Wall clock time and date at job start Tue Mar 9 2021 12:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99730 * 2 1 4 4 C 1.39156 * 120.07026 * 180.02562 * 3 2 1 5 5 O 1.35994 * 120.07474 * 359.97438 * 4 3 2 6 6 C 1.42900 * 116.99942 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99948 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99369 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99390 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.91246 * 23.74616 * 10 9 7 12 12 C 1.53786 * 113.61518 * 154.99856 * 10 9 7 13 13 C 1.53781 * 87.17350 * 89.15486 * 12 10 9 14 14 H 1.08997 * 113.61223 * 270.84552 * 13 12 10 15 15 O 1.42900 * 113.61371 * 140.02193 * 13 12 10 16 16 C 1.53782 * 87.08260 * 25.39213 * 13 12 10 17 17 C 1.38568 * 119.85033 * 180.25767 * 4 3 2 18 18 C 1.38240 * 119.99870 * 359.42146 * 17 4 3 19 19 C 1.38260 * 120.14515 * 0.59996 * 18 17 4 20 20 C 1.50702 * 119.92283 * 179.70060 * 19 18 17 21 21 O 1.42902 * 109.46816 * 244.97614 * 20 19 18 22 22 Si 1.86297 * 109.47264 * 4.97844 * 20 19 18 23 23 C 1.38233 * 120.14645 * 359.68151 * 19 18 17 24 24 H 1.08994 * 109.47395 * 59.99556 * 1 2 3 25 25 H 1.09006 * 109.46818 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46636 * 299.99174 * 1 2 3 27 27 H 1.09002 * 109.47129 * 60.00013 * 6 5 4 28 28 H 1.09002 * 109.46992 * 300.00118 * 6 5 4 29 29 H 0.97001 * 120.00492 * 359.97438 * 9 7 6 30 30 H 1.09002 * 113.61357 * 334.56403 * 12 10 9 31 31 H 1.09002 * 113.61608 * 203.74565 * 12 10 9 32 32 H 0.96705 * 114.00018 * 179.97438 * 15 13 12 33 33 H 1.08997 * 113.61668 * 89.11298 * 16 13 12 34 34 H 1.08994 * 113.61387 * 220.02033 * 16 13 12 35 35 H 1.07995 * 119.99745 * 179.72410 * 17 4 3 36 36 H 1.08003 * 119.92478 * 180.30341 * 18 17 4 37 37 H 1.09001 * 109.46980 * 124.98008 * 20 19 18 38 38 H 0.96703 * 114.00091 * 60.00700 * 21 20 19 39 39 H 1.48500 * 110.00049 * 180.02562 * 22 20 19 40 40 H 1.48497 * 110.00292 * 301.31663 * 22 20 19 41 41 H 1.08007 * 119.99955 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4360 1.2864 -0.0005 5 8 4.1796 0.1478 -0.0005 6 6 5.6004 0.3008 -0.0005 7 6 6.2519 -1.0581 0.0001 8 8 5.5670 -2.0590 0.0000 9 7 7.5958 -1.1610 0.0007 10 6 8.2292 -2.4819 0.0008 11 1 7.5842 -3.2618 -0.4040 12 6 9.6473 -2.4852 -0.5941 13 6 10.1604 -2.1824 0.8236 14 1 10.2181 -1.1175 1.0489 15 8 11.3568 -2.8868 1.1620 16 6 8.8794 -2.8540 1.3458 17 6 4.0603 2.5235 0.0049 18 6 3.3029 3.6799 -0.0013 19 6 1.9223 3.6057 -0.0004 20 6 1.1015 4.8696 -0.0003 21 8 0.3650 4.9591 1.2210 22 14 2.2307 6.3434 -0.1540 23 6 1.2932 2.3748 0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 5.9066 0.8506 0.8895 28 1 5.9065 0.8506 -0.8905 29 1 8.1436 -0.3604 0.0004 30 1 9.8247 -1.6776 -1.3044 31 1 9.9597 -3.4583 -0.9729 32 1 11.6847 -2.7001 2.0524 33 1 8.9805 -3.9286 1.4979 34 1 8.4368 -2.3442 2.2016 35 1 5.1385 2.5841 0.0090 36 1 3.7907 4.6435 -0.0020 37 1 0.4090 4.8531 -0.8419 38 1 0.9185 4.9784 2.0137 39 1 1.4334 7.5962 -0.1545 40 1 3.2005 6.3597 0.9704 41 1 0.2145 2.3196 0.0004 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_60476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:24 Heat of formation + Delta-G solvation = -126.365551 kcal Electronic energy + Delta-G solvation = -25261.351330 eV Core-core repulsion = 21303.170321 eV Total energy + Delta-G solvation = -3958.181009 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86414 -41.29766 -39.97280 -39.13178 -38.87299 -37.03242 -36.39376 -33.97844 -32.03103 -31.45944 -29.56423 -28.45636 -26.79859 -26.26098 -25.24212 -23.60040 -22.62029 -21.90876 -20.60758 -19.83552 -18.80546 -18.58675 -18.24176 -17.90454 -17.54470 -17.17859 -16.87276 -16.69808 -16.18127 -16.13331 -15.90215 -15.80713 -15.60066 -15.27206 -15.00258 -14.67445 -14.32810 -13.79945 -13.69152 -13.54447 -13.47771 -13.39471 -12.83291 -12.62917 -12.59077 -12.44568 -12.17976 -12.13912 -12.00234 -11.62542 -11.51076 -11.06712 -10.76909 -10.61102 -10.22208 -9.79185 -8.92803 -4.88050 0.16378 0.27553 1.33551 1.39289 1.42182 1.63300 1.99929 2.30540 2.52545 2.55044 3.27918 3.40950 3.43663 3.48626 3.62088 3.65845 3.80762 3.85252 3.89546 4.02619 4.04275 4.11146 4.13972 4.27818 4.30083 4.35518 4.54967 4.56979 4.64490 4.65599 4.71772 4.74299 4.91185 4.93139 5.00555 5.01882 5.12156 5.36875 5.44581 5.59125 5.95727 6.36770 6.49429 6.52795 6.88053 7.09559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.086 3.914 5 O -0.315 6.315 6 C 0.036 3.964 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.691 5.691 10 C 0.117 3.883 11 H 0.084 0.916 12 C -0.130 4.130 13 C 0.083 3.917 14 H 0.109 0.891 15 O -0.581 6.581 16 C -0.181 4.181 17 C -0.159 4.159 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.086 4.086 21 O -0.551 6.551 22 Si 0.778 3.222 23 C -0.152 4.152 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.423 0.577 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.396 0.604 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.386 0.614 39 H -0.308 1.308 40 H -0.273 1.273 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 6.470 -0.703 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.040 3.960 5 O -0.229 6.229 6 C -0.042 4.042 7 C 0.301 3.699 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.011 3.989 11 H 0.102 0.898 12 C -0.168 4.168 13 C 0.024 3.976 14 H 0.127 0.873 15 O -0.389 6.389 16 C -0.220 4.220 17 C -0.177 4.177 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.194 4.194 21 O -0.359 6.359 22 Si 0.682 3.318 23 C -0.170 4.170 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.262 0.738 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.246 0.754 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.194 0.806 36 H 0.175 0.825 37 H 0.139 0.861 38 H 0.235 0.765 39 H -0.237 1.237 40 H -0.199 1.199 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.111 5.843 -1.348 7.879 hybrid contribution -0.559 -0.090 1.805 1.891 sum 4.552 5.753 0.457 7.350 Atomic orbital electron populations 1.23283 0.76826 1.05182 1.02106 1.86193 1.22989 1.26664 1.89096 1.18688 0.89957 0.85613 1.02711 1.18589 0.88159 0.86515 1.02724 1.86221 1.18232 1.29133 1.89317 1.22775 0.79347 0.94778 1.07288 1.20640 0.82855 0.91011 0.75387 1.90781 1.64083 1.40306 1.49818 1.45306 1.05171 1.09322 1.74760 1.21610 0.93858 0.85608 0.97816 0.89783 1.23411 0.92034 1.04666 0.96717 1.23511 0.82542 0.96077 0.95491 0.87337 1.86495 1.42803 1.70577 1.39033 1.24168 0.97763 1.02465 0.97639 1.21383 1.02297 0.89254 1.04798 1.21050 0.92431 0.99125 1.00260 1.20116 0.94450 0.94678 1.02356 1.25321 1.02240 1.02280 0.89535 1.86574 1.37395 1.95597 1.16319 0.93962 0.77296 0.72313 0.88203 1.21020 1.00504 0.90549 1.04966 0.91529 0.87149 0.91966 0.85362 0.85011 0.73811 0.88274 0.88660 0.75374 0.89353 0.90718 0.80584 0.82478 0.86085 0.76453 1.23666 1.19894 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.34 -3.69 10.28 -79.67 -0.82 -4.51 16 3 C 0.08 0.58 6.70 22.57 0.15 0.74 16 4 C 0.09 0.42 6.70 22.57 0.15 0.58 16 5 O -0.32 -2.53 9.45 -67.06 -0.63 -3.16 16 6 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 7 C 0.51 1.63 7.91 87.66 0.69 2.32 16 8 O -0.57 -9.25 16.10 16.02 0.26 -9.00 16 9 N -0.69 3.11 5.27 -439.74 -2.32 0.80 16 10 C 0.12 -0.10 4.33 45.58 0.20 0.10 16 11 H 0.08 0.44 7.47 -2.39 -0.02 0.42 16 12 C -0.13 0.52 7.65 31.12 0.24 0.76 16 13 C 0.08 -0.42 5.09 31.12 0.16 -0.26 16 14 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 15 O -0.58 0.87 13.67 -148.98 -2.04 -1.17 16 16 C -0.18 0.33 7.72 31.18 0.24 0.57 16 17 C -0.16 0.53 9.04 22.35 0.20 0.73 16 18 C -0.11 0.43 8.66 22.28 0.19 0.62 16 19 C -0.12 0.05 5.35 -19.86 -0.11 -0.06 16 20 C -0.09 0.15 2.80 71.24 0.20 0.35 16 21 O -0.55 -1.00 12.83 -148.98 -1.91 -2.91 16 22 Si 0.78 -3.47 29.88 68.60 2.05 -1.42 16 23 C -0.15 -0.52 8.67 22.35 0.19 -0.32 16 24 H 0.07 -0.02 7.66 -2.39 -0.02 -0.04 16 25 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 26 H 0.06 0.03 7.66 -2.38 -0.02 0.01 16 27 H 0.13 -1.36 7.65 -2.39 -0.02 -1.38 16 28 H 0.13 -1.44 7.67 -2.39 -0.02 -1.46 16 29 H 0.42 -5.55 8.70 -92.71 -0.81 -6.36 16 30 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.40 -3.70 9.12 -74.05 -0.68 -4.38 16 33 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.18 -2.09 6.30 -2.91 -0.02 -2.10 16 36 H 0.16 -1.44 4.83 -2.91 -0.01 -1.46 16 37 H 0.12 -0.34 7.96 -2.39 -0.02 -0.36 16 38 H 0.39 -1.50 8.70 -74.06 -0.64 -2.14 16 39 H -0.31 -1.27 7.11 99.48 0.71 -0.56 16 40 H -0.27 0.60 7.01 99.48 0.70 1.30 16 41 H 0.14 0.28 6.30 -2.91 -0.02 0.27 16 Total: 0.00 -31.89 346.13 -2.41 -34.31 By element: Atomic # 1 Polarization: -19.47 SS G_CDS: -1.00 Total: -20.47 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.00 Total: 7.53 kcal Atomic # 7 Polarization: 3.11 SS G_CDS: -2.32 Total: 0.80 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -5.14 Total: -20.75 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.05 Total: -1.42 kcal Total: -31.89 -2.41 -34.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_60476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.058 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds