Wall clock time and date at job start Tue Mar 9 2021 14:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47480 * 2 1 4 4 C 1.53001 * 109.47266 * 120.00320 * 2 1 3 5 5 C 1.53001 * 109.47114 * 64.99833 * 4 2 1 6 6 O 1.42899 * 109.47170 * 180.02562 * 5 4 2 7 7 C 1.42895 * 114.00350 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46880 * 29.99836 * 7 6 5 9 9 C 1.52997 * 109.47503 * 149.99960 * 7 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47233 * 299.99657 * 10 9 7 12 12 H 1.09002 * 109.47075 * 300.00932 * 11 10 9 13 13 N 1.46492 * 109.47204 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99930 * 155.00105 * 13 11 10 15 15 O 1.21284 * 120.00068 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00162 * 179.97438 * 14 13 11 17 17 C 1.50699 * 109.47298 * 180.02562 * 16 14 13 18 18 C 1.34845 * 125.88843 * 274.69357 * 17 16 14 19 19 C 1.40902 * 107.41477 * 179.88555 * 18 17 16 20 20 C 1.34846 * 107.41409 * 0.37711 * 19 18 17 21 21 C 1.50703 * 125.88742 * 179.80757 * 20 19 18 22 22 O 1.42900 * 109.47161 * 119.95684 * 21 20 19 23 23 Si 1.86296 * 109.47402 * 359.95736 * 21 20 19 24 24 N 1.36340 * 125.88804 * 95.00087 * 17 16 14 25 25 C 1.52997 * 109.46817 * 60.00194 * 11 10 9 26 26 C 1.52999 * 109.47162 * 270.00457 * 7 6 5 27 27 H 1.09000 * 109.46901 * 300.00260 * 1 2 3 28 28 H 1.08998 * 109.46769 * 59.99777 * 1 2 3 29 29 H 1.08995 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47375 * 239.99910 * 2 1 3 31 31 H 1.08996 * 109.47383 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46970 * 300.00327 * 3 2 1 33 33 H 1.09000 * 109.46523 * 59.99987 * 3 2 1 34 34 H 1.09003 * 109.47231 * 304.99738 * 4 2 1 35 35 H 1.09000 * 109.47277 * 184.99844 * 4 2 1 36 36 H 1.08994 * 109.47095 * 60.00097 * 5 4 2 37 37 H 1.09000 * 109.47058 * 300.00145 * 5 4 2 38 38 H 1.09002 * 109.47153 * 60.00043 * 9 7 6 39 39 H 1.09001 * 109.46832 * 300.00234 * 9 7 6 40 40 H 1.08992 * 109.47399 * 59.99823 * 10 9 7 41 41 H 1.09004 * 109.46724 * 180.02562 * 10 9 7 42 42 H 0.96998 * 120.00353 * 335.00390 * 13 11 10 43 43 H 1.09002 * 109.46771 * 300.00415 * 16 14 13 44 44 H 1.09000 * 109.47270 * 60.00009 * 16 14 13 45 45 H 1.08002 * 126.29811 * 0.02562 * 18 17 16 46 46 H 1.07999 * 126.28979 * 180.12989 * 19 18 17 47 47 H 1.09006 * 109.46936 * 239.95564 * 21 20 19 48 48 H 0.96701 * 114.00111 * 299.99932 * 22 21 20 49 49 H 1.48498 * 109.99886 * 58.67833 * 23 21 20 50 50 H 1.48491 * 110.00085 * 180.02562 * 23 21 20 51 51 H 0.97000 * 125.64179 * 359.95886 * 24 17 16 52 52 H 1.09002 * 109.47153 * 60.00231 * 25 11 10 53 53 H 1.09001 * 109.47289 * 180.02562 * 25 11 10 54 54 H 1.09000 * 109.47486 * 59.99398 * 26 7 6 55 55 H 1.09002 * 109.46716 * 299.99480 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 8 2.1111 -2.8691 2.3549 7 6 1.7841 -4.2595 2.3974 8 1 1.7250 -4.6501 1.3815 9 6 2.8663 -5.0145 3.1718 10 6 2.5165 -6.5033 3.2168 11 6 1.1671 -6.6893 3.9136 12 1 1.2260 -6.2989 4.9296 13 7 0.8325 -8.1148 3.9572 14 6 0.0044 -8.5838 4.9117 15 8 -0.4641 -7.8255 5.7341 16 6 -0.3403 -10.0501 4.9562 17 6 -1.2761 -10.3114 6.1082 18 6 -0.9118 -10.5425 7.3858 19 6 -2.0912 -10.7332 8.1327 20 6 -3.1308 -10.6197 7.2814 21 6 -4.5876 -10.7547 7.6431 22 8 -5.2701 -9.5381 7.3331 23 14 -4.7449 -11.1080 9.4654 24 7 -2.6368 -10.3608 6.0373 25 6 0.0850 -5.9344 3.1392 26 6 0.4348 -4.4451 3.0944 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 2.0698 -2.6550 0.3002 37 1 0.5489 -2.2724 1.1420 38 1 2.9255 -4.6239 4.1878 39 1 3.8276 -4.8823 2.6752 40 1 2.4576 -6.8935 2.2009 41 1 3.2873 -7.0410 3.7689 42 1 1.2069 -8.7213 3.2993 43 1 -0.8243 -10.3381 4.0229 44 1 0.5707 -10.6338 5.0882 45 1 0.0982 -10.5733 7.7670 46 1 -2.1513 -10.9371 9.1916 47 1 -5.0286 -11.5737 7.0747 48 1 -4.9297 -8.7652 7.8040 49 1 -4.1190 -10.0141 10.2507 50 1 -6.1768 -11.2440 9.8346 51 1 -3.1659 -10.2327 5.2345 52 1 0.0261 -6.3247 2.1232 53 1 -0.8763 -6.0665 3.6358 54 1 -0.3362 -3.9072 2.5427 55 1 0.4940 -4.0545 4.1104 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_14644196.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:15:46 Heat of formation + Delta-G solvation = -99.177568 kcal Electronic energy + Delta-G solvation = -30950.229647 eV Core-core repulsion = 26760.166497 eV Total energy + Delta-G solvation = -4190.063150 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.224 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.34253 -41.06416 -39.94035 -38.29009 -37.86333 -36.91772 -34.74346 -33.12373 -31.93468 -31.91107 -30.86182 -29.74192 -28.54733 -28.07767 -25.27466 -24.33022 -23.76402 -23.14880 -21.72985 -21.39758 -21.31729 -20.96839 -20.67384 -19.05647 -18.12942 -17.84808 -17.54110 -16.85562 -16.79435 -16.53859 -16.39723 -16.16339 -15.59720 -15.35298 -15.20389 -14.90349 -14.87425 -14.84461 -14.61632 -14.37466 -14.10386 -14.07219 -13.86710 -13.74780 -13.60958 -13.51896 -13.28749 -13.11699 -12.93046 -12.77889 -12.63793 -12.40336 -12.24135 -12.21238 -12.19997 -11.88120 -11.76417 -11.65654 -11.55063 -11.46063 -11.41889 -10.96191 -10.84801 -10.43909 -10.07781 -9.80130 -8.96913 -4.89746 1.07230 1.30207 1.62353 1.66221 1.84361 1.92679 2.27655 2.48574 2.63797 3.34995 3.56069 3.63587 3.68908 3.79956 3.85423 3.88584 3.95707 4.01035 4.02932 4.11555 4.15387 4.21981 4.24712 4.26029 4.37422 4.40095 4.42810 4.43353 4.50446 4.50823 4.59113 4.64294 4.69979 4.74753 4.79706 4.80100 4.87969 4.92152 4.96883 4.97592 5.04565 5.06608 5.06691 5.10115 5.23266 5.25280 5.26363 5.28373 5.29075 5.38590 5.44089 5.49892 5.97777 6.12682 6.29384 6.35772 6.54226 6.67334 7.27999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.112 4.112 5 C 0.059 3.941 6 O -0.403 6.403 7 C 0.090 3.910 8 H 0.076 0.924 9 C -0.112 4.112 10 C -0.112 4.112 11 C 0.146 3.854 12 H 0.059 0.941 13 N -0.713 5.713 14 C 0.510 3.490 15 O -0.579 6.579 16 C -0.066 4.066 17 C 0.034 3.966 18 C -0.201 4.201 19 C -0.202 4.202 20 C -0.019 4.019 21 C -0.062 4.062 22 O -0.554 6.554 23 Si 0.798 3.202 24 N -0.537 5.537 25 C -0.117 4.117 26 C -0.135 4.135 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.419 0.581 43 H 0.129 0.871 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.150 0.850 47 H 0.128 0.872 48 H 0.385 0.615 49 H -0.294 1.294 50 H -0.295 1.295 51 H 0.418 0.582 52 H 0.083 0.917 53 H 0.045 0.955 54 H 0.065 0.935 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -4.956 -6.483 9.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.017 4.017 6 O -0.323 6.323 7 C 0.033 3.967 8 H 0.094 0.906 9 C -0.150 4.150 10 C -0.149 4.149 11 C 0.041 3.959 12 H 0.077 0.923 13 N -0.366 5.366 14 C 0.297 3.703 15 O -0.458 6.458 16 C -0.107 4.107 17 C -0.080 4.080 18 C -0.225 4.225 19 C -0.227 4.227 20 C -0.133 4.133 21 C -0.170 4.170 22 O -0.362 6.362 23 Si 0.702 3.298 24 N -0.132 5.132 25 C -0.156 4.156 26 C -0.174 4.174 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.257 0.743 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.168 0.832 47 H 0.146 0.854 48 H 0.234 0.766 49 H -0.220 1.220 50 H -0.223 1.223 51 H 0.256 0.744 52 H 0.102 0.898 53 H 0.064 0.936 54 H 0.083 0.917 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.893 -4.437 -5.523 7.652 hybrid contribution -0.467 1.357 -0.767 1.627 sum 2.426 -3.080 -6.290 7.412 Atomic orbital electron populations 1.21934 0.95032 1.01960 1.02029 1.21040 0.96042 0.96476 0.97474 1.21838 1.01197 0.95492 1.02051 1.21563 1.01563 0.93211 0.98584 1.22706 0.98427 0.93149 0.87445 1.87894 1.78521 1.22398 1.43526 1.22207 0.93798 0.81244 0.99477 0.90574 1.21518 0.98516 0.94157 1.00859 1.21702 0.95083 0.95735 1.02423 1.20909 0.94802 0.80731 0.99498 0.92270 1.45917 1.48672 1.09578 1.32413 1.21090 0.77965 0.91139 0.80133 1.90759 1.53737 1.60319 1.40981 1.20265 1.00700 0.92220 0.97467 1.19940 0.83000 1.08264 0.96835 1.20852 0.99086 1.09845 0.92723 1.20912 0.92035 1.10021 0.99703 1.20907 0.95795 1.11078 0.85498 1.25007 0.86955 0.89651 1.15416 1.86530 1.60986 1.18546 1.70149 0.93444 0.78101 0.87958 0.70254 1.41877 1.06178 1.55525 1.09637 1.21778 0.98209 0.94378 1.01235 1.21950 0.97846 0.96337 1.01237 0.92997 0.92126 0.92379 0.90476 0.92417 0.92050 0.92900 0.92149 0.91462 0.92402 0.92930 0.92260 0.89861 0.88770 0.89476 0.74300 0.85277 0.83658 0.84146 0.83209 0.85409 0.76588 1.22040 1.22298 0.74403 0.89807 0.93611 0.91663 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 8.95 71.98 0.64 0.85 16 2 C -0.09 0.11 2.92 -10.79 -0.03 0.08 16 3 C -0.15 0.17 9.19 71.98 0.66 0.83 16 4 C -0.11 -0.09 5.05 30.59 0.15 0.06 16 5 C 0.06 0.04 5.50 71.98 0.40 0.44 16 6 O -0.40 -1.80 9.99 -148.98 -1.49 -3.29 16 7 C 0.09 0.00 2.61 30.59 0.08 0.08 16 8 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 9 C -0.11 0.21 5.57 30.59 0.17 0.38 16 10 C -0.11 0.67 5.39 30.60 0.16 0.83 16 11 C 0.15 -0.16 2.45 44.99 0.11 -0.05 16 12 H 0.06 0.35 7.58 -2.39 -0.02 0.33 16 13 N -0.71 3.20 5.08 -442.54 -2.25 0.96 16 14 C 0.51 0.77 7.79 87.66 0.68 1.46 16 15 O -0.58 -7.55 15.70 -3.04 -0.05 -7.60 16 16 C -0.07 0.33 6.24 29.10 0.18 0.51 16 17 C 0.03 0.09 5.66 41.08 0.23 0.32 16 18 C -0.20 -1.08 10.77 22.14 0.24 -0.84 16 19 C -0.20 -1.03 9.37 22.14 0.21 -0.82 16 20 C -0.02 -0.08 6.51 41.08 0.27 0.19 16 21 C -0.06 -0.11 3.08 71.24 0.22 0.11 16 22 O -0.55 -3.01 12.88 -148.98 -1.92 -4.93 16 23 Si 0.80 0.34 30.58 68.60 2.10 2.44 16 24 N -0.54 -1.47 6.07 -171.12 -1.04 -2.51 16 25 C -0.12 0.00 5.50 30.61 0.17 0.17 16 26 C -0.14 -0.23 5.54 30.61 0.17 -0.06 16 27 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.06 -0.11 6.57 -2.39 -0.02 -0.12 16 30 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.06 -0.08 8.14 -2.39 -0.02 -0.09 16 32 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.07 0.10 8.14 -2.39 -0.02 0.09 16 36 H 0.06 -0.09 8.09 -2.39 -0.02 -0.11 16 37 H 0.05 0.00 6.29 -2.39 -0.02 -0.01 16 38 H 0.06 0.09 8.14 -2.39 -0.02 0.08 16 39 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.42 -5.04 8.60 -92.71 -0.80 -5.84 16 43 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 44 H 0.15 -1.51 8.14 -2.39 -0.02 -1.53 16 45 H 0.14 0.46 8.06 -2.91 -0.02 0.44 16 46 H 0.15 0.28 6.22 -2.91 -0.02 0.26 16 47 H 0.13 -0.15 7.96 -2.38 -0.02 -0.17 16 48 H 0.38 0.79 8.70 -74.06 -0.64 0.14 16 49 H -0.29 -1.86 7.11 99.48 0.71 -1.16 16 50 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 51 H 0.42 -0.28 8.96 -92.71 -0.83 -1.11 16 52 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 53 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 54 H 0.06 0.11 7.87 -2.39 -0.02 0.10 16 55 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 Total: 0.00 -22.80 433.69 -1.28 -24.08 By element: Atomic # 1 Polarization: -12.32 SS G_CDS: -1.36 Total: -13.67 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.72 Total: 4.53 kcal Atomic # 7 Polarization: 1.73 SS G_CDS: -3.29 Total: -1.55 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -3.45 Total: -15.82 kcal Atomic # 14 Polarization: 0.34 SS G_CDS: 2.10 Total: 2.44 kcal Total: -22.80 -1.28 -24.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_14644196.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.093 kcal (2) G-P(sol) polarization free energy of solvation -22.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds