Wall clock time and date at job start Tue Mar 9 2021 14:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46946 * 2 1 4 4 C 1.52996 * 109.47212 * 120.00048 * 2 1 3 5 5 C 1.52997 * 109.47338 * 175.00061 * 4 2 1 6 6 O 1.42898 * 109.47378 * 179.97438 * 5 4 2 7 7 C 1.42899 * 114.00129 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47093 * 329.99926 * 7 6 5 9 9 C 1.53000 * 109.47436 * 90.00196 * 7 6 5 10 10 C 1.52995 * 109.47402 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47057 * 299.99967 * 10 9 7 12 12 H 1.09001 * 109.46881 * 299.99915 * 11 10 9 13 13 N 1.46498 * 109.47312 * 180.02562 * 11 10 9 14 14 C 1.34777 * 120.00449 * 84.99752 * 13 11 10 15 15 O 1.21697 * 119.99538 * 5.16509 * 14 13 11 16 16 C 1.46675 * 120.00438 * 185.17036 * 14 13 11 17 17 C 1.37889 * 126.22194 * 355.01767 * 16 14 13 18 18 C 1.39882 * 107.08760 * 179.76941 * 17 16 14 19 19 Br 1.89104 * 126.07016 * 180.24189 * 18 17 16 20 20 C 1.35500 * 107.85275 * 0.38092 * 18 17 16 21 21 C 1.50701 * 125.57058 * 179.87539 * 20 18 17 22 22 O 1.42903 * 109.46904 * 65.35233 * 21 20 18 23 23 Si 1.86300 * 109.47042 * 305.35334 * 21 20 18 24 24 N 1.35606 * 108.86113 * 359.61769 * 20 18 17 25 25 C 1.46496 * 125.67648 * 180.21930 * 24 20 18 26 26 C 1.53002 * 109.47499 * 59.99901 * 11 10 9 27 27 C 1.52995 * 109.47135 * 210.00232 * 7 6 5 28 28 H 1.08997 * 109.47255 * 300.00029 * 1 2 3 29 29 H 1.09001 * 109.47471 * 60.00051 * 1 2 3 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47341 * 240.00497 * 2 1 3 32 32 H 1.08996 * 109.47104 * 299.99768 * 3 2 1 33 33 H 1.09000 * 109.46695 * 60.00101 * 3 2 1 34 34 H 1.08996 * 109.46953 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47405 * 55.00097 * 4 2 1 36 36 H 1.09005 * 109.47158 * 295.00290 * 4 2 1 37 37 H 1.09002 * 109.47303 * 60.00163 * 5 4 2 38 38 H 1.08996 * 109.47404 * 300.00299 * 5 4 2 39 39 H 1.09008 * 109.46949 * 299.99764 * 9 7 6 40 40 H 1.09001 * 109.47199 * 59.99796 * 9 7 6 41 41 H 1.09004 * 109.47079 * 179.97438 * 10 9 7 42 42 H 1.09001 * 109.47206 * 59.99683 * 10 9 7 43 43 H 0.97001 * 120.00163 * 265.00093 * 13 11 10 44 44 H 1.08001 * 126.45586 * 0.02965 * 17 16 14 45 45 H 1.08997 * 109.47440 * 185.35000 * 21 20 18 46 46 H 0.96702 * 113.99733 * 300.00006 * 22 21 20 47 47 H 1.48506 * 109.99897 * 174.99238 * 23 21 20 48 48 H 1.48497 * 110.00089 * 296.30705 * 23 21 20 49 49 H 1.09000 * 109.47042 * 95.53126 * 25 24 20 50 50 H 1.08999 * 109.46671 * 215.52674 * 25 24 20 51 51 H 1.08998 * 109.47382 * 335.53032 * 25 24 20 52 52 H 1.09001 * 109.47043 * 60.00113 * 26 11 10 53 53 H 1.08999 * 109.47419 * 180.02562 * 26 11 10 54 54 H 1.09004 * 109.47634 * 59.99689 * 27 7 6 55 55 H 1.08998 * 109.47213 * 299.99432 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 8 4.0412 -1.5041 2.3550 7 6 5.4611 -1.6593 2.3975 8 1 5.8491 -1.7338 1.3816 9 6 6.0858 -0.4491 3.0946 10 6 7.6061 -0.6150 3.1396 11 6 7.9576 -1.8870 3.9137 12 1 7.5700 -1.8128 4.9298 13 7 9.4133 -2.0456 3.9574 14 6 10.1310 -1.4211 4.9121 15 8 9.5633 -0.8025 5.7931 16 6 11.5961 -1.4869 4.8892 17 6 12.3650 -2.2249 4.0144 18 6 13.7037 -1.9909 4.3458 19 35 15.2115 -2.7341 3.4796 20 6 13.7281 -1.1395 5.3996 21 6 14.9691 -0.6234 6.0811 22 8 15.7066 0.1954 5.1712 23 14 16.0253 -2.0605 6.6194 24 7 12.4534 -0.8232 5.7372 25 6 12.0551 0.0749 6.8239 26 6 7.3329 -3.0973 3.2167 27 6 5.8121 -2.9313 3.1720 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1583 2.1370 37 1 3.9995 0.1675 1.1421 38 1 3.8532 -1.3939 0.3003 39 1 5.8358 0.4571 2.5428 40 1 5.6979 -0.3746 4.1105 41 1 8.0512 0.2475 3.6359 42 1 7.9937 -0.6892 2.1236 43 1 9.8608 -2.6000 3.2991 44 1 12.0022 -2.8603 3.2200 45 1 14.6863 -0.0336 6.9531 46 1 15.9916 -0.2652 4.3701 47 1 17.3068 -1.5658 7.1837 48 1 15.3029 -2.8702 7.6332 49 1 11.8866 1.0753 6.4252 50 1 11.1368 -0.2933 7.2813 51 1 12.8454 0.1109 7.5736 52 1 7.7206 -3.1716 2.2006 53 1 7.5830 -4.0035 3.7684 54 1 5.3670 -3.7936 2.6754 55 1 5.4242 -2.8568 4.1879 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12222500_5000100.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:12 Heat of formation + Delta-G solvation = -84.215108 kcal Electronic energy + Delta-G solvation = -33525.573255 eV Core-core repulsion = 28996.340923 eV Total energy + Delta-G solvation = -4529.232332 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.135 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.90298 -40.99916 -39.86846 -38.28384 -37.90977 -36.92511 -35.14879 -34.31628 -32.39533 -31.89498 -31.18527 -30.64588 -29.16923 -28.06190 -27.45937 -26.81103 -24.32047 -23.99639 -23.46422 -22.72796 -21.46129 -21.27899 -20.81639 -20.41859 -19.08540 -18.27313 -17.80910 -17.42464 -17.28373 -16.87321 -16.71875 -16.34388 -16.01125 -15.74340 -15.60609 -15.41562 -15.01677 -14.91035 -14.85842 -14.75228 -14.60318 -14.38654 -14.19523 -14.13565 -13.85437 -13.69451 -13.58974 -13.27144 -13.26005 -13.10227 -12.91987 -12.66534 -12.61664 -12.39871 -12.38434 -12.23854 -12.17214 -12.01090 -11.74816 -11.64353 -11.57079 -11.51744 -11.43825 -11.39158 -11.16149 -10.89286 -10.43504 -10.19236 -9.85407 -9.35533 -5.01560 0.11674 0.47352 0.89699 1.14165 1.45265 1.54984 1.83383 2.12692 2.20996 2.64367 3.14715 3.38057 3.49522 3.59921 3.63641 3.66428 3.82878 3.88536 3.91163 3.99745 4.03787 4.09129 4.10536 4.17732 4.22422 4.25772 4.28695 4.36974 4.38527 4.43204 4.45577 4.52548 4.53123 4.58484 4.67935 4.72049 4.76859 4.81719 4.90182 4.94231 4.98675 5.01012 5.06420 5.08886 5.09551 5.12661 5.23615 5.24791 5.29321 5.30108 5.40896 5.43364 5.46365 5.56093 5.74240 6.32676 6.35774 6.39442 7.03748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.112 4.112 5 C 0.059 3.941 6 O -0.403 6.403 7 C 0.089 3.911 8 H 0.076 0.924 9 C -0.134 4.134 10 C -0.119 4.119 11 C 0.148 3.852 12 H 0.069 0.931 13 N -0.697 5.697 14 C 0.590 3.410 15 O -0.579 6.579 16 C -0.057 4.057 17 C -0.091 4.091 18 C -0.184 4.184 19 Br 0.036 6.964 20 C 0.048 3.952 21 C -0.052 4.052 22 O -0.540 6.540 23 Si 0.715 3.285 24 N -0.398 5.398 25 C 0.060 3.940 26 C -0.113 4.113 27 C -0.111 4.111 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.419 0.581 44 H 0.189 0.811 45 H 0.121 0.879 46 H 0.389 0.611 47 H -0.263 1.263 48 H -0.278 1.278 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.095 0.905 53 H 0.087 0.913 54 H 0.083 0.917 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -3.266 -6.137 6.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.149 4.149 5 C -0.017 4.017 6 O -0.323 6.323 7 C 0.031 3.969 8 H 0.094 0.906 9 C -0.172 4.172 10 C -0.157 4.157 11 C 0.044 3.956 12 H 0.087 0.913 13 N -0.349 5.349 14 C 0.379 3.621 15 O -0.460 6.460 16 C -0.170 4.170 17 C -0.118 4.118 18 C -0.269 4.269 19 Br 0.120 6.880 20 C -0.074 4.074 21 C -0.163 4.163 22 O -0.347 6.347 23 Si 0.616 3.384 24 N -0.071 5.071 25 C -0.080 4.080 26 C -0.151 4.151 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.257 0.743 44 H 0.206 0.794 45 H 0.139 0.861 46 H 0.239 0.761 47 H -0.189 1.189 48 H -0.204 1.204 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.121 0.879 52 H 0.113 0.887 53 H 0.106 0.894 54 H 0.102 0.898 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.695 -2.855 -4.298 5.206 hybrid contribution -0.588 0.934 0.318 1.148 sum 0.107 -1.921 -3.979 4.420 Atomic orbital electron populations 1.21838 0.94689 1.02028 1.02036 1.21038 0.96167 0.96334 0.97503 1.21935 1.01199 0.95800 1.02011 1.21558 0.93587 1.01213 0.98558 1.22700 0.95193 0.96367 0.87455 1.87892 1.22199 1.78721 1.43462 1.22222 0.80373 0.94724 0.99539 0.90588 1.21930 0.94907 0.98932 1.01462 1.21793 0.95279 0.97303 1.01369 1.21034 0.78428 0.95895 1.00248 0.91282 1.45557 1.07686 1.50097 1.31516 1.17013 0.84827 0.78732 0.81572 1.90811 1.72713 1.44997 1.37490 1.20187 0.90882 1.06527 0.99442 1.21553 0.89791 1.00505 0.99940 1.20847 0.94337 1.08667 1.03068 1.96615 1.34035 1.83108 1.74277 1.21089 0.86246 1.00818 0.99205 1.24829 0.91486 1.04805 0.95152 1.86515 1.72950 1.40141 1.35115 0.93162 0.78096 0.78965 0.88175 1.43962 1.04473 1.33674 1.24988 1.22438 1.03548 0.93634 0.88411 1.21727 0.94049 0.96802 1.02513 1.21512 0.95445 0.96949 1.01008 0.92881 0.92100 0.92455 0.90526 0.92189 0.92968 0.92318 0.91519 0.92094 0.92845 0.92466 0.91498 0.92481 0.93230 0.89766 0.74315 0.79406 0.86136 0.76114 1.18853 1.20388 0.89636 0.88493 0.87884 0.88662 0.89439 0.89848 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 9.19 71.98 0.66 0.89 16 2 C -0.09 0.15 2.92 -10.79 -0.03 0.12 16 3 C -0.15 0.28 8.95 71.98 0.64 0.92 16 4 C -0.11 -0.02 5.05 30.59 0.15 0.13 16 5 C 0.06 0.00 5.50 71.98 0.40 0.39 16 6 O -0.40 -1.39 9.99 -148.98 -1.49 -2.88 16 7 C 0.09 -0.10 2.61 30.59 0.08 -0.02 16 8 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 9 C -0.13 -0.02 5.54 30.59 0.17 0.15 16 10 C -0.12 0.13 5.49 30.59 0.17 0.30 16 11 C 0.15 -0.27 2.50 44.99 0.11 -0.16 16 12 H 0.07 0.27 7.51 -2.39 -0.02 0.25 16 13 N -0.70 1.97 5.06 -446.51 -2.26 -0.29 16 14 C 0.59 2.43 7.74 86.45 0.67 3.10 16 15 O -0.58 -6.60 14.40 -4.34 -0.06 -6.66 16 16 C -0.06 -0.15 6.88 40.35 0.28 0.13 16 17 C -0.09 0.18 10.34 22.59 0.23 0.41 16 18 C -0.18 0.06 6.04 22.03 0.13 0.20 16 19 Br 0.04 -0.14 29.40 -20.37 -0.60 -0.74 16 20 C 0.05 0.11 5.48 41.34 0.23 0.33 16 21 C -0.05 -0.07 2.82 71.24 0.20 0.13 16 22 O -0.54 -1.39 12.88 -148.98 -1.92 -3.31 16 23 Si 0.72 0.88 29.64 68.60 2.03 2.91 16 24 N -0.40 -1.48 3.16 -519.62 -1.64 -3.12 16 25 C 0.06 0.10 10.27 127.77 1.31 1.41 16 26 C -0.11 0.74 5.40 30.61 0.17 0.91 16 27 C -0.11 0.32 5.58 30.61 0.17 0.49 16 28 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.06 -0.14 6.56 -2.39 -0.02 -0.16 16 35 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.05 -0.05 6.29 -2.39 -0.02 -0.06 16 38 H 0.06 -0.12 8.09 -2.39 -0.02 -0.14 16 39 H 0.07 0.02 7.87 -2.38 -0.02 0.00 16 40 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.05 0.18 8.14 -2.39 -0.02 0.17 16 42 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.42 -3.88 7.50 -92.71 -0.70 -4.58 16 44 H 0.19 -1.73 7.45 -2.91 -0.02 -1.76 16 45 H 0.12 0.02 6.33 -2.39 -0.02 0.00 16 46 H 0.39 -0.97 7.20 -74.06 -0.53 -1.51 16 47 H -0.26 -1.51 7.11 99.48 0.71 -0.81 16 48 H -0.28 -1.79 7.11 99.48 0.71 -1.08 16 49 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.10 0.41 6.54 -2.39 -0.02 0.40 16 51 H 0.10 -0.27 6.67 -2.39 -0.02 -0.29 16 52 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 53 H 0.09 -0.66 8.14 -2.39 -0.02 -0.67 16 54 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 55 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -16.35 443.13 -0.49 -16.85 By element: Atomic # 1 Polarization: -12.29 SS G_CDS: -0.30 Total: -12.59 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.74 Total: 9.83 kcal Atomic # 7 Polarization: 0.49 SS G_CDS: -3.90 Total: -3.42 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -3.47 Total: -12.85 kcal Atomic # 14 Polarization: 0.88 SS G_CDS: 2.03 Total: 2.91 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.60 Total: -0.74 kcal Total: -16.35 -0.49 -16.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12222500_5000100.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.369 kcal (2) G-P(sol) polarization free energy of solvation -16.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds