Wall clock time and date at job start Tue Mar 9 2021 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99927 * 2 1 4 4 O 1.20820 * 119.99791 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99882 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.85178 * 309.66385 * 5 3 2 7 7 C 1.53785 * 113.69000 * 80.93543 * 5 3 2 8 8 C 1.53779 * 87.08093 * 139.98979 * 7 5 3 9 9 H 1.08994 * 113.61314 * 220.01752 * 8 7 5 10 10 N 1.46504 * 113.61484 * 89.11287 * 8 7 5 11 11 C 1.34781 * 119.99665 * 107.49929 * 10 8 7 12 12 O 1.21280 * 119.99730 * 0.02562 * 11 10 8 13 13 C 1.50696 * 119.99783 * 179.97438 * 11 10 8 14 14 O 1.42897 * 109.46960 * 180.02562 * 13 11 10 15 15 C 1.35901 * 117.00061 * 179.97438 * 14 13 11 16 16 C 1.38751 * 120.03022 * 179.72071 * 15 14 13 17 17 C 1.50698 * 119.97024 * 0.03249 * 16 15 14 18 18 O 1.42903 * 109.46996 * 284.99133 * 17 16 15 19 19 Si 1.86301 * 109.47141 * 164.99801 * 17 16 15 20 20 C 1.38194 * 120.05619 * 179.76792 * 16 15 14 21 21 C 1.38156 * 120.10718 * 0.51235 * 20 16 15 22 22 C 1.38794 * 120.05539 * 359.74623 * 21 20 16 23 23 O 1.35899 * 120.02764 * 179.97438 * 22 21 20 24 24 C 1.42902 * 116.99732 * 0.02562 * 23 22 21 25 25 C 1.38611 * 119.94575 * 359.97438 * 22 21 20 26 26 C 1.53781 * 113.61206 * 178.47078 * 5 3 2 27 27 H 1.09003 * 109.47339 * 60.00475 * 1 2 3 28 28 H 1.09003 * 109.47128 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47909 * 300.00335 * 1 2 3 30 30 H 1.09003 * 113.60734 * 254.54099 * 7 5 3 31 31 H 1.08996 * 113.61146 * 25.43597 * 7 5 3 32 32 H 0.96996 * 119.99953 * 287.50554 * 10 8 7 33 33 H 1.09003 * 109.47145 * 300.00264 * 13 11 10 34 34 H 1.09007 * 109.47317 * 60.00401 * 13 11 10 35 35 H 1.08998 * 109.47639 * 44.99391 * 17 16 15 36 36 H 0.96698 * 114.00287 * 300.00879 * 18 17 16 37 37 H 1.48498 * 110.00008 * 58.67487 * 19 17 16 38 38 H 1.48501 * 109.99992 * 179.97438 * 19 17 16 39 39 H 1.08005 * 119.94932 * 180.25873 * 20 16 15 40 40 H 1.08008 * 119.97368 * 179.72020 * 21 20 16 41 41 H 1.09002 * 109.46809 * 179.97438 * 24 23 22 42 42 H 1.08991 * 109.47519 * 299.99433 * 24 23 22 43 43 H 1.08999 * 109.46995 * 60.00412 * 24 23 22 44 44 H 1.07997 * 120.05644 * 179.97438 * 25 22 21 45 45 H 1.09005 * 113.61302 * 334.48043 * 26 5 3 46 46 H 1.08996 * 113.61527 * 105.30207 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0223 0.6569 0.7741 7 6 4.1955 1.0854 -1.3898 8 6 5.1841 2.1995 -1.0076 9 1 5.4017 2.8889 -1.8234 10 7 6.3914 1.7088 -0.3384 11 6 7.5698 1.7040 -0.9926 12 8 7.6307 2.1064 -2.1350 13 6 8.8118 1.1997 -0.3040 14 8 9.9235 1.2956 -1.1966 15 6 11.1291 0.8790 -0.7276 16 6 12.2499 0.9388 -1.5433 17 6 12.1301 1.4668 -2.9497 18 8 11.5023 0.4839 -3.7755 19 14 13.8275 1.8463 -3.6172 20 6 13.4770 0.5198 -1.0653 21 6 13.5890 0.0305 0.2218 22 6 12.4698 -0.0364 1.0399 23 8 12.5805 -0.5182 2.3058 24 6 13.8794 -0.9378 2.7289 25 6 11.2390 0.3887 0.5648 26 6 4.1077 2.7137 -0.0371 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 4.6663 0.1119 -1.5269 31 1 3.5303 1.3543 -2.2103 32 1 6.3426 1.3872 0.5754 33 1 9.0055 1.8025 0.5832 34 1 8.6684 0.1592 -0.0121 35 1 11.5292 2.3762 -2.9465 36 1 11.9832 -0.3535 -3.8251 37 1 14.6667 0.6213 -3.5971 38 1 13.7231 2.3672 -5.0040 39 1 14.3491 0.5711 -1.7004 40 1 14.5482 -0.3006 0.5917 41 1 13.8278 -1.2992 3.7559 42 1 14.2323 -1.7384 2.0790 43 1 14.5688 -0.0952 2.6749 44 1 10.3669 0.3371 1.1997 45 1 3.4186 3.4279 -0.4880 46 1 4.5064 3.0554 0.9181 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_4974312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:40 Heat of formation + Delta-G solvation = -158.367845 kcal Electronic energy + Delta-G solvation = -30675.090069 eV Core-core repulsion = 26113.075384 eV Total energy + Delta-G solvation = -4562.014684 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11189 -41.76035 -40.95306 -40.00866 -39.15252 -38.28461 -37.46926 -36.98690 -34.53769 -32.29122 -31.43761 -29.92288 -29.05549 -28.33894 -26.87953 -26.78529 -26.11703 -23.88088 -22.59020 -22.47916 -21.92423 -20.48807 -19.94809 -19.03642 -18.52549 -18.15899 -17.92652 -17.68675 -17.49023 -17.41657 -17.21497 -16.80968 -16.65358 -16.47272 -16.04049 -15.84809 -15.52854 -15.18799 -15.15133 -15.00206 -14.62901 -14.48660 -14.28418 -13.81928 -13.71436 -13.52761 -13.41532 -13.32185 -13.19508 -13.09564 -12.88076 -12.45921 -12.29256 -12.01889 -11.89924 -11.85289 -11.78405 -11.64205 -11.61875 -11.41217 -11.06128 -10.50231 -10.25133 -9.68390 -9.08918 -4.92028 0.21686 0.32359 1.04648 1.32923 1.39884 1.39984 1.56542 1.71263 1.97363 2.25726 2.55103 2.58776 3.20017 3.29501 3.48951 3.51218 3.64506 3.73794 3.74669 3.81973 3.97381 4.04551 4.07398 4.08300 4.18851 4.24202 4.26678 4.36139 4.41930 4.43733 4.45987 4.48483 4.60833 4.66021 4.67564 4.68605 4.77939 4.80432 4.86617 4.96695 5.03687 5.25199 5.29424 5.32779 5.41377 5.48950 6.14209 6.36214 6.43356 6.58668 6.63235 7.09387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.104 4.104 6 H 0.157 0.843 7 C -0.130 4.130 8 C 0.123 3.877 9 H 0.093 0.907 10 N -0.691 5.691 11 C 0.519 3.481 12 O -0.565 6.565 13 C 0.034 3.966 14 O -0.303 6.303 15 C 0.178 3.822 16 C -0.196 4.196 17 C -0.077 4.077 18 O -0.549 6.549 19 Si 0.779 3.221 20 C -0.042 4.042 21 C -0.238 4.238 22 C 0.164 3.836 23 O -0.329 6.329 24 C 0.016 3.984 25 C -0.251 4.251 26 C -0.115 4.115 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.381 0.619 37 H -0.263 1.263 38 H -0.309 1.309 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.098 0.902 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -3.713 8.651 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.312 3.688 4 O -0.428 6.428 5 C -0.122 4.122 6 H 0.174 0.826 7 C -0.169 4.169 8 C 0.017 3.983 9 H 0.111 0.889 10 N -0.346 5.346 11 C 0.305 3.695 12 O -0.443 6.443 13 C -0.044 4.044 14 O -0.215 6.215 15 C 0.132 3.868 16 C -0.197 4.197 17 C -0.184 4.184 18 O -0.357 6.357 19 Si 0.683 3.317 20 C -0.059 4.059 21 C -0.257 4.257 22 C 0.118 3.882 23 O -0.243 6.243 24 C -0.078 4.078 25 C -0.270 4.270 26 C -0.153 4.153 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.262 0.738 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.230 0.770 37 H -0.189 1.189 38 H -0.238 1.238 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.173 0.827 45 H 0.116 0.884 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.691 -2.796 7.141 8.511 hybrid contribution -1.052 -1.191 0.042 1.589 sum 2.639 -3.987 7.183 8.629 Atomic orbital electron populations 1.23517 0.75160 1.05566 1.02410 1.86521 1.24680 1.33269 1.83489 1.24162 0.92762 0.80961 0.70935 1.90675 1.67965 1.37473 1.46715 1.22805 0.85636 1.01514 1.02286 0.82557 1.23370 0.97509 1.01129 0.94900 1.21690 0.83600 0.96348 0.96614 0.88913 1.45288 1.05882 1.65249 1.18160 1.20474 0.85128 0.77711 0.86191 1.90793 1.86265 1.47396 1.19798 1.22753 0.83304 1.05146 0.93152 1.86220 1.14731 1.79584 1.41010 1.18559 0.84714 0.92263 0.91282 1.19593 0.92246 1.10468 0.97373 1.25130 1.11088 0.93615 0.88591 1.86651 1.52467 1.27167 1.69392 0.94135 0.73691 0.83952 0.79909 1.20936 0.95913 0.93593 0.95475 1.21395 0.99298 1.09566 0.95431 1.18878 0.93667 0.91504 0.84155 1.86055 1.34726 1.76812 1.26663 1.23394 0.81809 1.00424 1.02157 1.20564 0.98673 1.11689 0.96059 1.23280 0.95956 0.94523 1.01567 0.92254 0.85414 0.91912 0.88928 0.89089 0.73787 0.85531 0.85956 0.88377 0.77026 1.18911 1.23767 0.82813 0.82629 0.86572 0.91522 0.91148 0.82676 0.88397 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.80 10.57 -51.44 -0.54 -1.34 16 3 C 0.47 1.35 7.49 71.24 0.53 1.88 16 4 O -0.54 -5.11 15.66 21.98 0.34 -4.77 16 5 C -0.10 0.46 4.13 -11.01 -0.05 0.42 16 6 H 0.16 -1.67 8.14 -2.39 -0.02 -1.69 16 7 C -0.13 0.36 7.43 31.12 0.23 0.59 16 8 C 0.12 -0.27 4.32 45.52 0.20 -0.07 16 9 H 0.09 0.30 7.47 -2.39 -0.02 0.28 16 10 N -0.69 3.55 5.26 -440.03 -2.32 1.23 16 11 C 0.52 1.39 7.91 87.66 0.69 2.08 16 12 O -0.57 -8.39 16.10 16.01 0.26 -8.13 16 13 C 0.03 -0.08 5.22 71.23 0.37 0.30 16 14 O -0.30 -2.12 8.99 -73.40 -0.66 -2.78 16 15 C 0.18 0.79 6.66 22.49 0.15 0.94 16 16 C -0.20 -0.71 5.28 -19.75 -0.10 -0.81 16 17 C -0.08 -0.43 2.37 71.24 0.17 -0.26 16 18 O -0.55 -5.21 12.88 -148.98 -1.92 -7.13 16 19 Si 0.78 0.38 30.23 68.60 2.07 2.46 16 20 C -0.04 0.03 8.65 22.24 0.19 0.22 16 21 C -0.24 0.38 9.04 22.38 0.20 0.59 16 22 C 0.16 0.12 6.68 22.49 0.15 0.27 16 23 O -0.33 0.06 10.49 -92.41 -0.97 -0.91 16 24 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 25 C -0.25 -0.22 8.97 22.46 0.20 -0.02 16 26 C -0.12 0.50 7.14 31.12 0.22 0.72 16 27 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 28 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 30 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.09 -0.07 8.10 -2.39 -0.02 -0.09 16 32 H 0.42 -5.59 8.70 -92.71 -0.81 -6.40 16 33 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 34 H 0.12 -0.96 7.66 -2.38 -0.02 -0.98 16 35 H 0.10 0.84 7.82 -2.39 -0.02 0.83 16 36 H 0.38 0.77 8.70 -74.06 -0.64 0.13 16 37 H -0.26 -0.21 6.69 99.48 0.67 0.45 16 38 H -0.31 -2.81 7.11 99.48 0.71 -2.10 16 39 H 0.15 -0.72 4.85 -2.91 -0.01 -0.74 16 40 H 0.16 -1.03 6.29 -2.91 -0.02 -1.05 16 41 H 0.12 -1.16 8.14 -2.39 -0.02 -1.17 16 42 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 43 H 0.07 -0.64 7.66 -2.39 -0.02 -0.65 16 44 H 0.16 -0.62 6.30 -2.91 -0.02 -0.63 16 45 H 0.10 -0.04 7.46 -2.38 -0.02 -0.06 16 46 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 Total: 0.00 -31.46 388.94 1.33 -30.13 By element: Atomic # 1 Polarization: -17.34 SS G_CDS: -0.41 Total: -17.75 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.47 Total: 9.00 kcal Atomic # 7 Polarization: 3.55 SS G_CDS: -2.32 Total: 1.23 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -3.49 Total: -25.06 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.07 Total: 2.46 kcal Total: -31.46 1.33 -30.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_4974312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.241 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds