Wall clock time and date at job start Tue Mar 9 2021 13:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37867 * 126.45810 * 2 1 4 4 C 1.46673 * 126.23549 * 0.03614 * 3 2 1 5 5 O 1.21692 * 120.00137 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00339 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.38233 * 120.00099 * 269.72808 * 9 8 7 11 11 C 1.38239 * 119.99655 * 179.76882 * 10 9 8 12 12 C 1.38230 * 120.00228 * 0.50243 * 11 10 9 13 13 Si 1.86798 * 120.00102 * 179.72867 * 12 11 10 14 14 C 1.86301 * 109.46871 * 270.02233 * 13 12 11 15 15 C 1.86299 * 109.47339 * 30.02058 * 13 12 11 16 16 C 1.86299 * 109.47333 * 150.02442 * 13 12 11 17 17 C 1.38238 * 119.99995 * 359.75228 * 12 11 10 18 18 C 1.38238 * 120.00072 * 359.97438 * 17 12 11 19 19 N 1.37652 * 107.53562 * 180.30026 * 3 2 1 20 20 C 1.35537 * 108.64031 * 359.57107 * 19 3 2 21 21 C 1.50700 * 125.56264 * 180.13770 * 20 19 3 22 22 O 1.42903 * 109.47319 * 120.35043 * 21 20 19 23 23 Si 1.86298 * 109.47325 * 0.34575 * 21 20 19 24 24 H 1.48497 * 109.47006 * 60.00382 * 23 21 20 25 25 H 1.48494 * 109.47139 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47342 * 300.00473 * 23 21 20 27 27 C 1.35453 * 108.86996 * 0.43418 * 20 19 3 28 28 H 1.09004 * 109.47328 * 89.99836 * 1 2 3 29 29 H 1.09000 * 109.47337 * 209.99418 * 1 2 3 30 30 H 1.09003 * 109.47360 * 329.99716 * 1 2 3 31 31 H 0.97004 * 120.00228 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 33 33 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 34 34 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 35 35 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 36 36 H 1.08003 * 119.99927 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.99431 * 180.23215 * 11 10 9 38 38 H 1.09001 * 109.47306 * 59.99832 * 14 13 12 39 39 H 1.09000 * 109.47398 * 179.97438 * 14 13 12 40 40 H 1.08997 * 109.47535 * 300.00063 * 14 13 12 41 41 H 1.08996 * 109.46916 * 59.99852 * 15 13 12 42 42 H 1.08991 * 109.47456 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46932 * 300.00780 * 15 13 12 44 44 H 1.08997 * 109.46934 * 59.99468 * 16 13 12 45 45 H 1.08991 * 109.46995 * 179.97438 * 16 13 12 46 46 H 1.09000 * 109.46605 * 299.99518 * 16 13 12 47 47 H 1.08002 * 119.99952 * 179.97438 * 17 12 11 48 48 H 1.07991 * 120.00062 * 179.97438 * 18 17 12 49 49 H 0.96998 * 125.68129 * 179.69644 * 19 3 2 50 50 H 1.09010 * 109.46635 * 240.34913 * 21 20 19 51 51 H 0.96696 * 113.99328 * 299.99643 * 22 21 20 52 52 H 1.08000 * 126.06395 * 179.76763 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.1088 0.0000 4 6 1.8899 2.5092 0.0007 5 8 0.7027 2.7766 0.0019 6 7 2.8037 3.4998 0.0012 7 6 2.3679 4.8985 0.0025 8 6 3.5933 5.8146 0.0021 9 6 3.1450 7.2534 0.0028 10 6 2.9441 7.9153 -1.1940 11 6 2.5282 9.2337 -1.1932 12 6 2.3232 9.8931 0.0042 13 14 1.7686 11.6768 0.0051 14 6 3.2614 12.7913 0.0046 15 6 0.7447 12.0096 -1.5153 16 6 0.7465 12.0086 1.5270 17 6 2.5292 9.2327 1.2010 18 6 2.9397 7.9127 1.2004 19 7 3.6284 0.6625 -0.0069 20 6 3.6217 -0.6929 -0.0015 21 6 4.8433 -1.5753 -0.0031 22 8 4.8358 -2.4015 1.1629 23 14 6.3753 -0.5152 -0.0032 24 1 6.3848 0.3409 1.2101 25 1 7.5790 -1.3848 -0.0055 26 1 6.3831 0.3433 -1.2149 27 6 2.3379 -1.1247 -0.0009 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5139 31 1 3.7501 3.2868 0.0006 32 1 1.7696 5.0918 0.8929 33 1 1.7689 5.0932 -0.8870 34 1 4.1913 5.6212 -0.8885 35 1 4.1927 5.6199 0.8915 36 1 3.1089 7.4015 -2.1296 37 1 2.3676 9.7497 -2.1283 38 1 3.8595 12.5972 -0.8858 39 1 2.9379 13.8322 0.0047 40 1 3.8606 12.5967 0.8941 41 1 -0.1287 11.3576 -1.5150 42 1 0.4214 13.0505 -1.5150 43 1 1.3427 11.8155 -2.4056 44 1 1.3456 11.8139 2.4165 45 1 0.4233 13.0495 1.5277 46 1 -0.1270 11.3565 1.5272 47 1 2.3695 9.7481 2.1366 48 1 3.1010 7.3969 2.1353 49 1 4.4190 1.2243 -0.0126 50 1 4.8363 -2.2038 -0.8938 51 1 4.8414 -1.9081 1.9944 52 1 2.0136 -2.1548 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12221182_13940406.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:08 Heat of formation + Delta-G solvation = -58.608496 kcal Electronic energy + Delta-G solvation = -28586.465391 eV Core-core repulsion = 24674.108973 eV Total energy + Delta-G solvation = -3912.356419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60459 -40.46999 -39.89565 -37.82566 -36.58073 -34.00441 -33.38425 -31.86720 -31.49427 -29.77483 -29.18039 -28.45426 -28.42827 -28.27975 -26.79632 -24.52508 -23.47337 -22.40700 -21.90353 -21.60661 -20.32201 -19.75463 -18.01384 -17.52598 -16.94729 -16.93274 -16.81164 -16.58186 -15.94553 -15.88276 -15.63591 -15.07257 -15.05407 -14.55293 -14.38180 -14.31875 -14.19397 -14.16468 -14.13142 -13.89035 -13.85098 -13.76265 -13.47388 -13.37072 -13.33245 -13.27343 -13.11695 -12.97254 -12.86585 -12.74106 -12.62221 -12.58173 -12.46981 -12.18356 -11.88075 -11.04590 -10.97448 -10.91608 -10.80151 -10.66091 -10.24772 -9.78041 -9.77761 -9.57342 -9.13995 0.28178 0.34198 0.54399 0.81424 1.09901 1.13123 1.59552 1.64109 1.70978 1.83992 1.87693 1.92615 2.05243 2.38017 2.53961 2.90844 3.24635 3.56741 3.69292 3.75877 3.82842 3.95999 4.12776 4.13734 4.20805 4.32794 4.39012 4.43183 4.50973 4.59003 4.68761 4.69455 4.71937 4.73797 4.74542 4.75152 4.79747 4.83954 4.87677 4.95795 5.05144 5.05565 5.17007 5.20114 5.26638 5.41111 5.47423 5.49544 5.49679 5.52052 5.63450 5.65503 5.68921 5.94224 6.13469 6.17045 6.36813 6.39576 7.13266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.067 4.067 3 C -0.053 4.053 4 C 0.590 3.410 5 O -0.518 6.518 6 N -0.736 5.736 7 C 0.127 3.873 8 C -0.094 4.094 9 C -0.075 4.075 10 C -0.125 4.125 11 C -0.086 4.086 12 C -0.370 4.370 13 Si 1.059 2.941 14 C -0.449 4.449 15 C -0.450 4.450 16 C -0.450 4.450 17 C -0.086 4.086 18 C -0.125 4.125 19 N -0.542 5.542 20 C 0.012 3.988 21 C -0.050 4.050 22 O -0.529 6.529 23 Si 0.922 3.078 24 H -0.248 1.248 25 H -0.234 1.234 26 H -0.246 1.246 27 C -0.168 4.168 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.393 0.607 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.408 0.592 50 H 0.131 0.869 51 H 0.378 0.622 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 1.811 0.102 4.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.165 4.165 4 C 0.378 3.622 5 O -0.394 6.394 6 N -0.388 5.388 7 C 0.004 3.996 8 C -0.131 4.131 9 C -0.076 4.076 10 C -0.143 4.143 11 C -0.104 4.104 12 C -0.412 4.412 13 Si 1.251 2.749 14 C -0.556 4.556 15 C -0.557 4.557 16 C -0.557 4.557 17 C -0.104 4.104 18 C -0.143 4.143 19 N -0.142 5.142 20 C -0.103 4.103 21 C -0.162 4.162 22 O -0.334 6.334 23 Si 0.742 3.258 24 H -0.171 1.171 25 H -0.157 1.157 26 H -0.170 1.170 27 C -0.193 4.193 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.247 0.753 50 H 0.149 0.851 51 H 0.226 0.774 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.252 2.127 -0.341 4.767 hybrid contribution 0.669 0.151 0.335 0.764 sum 4.922 2.278 -0.006 5.423 Atomic orbital electron populations 1.20394 0.88860 1.03216 1.02547 1.20058 0.96111 0.90525 1.00898 1.20166 0.83272 0.93486 1.19608 1.17011 0.85835 0.82905 0.76460 1.90853 1.15838 1.83116 1.49581 1.45919 1.09251 1.06672 1.76977 1.21371 0.96460 0.78436 1.03377 1.20804 0.97240 0.91429 1.03655 1.19582 0.99760 0.94565 0.93658 1.21131 1.00579 0.95326 0.97255 1.21072 0.96977 0.94237 0.98114 1.27380 1.03765 1.15872 0.94179 0.78175 0.66892 0.62573 0.67295 1.26127 1.14897 1.10062 1.04557 1.26136 1.09463 1.05111 1.15036 1.26136 1.09444 1.05108 1.15056 1.21074 0.96998 0.94215 0.98119 1.21129 1.00600 0.95318 0.97245 1.42008 1.07131 1.06523 1.58583 1.20923 0.98026 0.82441 1.08957 1.24447 1.00431 0.98470 0.92887 1.86574 1.96772 1.34864 1.15144 0.86086 0.78571 0.79485 0.81634 1.17085 1.15652 1.16962 1.20640 0.90379 0.99159 1.09143 0.91214 0.91611 0.90061 0.77437 0.90783 0.90785 0.90240 0.90246 0.86346 0.86134 0.91218 0.91051 0.91215 0.91036 0.90970 0.91216 0.91216 0.90971 0.91036 0.86134 0.86352 0.75347 0.85105 0.77426 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.23 9.83 36.00 0.35 0.13 16 2 C -0.07 -0.18 6.21 -104.16 -0.65 -0.83 16 3 C -0.05 -0.11 7.06 -81.98 -0.58 -0.69 16 4 C 0.59 1.75 7.79 -12.86 -0.10 1.65 16 5 O -0.52 -3.31 14.80 5.20 0.08 -3.24 16 6 N -0.74 0.18 5.55 -61.62 -0.34 -0.16 16 7 C 0.13 -0.01 5.66 -4.04 -0.02 -0.03 16 8 C -0.09 0.17 5.46 -27.88 -0.15 0.02 16 9 C -0.08 -0.01 5.13 -104.62 -0.54 -0.55 16 10 C -0.12 -0.05 9.70 -39.58 -0.38 -0.43 16 11 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 12 C -0.37 0.07 4.59 -39.58 -0.18 -0.11 16 13 Si 1.06 -2.53 12.32 -169.99 -2.09 -4.63 16 14 C -0.45 0.65 8.65 101.05 0.87 1.53 16 15 C -0.45 0.71 8.53 101.05 0.86 1.58 16 16 C -0.45 0.72 8.53 101.05 0.86 1.58 16 17 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 18 C -0.12 -0.05 9.70 -39.58 -0.38 -0.43 16 19 N -0.54 0.31 5.47 -5.70 -0.03 0.28 16 20 C 0.01 0.00 6.12 -81.95 -0.50 -0.50 16 21 C -0.05 0.10 2.98 36.01 0.11 0.21 16 22 O -0.53 0.54 12.87 -35.23 -0.45 0.09 16 23 Si 0.92 -2.60 26.24 -169.99 -4.46 -7.06 16 24 H -0.25 0.72 7.11 56.52 0.40 1.12 16 25 H -0.23 0.28 7.11 56.52 0.40 0.69 16 26 H -0.25 0.64 7.11 56.52 0.40 1.04 16 27 C -0.17 -0.23 10.64 -39.98 -0.43 -0.66 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.08 0.32 6.48 -51.93 -0.34 -0.01 16 31 H 0.39 -1.22 7.60 -40.82 -0.31 -1.53 16 32 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 33 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.08 -0.22 8.08 -51.93 -0.42 -0.63 16 35 H 0.08 -0.22 8.09 -51.93 -0.42 -0.64 16 36 H 0.12 -0.11 8.06 -52.48 -0.42 -0.53 16 37 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 38 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 43 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 44 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 46 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 47 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 48 H 0.12 -0.11 8.06 -52.49 -0.42 -0.54 16 49 H 0.41 -1.29 5.98 -40.82 -0.24 -1.53 16 50 H 0.13 -0.37 7.96 -51.92 -0.41 -0.78 16 51 H 0.38 -1.53 8.70 45.56 0.40 -1.14 16 52 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 LS Contribution 429.34 15.07 6.47 6.47 Total: 0.00 -8.08 429.34 -10.40 -18.49 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: -7.98 Total: -11.91 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.59 Total: 1.67 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -0.37 Total: 0.12 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -0.38 Total: -3.15 kcal Atomic # 14 Polarization: -5.14 SS G_CDS: -6.56 Total: -11.69 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -8.08 -10.40 -18.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12221182_13940406.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.123 kcal (2) G-P(sol) polarization free energy of solvation -8.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds