Wall clock time and date at job start Tue Mar 9 2021 12:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 117.00035 * 2 1 4 4 O 1.20832 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00042 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.84755 * 48.80555 * 5 3 2 7 7 C 1.53784 * 113.61264 * 179.97438 * 5 3 2 8 8 C 1.53777 * 87.07802 * 140.06742 * 7 5 3 9 9 H 1.09007 * 113.61321 * 219.93537 * 8 7 5 10 10 N 1.46503 * 113.61811 * 89.11864 * 8 7 5 11 11 C 1.34776 * 120.00351 * 155.00060 * 10 8 7 12 12 O 1.21696 * 119.99925 * 359.97438 * 11 10 8 13 13 C 1.46648 * 119.99948 * 180.02562 * 11 10 8 14 14 C 1.36546 * 125.98559 * 179.97438 * 13 11 10 15 15 C 1.50700 * 126.65033 * 0.02562 * 14 13 11 16 16 C 1.40372 * 106.70702 * 180.02562 * 14 13 11 17 17 C 1.35124 * 107.11321 * 359.97438 * 16 14 13 18 18 C 1.50704 * 125.61462 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.46992 * 90.00372 * 18 17 16 20 20 C 1.35905 * 116.99604 * 179.97438 * 19 18 17 21 21 C 1.38722 * 120.05728 * 359.72917 * 20 19 18 22 22 C 1.38150 * 119.94161 * 179.74227 * 21 20 19 23 23 C 1.38261 * 120.05672 * 0.50783 * 22 21 20 24 24 C 1.50696 * 119.94689 * 179.74644 * 23 22 21 25 25 O 1.42904 * 109.47348 * 245.02043 * 24 23 22 26 26 Si 1.86301 * 109.47207 * 5.01877 * 24 23 22 27 27 C 1.38268 * 120.10988 * 359.76619 * 23 22 21 28 28 C 1.38139 * 120.05525 * 359.97438 * 27 23 22 29 29 O 1.33926 * 108.77039 * 0.23292 * 17 16 14 30 30 C 1.53776 * 113.68973 * 277.53516 * 5 3 2 31 31 H 1.08997 * 109.47125 * 300.00249 * 1 2 3 32 32 H 1.09006 * 109.47233 * 59.99600 * 1 2 3 33 33 H 1.08995 * 109.46974 * 180.02562 * 1 2 3 34 34 H 1.09002 * 113.61868 * 25.51726 * 7 5 3 35 35 H 1.09001 * 113.69116 * 254.62311 * 7 5 3 36 36 H 0.96994 * 119.99518 * 334.99308 * 10 8 7 37 37 H 1.09004 * 109.46824 * 270.00459 * 15 14 13 38 38 H 1.09002 * 109.46524 * 29.99425 * 15 14 13 39 39 H 1.08994 * 109.47617 * 149.99381 * 15 14 13 40 40 H 1.07999 * 126.43988 * 179.97438 * 16 14 13 41 41 H 1.08996 * 109.46943 * 330.00279 * 18 17 16 42 42 H 1.08999 * 109.47285 * 210.00419 * 18 17 16 43 43 H 1.08006 * 120.03385 * 359.97438 * 21 20 19 44 44 H 1.08007 * 119.97071 * 180.23081 * 22 21 20 45 45 H 1.08999 * 109.47840 * 125.02132 * 24 23 22 46 46 H 0.96702 * 113.99479 * 59.99925 * 25 24 23 47 47 H 1.48501 * 109.99980 * 58.68165 * 26 24 23 48 48 H 1.48500 * 110.00197 * 180.02562 * 26 24 23 49 49 H 1.07994 * 119.97151 * 179.97438 * 27 23 22 50 50 H 1.08005 * 120.02930 * 179.97438 * 28 27 23 51 51 H 1.08997 * 113.61132 * 105.46245 * 30 5 3 52 52 H 1.09002 * 113.61565 * 334.55347 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0233 0.6365 -0.7568 7 6 4.1078 2.7142 -0.0011 8 6 5.1828 2.2265 0.9844 9 1 5.4003 2.9384 1.7807 10 7 6.3910 1.7178 0.3305 11 6 7.5685 1.7308 0.9861 12 8 7.6281 2.1655 2.1212 13 6 8.7780 1.2221 0.3313 14 6 10.0283 1.1777 0.8783 15 6 10.4235 1.6379 2.2579 16 6 10.8744 0.6205 -0.0933 17 6 10.1130 0.3520 -1.1768 18 6 10.6038 -0.2558 -2.4656 19 8 10.5044 -1.6793 -2.3890 20 6 10.9091 -2.3854 -3.4775 21 6 11.3865 -1.7216 -4.5981 22 6 11.8022 -2.4419 -5.7012 23 6 11.7329 -3.8227 -5.6929 24 6 12.1817 -4.6057 -6.8997 25 8 11.0613 -5.2847 -7.4707 26 14 12.9104 -3.4423 -8.1591 27 6 11.2521 -4.4864 -4.5793 28 6 10.8402 -3.7710 -3.4717 29 8 8.8514 0.7202 -0.9189 30 6 4.1936 1.1225 1.3952 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.4181 3.4404 0.4292 35 1 4.5093 3.0308 -0.9638 36 1 6.3435 1.3716 -0.5743 37 1 10.7134 2.6880 2.2214 38 1 9.5791 1.5175 2.9367 39 1 11.2633 1.0410 2.6134 40 1 11.9346 0.4402 0.0065 41 1 11.6436 0.0277 -2.6281 42 1 9.9946 0.1069 -3.2935 43 1 11.4367 -0.6427 -4.6069 44 1 12.1775 -1.9257 -6.5726 45 1 12.9344 -5.3350 -6.6005 46 1 10.3508 -4.6962 -7.7604 47 1 14.0568 -2.7067 -7.5675 48 1 13.3564 -4.2021 -9.3545 49 1 11.1985 -5.5650 -4.5754 50 1 10.4643 -4.2898 -2.6022 51 1 4.6643 0.1531 1.5588 52 1 3.5274 1.4133 2.2074 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_4549632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:16 Heat of formation + Delta-G solvation = -109.064655 kcal Electronic energy + Delta-G solvation = -36380.904531 eV Core-core repulsion = 31280.811753 eV Total energy + Delta-G solvation = -5100.092778 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.165 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.93253 -42.05939 -41.27921 -40.85469 -39.26215 -39.14646 -37.47781 -37.16330 -35.43001 -34.42681 -33.13517 -32.03429 -31.49662 -29.60019 -28.87574 -28.33459 -26.89026 -26.77833 -26.16202 -24.20229 -23.26594 -22.68673 -22.34320 -22.23180 -20.92679 -20.42155 -19.47659 -19.44194 -18.73843 -18.31283 -17.91802 -17.51634 -17.46493 -17.32858 -17.17504 -16.86292 -16.59133 -16.21798 -15.97439 -15.83425 -15.68569 -15.39566 -15.09896 -15.06996 -14.65857 -14.58394 -14.33475 -14.30086 -14.20932 -14.10026 -13.80529 -13.72822 -13.69523 -13.49909 -13.48638 -13.40684 -13.16482 -12.87991 -12.80692 -12.24849 -12.05131 -12.01976 -11.91226 -11.86528 -11.80397 -11.73483 -11.41944 -11.35493 -10.79978 -10.39008 -10.37746 -10.02027 -9.71661 -9.21923 -4.98486 -0.26526 0.29588 0.32930 0.97004 1.04357 1.33633 1.35023 1.65704 1.70449 1.90196 1.93498 1.99908 2.38253 2.67748 3.18321 3.27772 3.29924 3.58367 3.58820 3.64555 3.67376 3.73406 3.73821 3.83599 3.96911 4.02457 4.04948 4.10680 4.24653 4.27431 4.30185 4.33212 4.43013 4.45435 4.48500 4.51309 4.57134 4.61434 4.66565 4.68856 4.70280 4.71561 4.74949 4.84867 4.92252 4.97666 4.99777 5.08737 5.17753 5.27782 5.28900 5.32407 5.40174 5.52501 5.67716 5.71319 6.28526 6.30763 6.62942 6.81103 6.88384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.536 6.536 5 C -0.108 4.108 6 H 0.148 0.852 7 C -0.116 4.116 8 C 0.122 3.878 9 H 0.107 0.893 10 N -0.691 5.691 11 C 0.608 3.392 12 O -0.541 6.541 13 C -0.093 4.093 14 C -0.094 4.094 15 C -0.096 4.096 16 C -0.189 4.189 17 C 0.013 3.987 18 C 0.135 3.865 19 O -0.326 6.326 20 C 0.126 3.874 21 C -0.201 4.201 22 C -0.076 4.076 23 C -0.161 4.161 24 C -0.071 4.071 25 O -0.558 6.558 26 Si 0.777 3.223 27 C -0.062 4.062 28 C -0.163 4.163 29 O -0.158 6.158 30 C -0.128 4.128 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.418 0.582 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.181 0.819 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.103 0.897 46 H 0.395 0.605 47 H -0.284 1.284 48 H -0.305 1.305 49 H 0.132 0.868 50 H 0.131 0.869 51 H 0.090 0.910 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 0.933 -4.456 4.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.426 6.426 5 C -0.127 4.127 6 H 0.165 0.835 7 C -0.154 4.154 8 C 0.017 3.983 9 H 0.125 0.875 10 N -0.342 5.342 11 C 0.396 3.604 12 O -0.420 6.420 13 C -0.145 4.145 14 C -0.097 4.097 15 C -0.152 4.152 16 C -0.208 4.208 17 C -0.039 4.039 18 C 0.061 3.939 19 O -0.241 6.241 20 C 0.081 3.919 21 C -0.219 4.219 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.181 4.181 25 O -0.366 6.366 26 Si 0.683 3.317 27 C -0.080 4.080 28 C -0.181 4.181 29 O -0.054 6.054 30 C -0.166 4.166 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.198 0.802 41 H 0.146 0.854 42 H 0.125 0.875 43 H 0.179 0.821 44 H 0.169 0.831 45 H 0.120 0.880 46 H 0.245 0.755 47 H -0.210 1.210 48 H -0.233 1.233 49 H 0.150 0.850 50 H 0.149 0.851 51 H 0.108 0.892 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.318 1.154 -3.984 4.353 hybrid contribution -0.211 -0.639 0.260 0.721 sum 1.107 0.515 -3.724 3.919 Atomic orbital electron populations 1.23527 0.75057 1.05583 1.02482 1.86525 1.24775 1.33268 1.83478 1.24069 0.92587 0.80996 0.70985 1.90674 1.67878 1.37371 1.46671 1.22786 0.85919 1.01633 1.02347 0.83474 1.23292 0.96076 0.94550 1.01433 1.21819 0.83135 0.96559 0.96777 0.87518 1.45462 1.06517 1.63238 1.18980 1.16541 0.81486 0.77707 0.84693 1.90872 1.85245 1.47808 1.18113 1.21772 0.96598 1.11186 0.84940 1.20967 0.91427 0.98632 0.98682 1.20460 1.02711 1.01869 0.90182 1.21884 1.02640 1.04408 0.91875 1.22384 0.81411 1.01728 0.98346 1.21266 1.03526 0.77870 0.91232 1.86110 1.80948 1.19578 1.37462 1.19076 0.95112 0.91432 0.86294 1.21497 1.05191 1.01909 0.93316 1.21046 0.97154 0.92726 0.98372 1.20334 1.04377 0.94400 0.97095 1.25130 0.93126 1.02012 0.97852 1.86472 1.30657 1.38138 1.81378 0.93832 0.82651 0.79855 0.75339 1.20921 0.95354 1.00369 0.91405 1.20621 1.05672 0.91369 1.00476 1.83955 1.30281 1.61806 1.29360 1.23381 0.97448 1.01042 0.94766 0.92074 0.91923 0.85441 0.87680 0.88020 0.74494 0.90080 0.91040 0.89629 0.80161 0.85425 0.87490 0.82087 0.83086 0.87994 0.75522 1.21035 1.23313 0.85020 0.85093 0.89153 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.97 10.57 -51.41 -0.54 -1.51 16 3 C 0.47 1.53 7.49 71.24 0.53 2.06 16 4 O -0.54 -5.00 15.65 21.95 0.34 -4.66 16 5 C -0.11 0.35 4.13 -11.01 -0.05 0.31 16 6 H 0.15 -1.14 8.14 -2.39 -0.02 -1.16 16 7 C -0.12 0.43 7.15 31.12 0.22 0.65 16 8 C 0.12 -0.26 4.33 45.53 0.20 -0.06 16 9 H 0.11 0.09 7.46 -2.38 -0.02 0.07 16 10 N -0.69 1.17 5.26 -443.95 -2.33 -1.17 16 11 C 0.61 2.79 7.79 86.44 0.67 3.47 16 12 O -0.54 -5.66 14.34 -4.33 -0.06 -5.72 16 13 C -0.09 -0.36 7.13 24.07 0.17 -0.19 16 14 C -0.09 -0.31 6.20 -19.74 -0.12 -0.43 16 15 C -0.10 -0.20 9.82 71.24 0.70 0.50 16 16 C -0.19 0.10 10.73 22.07 0.24 0.34 16 17 C 0.01 -0.02 6.94 24.97 0.17 0.16 16 18 C 0.13 -0.85 5.27 71.24 0.38 -0.48 16 19 O -0.33 0.07 10.12 -92.48 -0.94 -0.87 16 20 C 0.13 -0.10 6.69 22.50 0.15 0.06 16 21 C -0.20 1.01 9.04 22.36 0.20 1.21 16 22 C -0.08 0.36 8.66 22.25 0.19 0.55 16 23 C -0.16 0.27 5.35 -19.85 -0.11 0.17 16 24 C -0.07 0.12 2.80 71.23 0.20 0.32 16 25 O -0.56 0.34 12.83 -148.98 -1.91 -1.58 16 26 Si 0.78 -2.99 29.80 68.60 2.04 -0.95 16 27 C -0.06 -0.02 9.68 22.25 0.22 0.20 16 28 C -0.16 -0.14 9.99 22.36 0.22 0.08 16 29 O -0.16 -0.20 10.40 -5.00 -0.05 -0.25 16 30 C -0.13 0.35 7.43 31.13 0.23 0.58 16 31 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 32 H 0.06 -0.05 8.13 -2.38 -0.02 -0.07 16 33 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.10 -0.11 7.44 -2.39 -0.02 -0.13 16 35 H 0.10 -0.66 8.14 -2.39 -0.02 -0.67 16 36 H 0.42 -2.52 8.46 -92.71 -0.78 -3.30 16 37 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.07 0.42 6.45 -2.39 -0.02 0.41 16 39 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.18 -0.96 8.06 -2.91 -0.02 -0.99 16 41 H 0.13 -1.48 7.68 -2.39 -0.02 -1.50 16 42 H 0.11 -1.10 7.65 -2.39 -0.02 -1.12 16 43 H 0.16 -1.82 6.30 -2.91 -0.02 -1.84 16 44 H 0.15 -1.45 4.90 -2.91 -0.01 -1.47 16 45 H 0.10 -0.01 7.96 -2.39 -0.02 -0.03 16 46 H 0.39 -3.48 8.70 -74.06 -0.64 -4.12 16 47 H -0.28 -0.12 7.11 99.48 0.71 0.58 16 48 H -0.30 -1.38 7.11 99.48 0.71 -0.67 16 49 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 50 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 51 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 52 H 0.10 -0.22 8.10 -2.39 -0.02 -0.24 16 Total: 0.00 -25.28 440.70 1.77 -23.51 By element: Atomic # 1 Polarization: -17.08 SS G_CDS: -0.40 Total: -17.48 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.62 Total: 10.66 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -2.33 Total: -1.17 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -3.16 Total: -14.58 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.04 Total: -0.95 kcal Total: -25.28 1.77 -23.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_4549632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.553 kcal (2) G-P(sol) polarization free energy of solvation -25.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds