Wall clock time and date at job start Tue Mar 9 2021 12:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 116.99519 * 2 1 4 4 O 1.20824 * 120.00465 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00121 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84873 * 48.79971 * 5 3 2 7 7 C 1.53779 * 113.61537 * 180.02562 * 5 3 2 8 8 C 1.53782 * 87.08038 * 140.06402 * 7 5 3 9 9 H 1.09002 * 113.61052 * 219.93461 * 8 7 5 10 10 N 1.46498 * 113.61542 * 89.11161 * 8 7 5 11 11 C 1.34777 * 119.99828 * 154.72141 * 10 8 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 8 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 8 14 14 N 1.46492 * 109.47441 * 180.02562 * 13 11 10 15 15 C 1.36833 * 125.06064 * 265.02531 * 14 13 11 16 16 C 1.34243 * 109.93554 * 179.97438 * 15 14 13 17 17 C 1.50702 * 126.49799 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47377 * 104.97358 * 17 16 15 19 19 Si 1.86300 * 109.47160 * 344.97034 * 17 16 15 20 20 C 1.46489 * 107.00198 * 0.02562 * 16 15 14 21 21 C 1.39588 * 134.04086 * 180.02562 * 20 16 15 22 22 C 1.36658 * 119.76390 * 179.97438 * 21 20 16 23 23 C 1.38793 * 120.53316 * 359.97438 * 22 21 20 24 24 C 1.37786 * 120.66009 * 0.02562 * 23 22 21 25 25 C 1.37690 * 125.06175 * 84.71985 * 14 13 11 26 26 C 1.53778 * 87.08166 * 334.56503 * 8 7 5 27 27 H 1.08995 * 109.47708 * 300.00017 * 1 2 3 28 28 H 1.08999 * 109.47431 * 60.00564 * 1 2 3 29 29 H 1.09008 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.08999 * 113.61533 * 25.51109 * 7 5 3 31 31 H 1.08997 * 113.61163 * 254.61221 * 7 5 3 32 32 H 0.97001 * 120.00384 * 335.00588 * 10 8 7 33 33 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 34 34 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 35 35 H 1.07995 * 125.03767 * 359.96318 * 15 14 13 36 36 H 1.09002 * 109.46546 * 224.97760 * 17 16 15 37 37 H 0.96696 * 113.99951 * 179.97438 * 18 17 16 38 38 H 1.48499 * 109.99705 * 60.00474 * 19 17 16 39 39 H 1.48499 * 110.00003 * 181.32031 * 19 17 16 40 40 H 1.08002 * 120.11794 * 359.97438 * 21 20 16 41 41 H 1.08003 * 119.73485 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.66823 * 179.97438 * 23 22 21 43 43 H 1.08006 * 120.10995 * 179.97438 * 24 23 22 44 44 H 1.08998 * 113.61637 * 139.97959 * 26 8 7 45 45 H 1.08999 * 113.61924 * 270.88614 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2751 -0.0006 6 1 4.0233 0.6367 -0.7567 7 6 4.1075 2.7144 0.0001 8 6 5.1826 2.2260 0.9852 9 1 5.4000 2.9372 1.7821 10 7 6.3908 1.7178 0.3309 11 6 7.5693 1.7355 0.9845 12 8 7.6287 2.1674 2.1163 13 6 8.8134 1.2185 0.3091 14 7 9.9527 1.3449 1.2213 15 6 10.8294 2.3953 1.2432 16 6 11.7539 2.2001 2.1967 17 6 12.8940 3.1232 2.5422 18 8 12.5994 3.8086 3.7610 19 14 13.1254 4.3642 1.1721 20 6 11.4445 0.9198 2.8377 21 6 12.0267 0.1874 3.8736 22 6 11.4822 -1.0088 4.2481 23 6 10.3542 -1.5016 3.6070 24 6 9.7636 -0.7951 2.5821 25 6 10.2973 0.4273 2.1883 26 6 4.1935 1.1222 1.3952 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.4178 3.4401 0.4310 31 1 4.5088 3.0304 -0.9628 32 1 6.3434 1.3724 -0.5743 33 1 8.6745 0.1702 0.0449 34 1 9.0044 1.7985 -0.5938 35 1 10.7844 3.2541 0.5899 36 1 13.8079 2.5418 2.6640 37 1 13.2917 4.4210 4.0451 38 1 11.8861 5.1632 0.9961 39 1 14.2671 5.2603 1.4860 40 1 12.9043 0.5648 4.3774 41 1 11.9333 -1.5752 5.0495 42 1 9.9358 -2.4487 3.9140 43 1 8.8862 -1.1872 2.0890 44 1 4.6642 0.1527 1.5585 45 1 3.5272 1.4125 2.2075 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:08 Heat of formation + Delta-G solvation = -47.318272 kcal Electronic energy + Delta-G solvation = -29582.807479 eV Core-core repulsion = 25341.094458 eV Total energy + Delta-G solvation = -4241.713021 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53156 -42.02778 -40.84417 -39.23579 -38.07325 -37.70188 -37.46385 -34.61127 -34.01430 -31.43718 -30.26682 -29.64094 -28.86653 -26.96397 -26.87476 -25.61966 -23.79113 -22.97703 -22.43854 -21.80148 -20.55542 -20.43003 -19.11595 -18.51133 -18.38291 -18.12680 -17.79589 -17.66631 -17.43098 -16.84990 -16.41981 -16.33383 -15.84390 -15.77410 -15.23374 -15.13400 -14.87455 -14.76371 -14.71141 -14.39962 -14.31074 -14.11035 -13.81853 -13.52624 -13.51883 -13.24133 -13.13167 -12.88830 -12.70950 -12.55248 -12.50177 -12.08882 -11.90908 -11.86090 -11.79127 -11.70231 -11.42472 -11.18020 -10.52929 -10.33868 -10.23198 -9.13621 -8.61339 -4.89972 0.15994 0.65934 1.03674 1.32552 1.39478 1.42829 1.62719 1.70395 1.74097 1.98829 2.13270 2.95692 3.19390 3.28877 3.54723 3.57792 3.64489 3.71629 3.75771 3.82276 3.87229 4.03685 4.04679 4.19003 4.23600 4.25123 4.26056 4.30297 4.42528 4.44964 4.59021 4.59321 4.64849 4.67611 4.73307 4.77526 4.81262 4.85093 4.92224 4.96582 5.16531 5.32168 5.42950 5.53376 5.68230 5.75112 5.77465 6.18992 6.25790 6.46518 6.62473 6.68262 7.12970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.101 4.101 6 H 0.160 0.840 7 C -0.117 4.117 8 C 0.124 3.876 9 H 0.085 0.915 10 N -0.691 5.691 11 C 0.493 3.507 12 O -0.573 6.573 13 C 0.088 3.912 14 N -0.466 5.466 15 C 0.074 3.926 16 C -0.183 4.183 17 C -0.059 4.059 18 O -0.565 6.565 19 Si 0.783 3.217 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.154 4.154 23 C -0.108 4.108 24 C -0.132 4.132 25 C 0.091 3.909 26 C -0.129 4.129 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.425 0.575 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.079 0.921 37 H 0.389 0.611 38 H -0.290 1.290 39 H -0.287 1.287 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.094 0.906 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -4.855 -8.963 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.430 6.430 5 C -0.120 4.120 6 H 0.177 0.823 7 C -0.155 4.155 8 C 0.017 3.983 9 H 0.104 0.896 10 N -0.345 5.345 11 C 0.279 3.721 12 O -0.451 6.451 13 C -0.036 4.036 14 N -0.149 5.149 15 C -0.052 4.052 16 C -0.190 4.190 17 C -0.166 4.166 18 O -0.375 6.375 19 Si 0.687 3.313 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.173 4.173 23 C -0.127 4.127 24 C -0.152 4.152 25 C -0.014 4.014 26 C -0.168 4.168 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.264 0.736 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.210 0.790 36 H 0.097 0.903 37 H 0.239 0.761 38 H -0.218 1.218 39 H -0.214 1.214 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.265 -3.810 -8.655 9.460 hybrid contribution -0.380 0.605 1.399 1.571 sum -0.645 -3.204 -7.256 7.958 Atomic orbital electron populations 1.23516 0.75184 1.05592 1.02363 1.86518 1.24650 1.33222 1.83468 1.24208 0.92855 0.80956 0.70911 1.90679 1.68023 1.37538 1.46761 1.22796 0.85526 1.01494 1.02183 0.82293 1.23275 0.96074 0.94579 1.01558 1.21629 0.84037 0.96163 0.96450 0.89644 1.45424 1.05950 1.63861 1.19289 1.21591 0.86055 0.78051 0.86398 1.90833 1.86363 1.47227 1.20637 1.22041 0.81034 1.07754 0.92764 1.43401 1.23989 1.17330 1.30152 1.21921 0.89998 0.92307 1.00932 1.19761 1.01785 0.96166 1.01277 1.24484 0.97050 1.00243 0.94840 1.86625 1.49338 1.60679 1.40832 0.94256 0.76688 0.77090 0.83315 1.19370 0.97516 0.96228 0.99165 1.20441 0.99921 0.94702 0.95630 1.20926 0.97903 0.96584 1.01878 1.21149 0.95793 1.00410 0.95318 1.20264 1.01748 0.92853 1.00357 1.18418 0.96655 0.93367 0.92923 1.23342 0.97506 1.01247 0.94714 0.92359 0.91918 0.85347 0.88857 0.87378 0.73634 0.83018 0.81473 0.78969 0.90342 0.76142 1.21752 1.21426 0.86244 0.84513 0.83556 0.84526 0.88732 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.55 113.37 1.20 1.15 16 2 O -0.36 -0.47 10.57 -51.40 -0.54 -1.01 16 3 C 0.47 0.96 7.49 71.24 0.53 1.49 16 4 O -0.54 -4.87 15.65 21.97 0.34 -4.53 16 5 C -0.10 0.59 4.13 -11.01 -0.05 0.54 16 6 H 0.16 -1.99 8.14 -2.39 -0.02 -2.01 16 7 C -0.12 0.62 7.15 31.12 0.22 0.85 16 8 C 0.12 -0.45 4.33 45.52 0.20 -0.25 16 9 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 10 N -0.69 5.69 5.26 -440.04 -2.32 3.37 16 11 C 0.49 -0.67 7.90 87.66 0.69 0.02 16 12 O -0.57 -6.85 16.02 -3.04 -0.05 -6.90 16 13 C 0.09 -0.70 6.48 85.64 0.55 -0.15 16 14 N -0.47 -1.08 2.27 -520.00 -1.18 -2.26 16 15 C 0.07 0.26 9.89 83.00 0.82 1.08 16 16 C -0.18 -1.44 5.61 -18.62 -0.10 -1.54 16 17 C -0.06 -0.25 3.05 71.24 0.22 -0.03 16 18 O -0.57 -4.79 12.86 -148.98 -1.92 -6.70 16 19 Si 0.78 -0.77 30.79 68.60 2.11 1.34 16 20 C -0.12 -1.29 6.35 -20.20 -0.13 -1.42 16 21 C -0.09 -0.86 10.05 22.23 0.22 -0.63 16 22 C -0.15 -1.00 9.97 22.03 0.22 -0.78 16 23 C -0.11 -0.49 10.01 22.30 0.22 -0.27 16 24 C -0.13 -0.63 9.99 22.37 0.22 -0.41 16 25 C 0.09 0.70 6.80 39.03 0.27 0.97 16 26 C -0.13 0.51 7.43 31.12 0.23 0.74 16 27 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 28 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 29 H 0.13 -0.94 8.14 -2.38 -0.02 -0.96 16 30 H 0.09 -0.06 7.44 -2.39 -0.02 -0.08 16 31 H 0.11 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.42 -7.09 8.70 -92.71 -0.81 -7.90 16 33 H 0.15 -2.16 8.14 -2.39 -0.02 -2.18 16 34 H 0.17 -2.77 8.12 -2.39 -0.02 -2.79 16 35 H 0.19 -0.54 6.30 -2.91 -0.02 -0.56 16 36 H 0.08 0.13 7.96 -2.39 -0.02 0.11 16 37 H 0.39 -0.18 8.74 -74.06 -0.65 -0.83 16 38 H -0.29 -1.37 7.04 99.48 0.70 -0.66 16 39 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 40 H 0.12 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.15 -0.12 8.06 -2.91 -0.02 -0.15 16 43 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 44 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.09 -0.10 8.10 -2.39 -0.02 -0.12 16 Total: 0.00 -35.69 386.77 1.61 -34.08 By element: Atomic # 1 Polarization: -18.37 SS G_CDS: -0.39 Total: -18.76 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.54 Total: 1.36 kcal Atomic # 7 Polarization: 4.61 SS G_CDS: -3.50 Total: 1.11 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -2.16 Total: -19.14 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.11 Total: 1.34 kcal Total: -35.69 1.61 -34.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.234 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds