Wall clock time and date at job start Tue Mar 9 2021 14:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47001 * 2 1 4 4 C 1.86299 * 109.46874 * 240.00203 * 2 1 3 5 5 C 1.86799 * 109.47028 * 120.00401 * 2 1 3 6 6 C 1.38234 * 120.00228 * 90.00161 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 N 1.46498 * 109.46762 * 179.97438 * 10 9 8 12 12 C 1.34784 * 119.99897 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99847 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99960 * 180.02562 * 12 11 10 15 15 O 1.42902 * 109.46879 * 179.97438 * 14 12 11 16 16 C 1.35920 * 116.99740 * 179.97438 * 15 14 12 17 17 C 1.38679 * 120.06195 * 359.73173 * 16 15 14 18 18 C 1.38181 * 119.95157 * 179.71876 * 17 16 15 19 19 C 1.38234 * 120.07845 * 0.52946 * 18 17 16 20 20 C 1.50693 * 119.94498 * 179.74513 * 19 18 17 21 21 O 1.42908 * 109.47184 * 120.02321 * 20 19 18 22 22 Si 1.86298 * 109.47326 * 0.02562 * 20 19 18 23 23 H 1.48497 * 109.47265 * 180.02562 * 22 20 19 24 24 H 1.48500 * 109.46770 * 300.00012 * 22 20 19 25 25 H 1.48498 * 109.47166 * 59.99939 * 22 20 19 26 26 C 1.38289 * 120.11342 * 359.76439 * 19 18 17 27 27 C 1.38194 * 120.04793 * 359.95949 * 26 19 18 28 28 Br 1.89100 * 120.03832 * 179.97438 * 27 26 19 29 29 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 30 30 C 1.38235 * 119.99567 * 270.01874 * 5 2 1 31 31 H 1.09001 * 109.47205 * 299.99925 * 1 2 3 32 32 H 1.08999 * 109.47227 * 59.99973 * 1 2 3 33 33 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46574 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47152 * 300.00073 * 3 2 1 36 36 H 1.09000 * 109.46711 * 60.00392 * 3 2 1 37 37 H 1.09007 * 109.47223 * 300.00044 * 4 2 1 38 38 H 1.08999 * 109.47337 * 59.99891 * 4 2 1 39 39 H 1.09000 * 109.47073 * 180.02562 * 4 2 1 40 40 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 41 41 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 42 42 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 43 43 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 44 44 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 45 45 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 46 46 H 0.97001 * 120.00666 * 359.97438 * 11 10 9 47 47 H 1.09003 * 109.46772 * 299.99441 * 14 12 11 48 48 H 1.08996 * 109.47586 * 59.99492 * 14 12 11 49 49 H 1.07998 * 120.01887 * 359.97438 * 17 16 15 50 50 H 1.08004 * 119.96408 * 180.27478 * 18 17 16 51 51 H 1.08999 * 109.47046 * 240.01823 * 20 19 18 52 52 H 0.96700 * 114.00135 * 180.02562 * 21 20 19 53 53 H 1.07997 * 119.97980 * 179.97438 * 26 19 18 54 54 H 1.08001 * 120.00279 * 180.02562 * 29 8 7 55 55 H 1.07997 * 120.00423 * 359.97438 * 30 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7161 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9021 -2.8958 5.0152 10 6 5.4321 -2.9030 5.0197 11 7 5.9136 -3.5943 6.2182 12 6 7.2375 -3.7229 6.4358 13 8 8.0301 -3.2668 5.6391 14 6 7.7328 -4.4345 7.6684 15 8 9.1618 -4.4411 7.6726 16 6 9.7729 -5.0481 8.7241 17 6 9.0132 -5.6203 9.7333 18 6 9.6368 -6.2419 10.7983 19 6 11.0169 -6.2844 10.8643 20 6 11.6938 -6.9580 12.0300 21 8 12.5068 -8.0322 11.5530 22 14 10.4036 -7.6262 13.1960 23 1 11.0707 -8.2895 14.3450 24 1 9.5588 -6.5100 13.6916 25 1 9.5528 -8.6112 12.4810 26 6 11.7774 -5.7095 9.8626 27 6 11.1589 -5.0915 8.7924 28 35 12.1992 -4.3048 7.4231 29 6 3.1773 -0.8214 3.8166 30 6 2.7157 -0.1698 2.6882 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.5740 1.7564 0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1207 2.2702 0.8900 37 1 2.1206 -1.9059 -1.5212 38 1 2.1206 -0.3644 -2.4111 39 1 3.5740 -0.8786 -1.5210 40 1 2.5358 -2.7987 0.5824 41 1 3.3560 -3.9596 2.5931 42 1 3.5386 -2.3794 5.9037 43 1 3.5339 -3.9217 5.0151 44 1 5.7956 -3.4193 4.1313 45 1 5.8002 -1.8770 5.0199 46 1 5.2797 -3.9588 6.8556 47 1 7.3689 -3.9183 8.5568 48 1 7.3651 -5.4606 7.6681 49 1 7.9349 -5.5837 9.6848 50 1 9.0452 -6.6914 11.5822 51 1 12.3184 -6.2351 12.5548 52 1 12.9735 -8.5121 12.2508 53 1 12.8555 -5.7436 9.9166 54 1 3.3576 -0.2659 4.7251 55 1 2.5358 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12221182_6201210.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:07:51 Heat of formation + Delta-G solvation = -91.855103 kcal Electronic energy + Delta-G solvation = -33168.901004 eV Core-core repulsion = 28533.802480 eV Total energy + Delta-G solvation = -4635.098524 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 465.093 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.69341 -40.73084 -40.02413 -39.04582 -37.28313 -36.54897 -33.81343 -33.59420 -32.03717 -31.79930 -30.76502 -30.21975 -29.45497 -28.47525 -28.31276 -28.28230 -26.29602 -24.65073 -23.77639 -23.41330 -22.30266 -22.00835 -21.43555 -19.62166 -18.60764 -18.33310 -17.62920 -17.59866 -17.18844 -16.93070 -16.63272 -16.57343 -15.89663 -15.85046 -15.78275 -15.71503 -15.11245 -14.76429 -14.64078 -14.45421 -14.25803 -14.19986 -14.13186 -14.01867 -13.99627 -13.86421 -13.72964 -13.69114 -13.52707 -13.19260 -13.13792 -12.98676 -12.79903 -12.64486 -12.58944 -12.50473 -12.30849 -12.18917 -11.93930 -11.83667 -11.78321 -11.77899 -11.21335 -11.10534 -10.89227 -10.77360 -10.71625 -10.31726 -10.27085 -9.98069 -9.74319 -9.50782 -9.31610 -0.09206 0.10637 0.34099 0.58026 0.61655 1.19854 1.39104 1.41814 1.49387 1.55993 1.86516 1.94017 2.01200 2.10148 2.35527 2.48611 2.67126 2.96864 3.38304 3.46136 3.64344 3.73481 3.89226 3.91467 3.97719 4.00416 4.01901 4.04734 4.07916 4.20975 4.22092 4.30638 4.51540 4.54114 4.60389 4.63223 4.64870 4.81991 4.82027 4.82730 4.84914 4.87065 4.87456 4.89219 4.93950 4.94602 4.94912 5.14542 5.22147 5.24372 5.25851 5.45545 5.50959 5.58120 5.61502 5.65901 5.70525 5.71995 6.02816 6.21355 6.41394 6.83431 7.09853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.119 2.881 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.385 4.385 6 C -0.103 4.103 7 C -0.140 4.140 8 C -0.087 4.087 9 C -0.080 4.080 10 C 0.131 3.869 11 N -0.708 5.708 12 C 0.510 3.490 13 O -0.571 6.571 14 C 0.033 3.967 15 O -0.305 6.305 16 C 0.147 3.853 17 C -0.189 4.189 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.084 4.084 21 O -0.565 6.565 22 Si 0.980 3.020 23 H -0.258 1.258 24 H -0.248 1.248 25 H -0.263 1.263 26 C -0.031 4.031 27 C -0.143 4.143 28 Br -0.051 7.051 29 C -0.140 4.140 30 C -0.103 4.103 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.423 0.577 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.179 0.821 50 H 0.151 0.849 51 H 0.095 0.905 52 H 0.399 0.601 53 H 0.144 0.856 54 H 0.129 0.871 55 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -2.091 6.339 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.307 2.693 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.425 4.425 6 C -0.121 4.121 7 C -0.158 4.158 8 C -0.088 4.088 9 C -0.117 4.117 10 C 0.007 3.993 11 N -0.363 5.363 12 C 0.296 3.704 13 O -0.449 6.449 14 C -0.044 4.044 15 O -0.217 6.217 16 C 0.099 3.901 17 C -0.208 4.208 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.193 4.193 21 O -0.374 6.374 22 Si 0.803 3.197 23 H -0.183 1.183 24 H -0.172 1.172 25 H -0.188 1.188 26 C -0.051 4.051 27 C -0.223 4.223 28 Br 0.034 6.966 29 C -0.158 4.158 30 C -0.121 4.121 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.262 0.738 47 H 0.151 0.849 48 H 0.149 0.851 49 H 0.196 0.804 50 H 0.168 0.832 51 H 0.113 0.887 52 H 0.249 0.751 53 H 0.161 0.839 54 H 0.147 0.853 55 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.239 -1.518 5.135 9.004 hybrid contribution 0.385 -0.332 0.610 0.795 sum -6.853 -1.850 5.745 9.132 Atomic orbital electron populations 1.26249 1.21348 1.04459 1.04549 0.77246 0.65434 0.64628 0.61975 1.26283 1.06243 1.19571 1.04819 1.26288 1.06240 1.08500 1.15909 1.27851 1.03895 0.99693 1.11081 1.21364 0.97247 0.95157 0.98324 1.21396 1.00575 1.00463 0.93372 1.19862 0.99351 0.94135 0.95433 1.20727 0.92323 1.02341 0.96338 1.21233 0.94268 0.96716 0.87036 1.45640 1.05951 1.58767 1.25984 1.20545 0.82947 0.79696 0.87189 1.90796 1.56268 1.49469 1.48366 1.22853 0.79342 1.04280 0.97975 1.86247 1.21203 1.72632 1.41631 1.18772 0.90728 0.92899 0.87720 1.21492 1.02006 1.03044 0.94275 1.21214 0.93622 0.96209 0.97837 1.19501 0.93557 1.01286 0.97386 1.24838 1.02393 0.92577 0.99528 1.86468 1.64957 1.46948 1.39041 0.85272 0.77676 0.80155 0.76617 1.18254 1.17165 1.18754 1.20905 1.01006 0.92813 0.90392 1.21297 0.91930 1.10214 0.98898 1.96751 1.69090 1.81616 1.49107 1.21400 1.00547 0.94379 0.99449 1.21370 0.97230 1.00486 0.92997 0.91351 0.90727 0.91364 0.91570 0.90700 0.90924 0.90944 0.90701 0.91576 0.84977 0.85390 0.88478 0.88524 0.92804 0.92762 0.73844 0.84921 0.85127 0.80379 0.83208 0.88728 0.75089 0.83858 0.85340 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.36 8.65 113.37 0.98 2.35 16 2 Si 1.12 -5.00 12.32 68.60 0.85 -4.16 16 3 C -0.46 1.31 8.53 113.37 0.97 2.27 16 4 C -0.46 1.28 8.53 113.37 0.97 2.25 16 5 C -0.39 -0.08 4.59 22.27 0.10 0.03 16 6 C -0.10 -0.11 9.29 22.27 0.21 0.10 16 7 C -0.14 -0.16 9.70 22.27 0.22 0.06 16 8 C -0.09 -0.02 5.13 -19.87 -0.10 -0.13 16 9 C -0.08 0.42 5.46 29.85 0.16 0.58 16 10 C 0.13 -0.08 5.66 86.38 0.49 0.41 16 11 N -0.71 2.94 5.56 -463.07 -2.57 0.37 16 12 C 0.51 1.66 7.91 87.65 0.69 2.35 16 13 O -0.57 -9.15 16.50 15.99 0.26 -8.89 16 14 C 0.03 -0.12 5.22 71.23 0.37 0.26 16 15 O -0.30 -2.00 9.01 -73.61 -0.66 -2.66 16 16 C 0.15 0.68 6.68 22.52 0.15 0.83 16 17 C -0.19 0.43 9.04 22.36 0.20 0.63 16 18 C -0.07 0.11 8.66 22.26 0.19 0.31 16 19 C -0.12 -0.16 5.42 -19.86 -0.11 -0.26 16 20 C -0.08 0.24 2.81 71.23 0.20 0.45 16 21 O -0.56 0.63 12.74 -148.98 -1.90 -1.27 16 22 Si 0.98 -4.61 25.07 68.60 1.72 -2.89 16 23 H -0.26 1.04 7.11 99.48 0.71 1.75 16 24 H -0.25 1.21 7.11 99.48 0.71 1.92 16 25 H -0.26 0.52 7.11 99.48 0.71 1.23 16 26 C -0.03 -0.15 9.35 22.27 0.21 0.06 16 27 C -0.14 -1.10 6.24 22.40 0.14 -0.96 16 28 Br -0.05 -0.55 33.16 -20.37 -0.68 -1.23 16 29 C -0.14 -0.15 9.70 22.27 0.22 0.07 16 30 C -0.10 -0.10 9.29 22.27 0.21 0.11 16 31 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 35 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 36 H 0.07 -0.25 7.69 -2.39 -0.02 -0.26 16 37 H 0.07 -0.24 7.69 -2.38 -0.02 -0.26 16 38 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 39 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 40 H 0.13 -0.32 7.43 -2.91 -0.02 -0.35 16 41 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.10 -0.80 8.08 -2.39 -0.02 -0.82 16 43 H 0.10 -0.79 8.09 -2.39 -0.02 -0.81 16 44 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.42 -5.42 8.47 -92.71 -0.79 -6.20 16 47 H 0.13 -1.44 7.65 -2.39 -0.02 -1.46 16 48 H 0.13 -1.36 7.68 -2.39 -0.02 -1.38 16 49 H 0.18 -1.94 6.30 -2.91 -0.02 -1.96 16 50 H 0.15 -0.92 4.87 -2.91 -0.01 -0.94 16 51 H 0.09 -0.61 7.96 -2.39 -0.02 -0.63 16 52 H 0.40 -4.00 8.74 -74.06 -0.65 -4.64 16 53 H 0.14 0.55 8.06 -2.91 -0.02 0.52 16 54 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 55 H 0.13 -0.34 7.43 -2.91 -0.02 -0.36 16 Total: 0.00 -28.97 475.81 3.72 -25.25 By element: Atomic # 1 Polarization: -16.52 SS G_CDS: 0.24 Total: -16.28 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.46 Total: 11.75 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -2.57 Total: 0.37 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -2.30 Total: -12.82 kcal Atomic # 14 Polarization: -9.62 SS G_CDS: 2.56 Total: -7.05 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -0.68 Total: -1.23 kcal Total: -28.97 3.72 -25.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12221182_6201210.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.604 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds