717 0.91716 0.91795 0.84788 0.86182 0.77614 1.18501 1.18213 0.85402 0.85221 0.85259 0.86934 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.33 10.56 -39.24 -0.41 -0.75 16 3 C 0.47 0.54 7.48 36.00 0.27 0.81 16 4 O -0.50 -2.05 15.65 -18.76 -0.29 -2.35 16 5 C -0.11 0.24 4.14 -90.96 -0.38 -0.14 16 6 H 0.12 -0.53 8.14 -51.93 -0.42 -0.96 16 7 C -0.13 0.25 7.43 -25.92 -0.19 0.06 16 8 C 0.12 -0.21 4.32 -67.12 -0.29 -0.50 16 9 H 0.11 0.01 7.47 -51.93 -0.39 -0.38 16 10 N -0.72 2.11 5.26 -53.02 -0.28 1.83 16 11 C 0.52 -0.29 7.83 -10.98 -0.09 -0.38 16 12 O -0.53 -2.22 15.58 5.55 0.09 -2.13 16 13 C -0.14 0.50 5.70 -27.88 -0.16 0.34 16 14 C -0.11 0.11 4.87 -26.74 -0.13 -0.02 16 15 C 0.06 -0.09 4.74 37.16 0.18 0.09 16 16 O -0.31 -0.65 10.14 -19.44 -0.20 -0.84 16 17 C 0.13 0.24 6.69 -39.22 -0.26 -0.02 16 18 C -0.13 -0.27 9.55 -39.43 -0.38 -0.64 16 19 C -0.08 -0.06 5.39 -104.64 -0.56 -0.63 16 20 C -0.08 -0.02 2.82 36.01 0.10 0.08 16 21 O -0.53 -0.95 12.77 -35.23 -0.45 -1.40 16 22 Si 0.69 -0.57 29.78 -169.99 -5.06 -5.63 16 23 C -0.16 0.04 8.67 -39.56 -0.34 -0.30 16 24 C -0.07 0.04 10.04 -39.60 -0.40 -0.35 16 25 C -0.20 0.00 9.04 -39.43 -0.36 -0.36 16 26 C -0.12 0.28 7.15 -25.92 -0.19 0.10 16 27 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 28 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 29 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16 30 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.10 -0.14 8.09 -51.93 -0.42 -0.56 16 32 H 0.40 -2.37 8.70 -40.82 -0.36 -2.73 16 33 H 0.10 -0.56 8.14 -51.93 -0.42 -0.99 16 34 H 0.10 -0.56 8.14 -51.93 -0.42 -0.99 16 35 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 36 H 0.08 0.05 8.10 -51.93 -0.42 -0.37 16 37 H 0.06 -0.18 7.65 -51.92 -0.40 -0.58 16 38 H 0.06 -0.18 7.67 -51.93 -0.40 -0.58 16 39 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 40 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 41 H 0.38 -0.40 8.70 45.56 0.40 0.00 16 42 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 43 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 44 H 0.13 -0.26 4.87 -52.48 -0.26 -0.52 16 45 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 46 H 0.13 -0.28 6.30 -52.49 -0.33 -0.61 16 47 H 0.11 -0.10 7.43 -51.93 -0.39 -0.48 16 48 H 0.09 -0.29 8.14 -51.93 -0.42 -0.72 16 LS Contribution 402.66 15.07 6.07 6.07 Total: 0.00 -10.75 402.66 -9.86 -20.61 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -7.21 Total: -14.57 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.11 Total: -0.83 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -0.28 Total: 1.83 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.27 Total: -7.48 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.06 Total: -5.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -10.75 -9.86 -20.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_4549616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.755 kcal (2) G-P(sol) polarization free energy of solvation -10.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds