Wall clock time and date at job start Tue Mar 9 2021 14:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.47213 * 2 1 4 4 C 1.50699 * 109.46895 * 119.99823 * 2 1 3 5 5 C 1.38617 * 119.83993 * 195.02342 * 4 2 1 6 6 F 1.35100 * 119.91641 * 359.95123 * 5 4 2 7 7 C 1.38115 * 120.16304 * 179.97438 * 5 4 2 8 8 C 1.39616 * 119.85174 * 359.97438 * 7 5 4 9 9 C 1.47695 * 120.15264 * 180.29974 * 8 7 5 10 10 O 1.21576 * 119.99954 * 179.72300 * 9 8 7 11 11 N 1.34780 * 120.00290 * 359.72065 * 9 8 7 12 12 C 1.46499 * 120.00136 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47002 * 324.99630 * 12 11 9 14 14 C 1.52994 * 109.47104 * 85.00073 * 12 11 9 15 15 C 1.53005 * 109.46944 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47050 * 299.99881 * 15 14 12 17 17 H 1.09007 * 109.47254 * 300.00051 * 16 15 14 18 18 C 1.53001 * 109.47513 * 180.02562 * 16 15 14 19 19 F 1.39907 * 109.46741 * 299.99937 * 18 16 15 20 20 F 1.39896 * 109.46976 * 59.99663 * 18 16 15 21 21 F 1.39895 * 109.47408 * 180.02562 * 18 16 15 22 22 C 1.52998 * 109.47157 * 59.99869 * 16 15 14 23 23 C 1.53000 * 109.46667 * 204.99955 * 12 11 9 24 24 C 1.39845 * 119.69031 * 0.02562 * 8 7 5 25 25 F 1.35100 * 120.07992 * 180.02562 * 24 8 7 26 26 C 1.38229 * 119.84585 * 14.99968 * 4 2 1 27 27 H 0.96703 * 113.99854 * 300.00072 * 1 2 3 28 28 H 1.08995 * 109.47310 * 239.99870 * 2 1 3 29 29 H 1.48494 * 109.99831 * 178.68408 * 3 2 1 30 30 H 1.48502 * 109.99521 * 299.99958 * 3 2 1 31 31 H 1.08004 * 120.07182 * 180.02562 * 7 5 4 32 32 H 0.97007 * 119.99447 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47314 * 299.99435 * 14 12 11 34 34 H 1.08995 * 109.47553 * 59.99895 * 14 12 11 35 35 H 1.09002 * 109.47100 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.47141 * 59.99570 * 15 14 12 37 37 H 1.09002 * 109.47321 * 180.02562 * 22 16 15 38 38 H 1.08995 * 109.47243 * 60.00184 * 22 16 15 39 39 H 1.09000 * 109.47558 * 299.99390 * 23 12 11 40 40 H 1.09002 * 109.47338 * 59.99979 * 23 12 11 41 41 H 1.08004 * 119.92772 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.2561 -0.5721 1.6143 6 9 4.0923 0.1978 0.8840 7 6 3.7234 -1.2197 2.7412 8 6 2.8579 -2.0148 3.4948 9 6 3.3489 -2.7051 4.7047 10 8 2.5917 -3.3927 5.3618 11 7 4.6365 -2.5726 5.0805 12 6 5.1236 -3.2578 6.2803 13 1 4.3340 -3.2810 7.0312 14 6 5.5285 -4.6888 5.9214 15 6 6.0367 -5.4045 7.1746 16 6 7.2488 -4.6564 7.7330 17 1 8.0389 -4.6331 6.9823 18 6 7.7574 -5.3724 8.9859 19 9 6.7436 -5.4027 9.9495 20 9 8.1277 -6.6808 8.6573 21 9 8.8654 -4.6879 9.4967 22 6 6.8440 -3.2252 8.0918 23 6 6.3360 -2.5094 6.8380 24 6 1.5226 -2.1500 3.1020 25 9 0.6782 -2.9171 3.8258 26 6 1.0687 -1.4964 1.9713 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5138 -0.8899 29 1 3.5346 1.7702 0.0320 30 1 1.5615 2.4678 -1.2085 31 1 4.7557 -1.1105 3.0391 32 1 5.2408 -2.0243 4.5559 33 1 4.6648 -5.2220 5.5241 34 1 6.3182 -4.6656 5.1705 35 1 6.3247 -6.4243 6.9191 36 1 5.2467 -5.4278 7.9253 37 1 7.7077 -2.6921 8.4892 38 1 6.0540 -3.2485 8.8424 39 1 7.1257 -2.4861 6.0871 40 1 6.0475 -1.4897 7.0936 41 1 0.0377 -1.5998 1.6666 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_12360598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:57 Heat of formation + Delta-G solvation = -277.345290 kcal Electronic energy + Delta-G solvation = -33333.921575 eV Core-core repulsion = 27822.432672 eV Total energy + Delta-G solvation = -5511.488903 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.104 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.12313 -50.41923 -50.07446 -48.61701 -48.59877 -41.50819 -40.21855 -39.19855 -37.64263 -35.68980 -33.31445 -31.94092 -31.47682 -31.24875 -28.02251 -26.38086 -24.20689 -24.07240 -23.86398 -22.73187 -21.72832 -21.28639 -19.70047 -19.27945 -19.20825 -19.06757 -18.61186 -18.52547 -17.86106 -17.48818 -17.30166 -16.96120 -16.70685 -16.13943 -16.02017 -15.85115 -15.72919 -15.65775 -15.61664 -15.26669 -15.12867 -15.02304 -14.96365 -14.77120 -14.76491 -14.56155 -14.42966 -14.17485 -13.73237 -13.69334 -13.56601 -13.30812 -13.21255 -12.96428 -12.51071 -12.46550 -12.22721 -12.09582 -11.64089 -11.55496 -11.44409 -11.09751 -10.98425 -10.28390 -10.14856 -9.69832 -4.98740 -0.75703 -0.25664 1.15748 1.49853 1.66430 1.73875 1.89728 1.99894 2.31558 2.79258 2.82818 2.87319 2.95618 3.03730 3.15738 3.21830 3.51992 3.53925 3.61333 3.65678 3.83733 3.88981 4.06592 4.09631 4.21251 4.22382 4.27118 4.35401 4.38574 4.41585 4.54546 4.66995 4.71409 4.76977 4.80456 4.88176 4.97450 5.04780 5.05960 5.19259 5.20597 5.39398 5.44073 6.35166 6.64114 7.03608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.073 4.073 3 Si 0.764 3.236 4 C -0.084 4.084 5 C 0.071 3.929 6 F -0.121 7.121 7 C -0.067 4.067 8 C -0.158 4.158 9 C 0.558 3.442 10 O -0.562 6.562 11 N -0.702 5.702 12 C 0.141 3.859 13 H 0.071 0.929 14 C -0.120 4.120 15 C -0.115 4.115 16 C -0.124 4.124 17 H 0.139 0.861 18 C 0.447 3.553 19 F -0.192 7.192 20 F -0.193 7.193 21 F -0.189 7.189 22 C -0.116 4.116 23 C -0.112 4.112 24 C 0.138 3.862 25 F -0.128 7.128 26 C -0.117 4.117 27 H 0.400 0.600 28 H 0.127 0.873 29 H -0.251 1.251 30 H -0.305 1.305 31 H 0.184 0.816 32 H 0.417 0.583 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 5.869 -2.172 7.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.182 4.182 3 Si 0.668 3.332 4 C -0.086 4.086 5 C 0.052 3.948 6 F -0.100 7.100 7 C -0.086 4.086 8 C -0.162 4.162 9 C 0.345 3.655 10 O -0.442 6.442 11 N -0.355 5.355 12 C 0.037 3.963 13 H 0.089 0.911 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.144 4.144 17 H 0.157 0.843 18 C 0.393 3.607 19 F -0.174 7.174 20 F -0.174 7.174 21 F -0.170 7.170 22 C -0.154 4.154 23 C -0.150 4.150 24 C 0.117 3.883 25 F -0.106 7.106 26 C -0.136 4.136 27 H 0.251 0.749 28 H 0.144 0.856 29 H -0.177 1.177 30 H -0.233 1.233 31 H 0.201 0.799 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.312 5.637 -2.604 7.037 hybrid contribution 0.116 -0.984 -0.057 0.993 sum 3.427 4.652 -2.662 6.362 Atomic orbital electron populations 1.86503 1.16331 1.81838 1.50955 1.25194 0.86028 1.10736 0.96218 0.94274 0.79081 0.73785 0.86102 1.20465 0.92201 0.97703 0.98206 1.17308 0.87917 0.96494 0.93085 1.91603 1.70927 1.71724 1.75723 1.21306 1.01550 0.93619 0.92146 1.19810 0.93450 1.04141 0.98789 1.18095 0.82847 0.80510 0.84018 1.90878 1.56830 1.41051 1.55414 1.45782 1.09720 1.51064 1.28901 1.21106 0.97059 0.91777 0.86348 0.91072 1.21807 1.01556 0.94949 0.97514 1.21531 0.95939 0.99618 0.98214 1.22603 1.01798 0.96997 0.92956 0.84316 1.21054 0.75187 0.77434 0.87002 1.93167 1.60480 1.96402 1.67348 1.93172 1.91936 1.39804 1.92497 1.93175 1.55253 1.79508 1.89089 1.21590 1.02916 0.91943 0.98920 1.21726 0.96425 0.99533 0.97323 1.17972 0.87042 0.92053 0.91197 1.91594 1.69922 1.72596 1.76538 1.20871 1.03028 0.96804 0.92893 0.74900 0.85568 1.17661 1.23312 0.79922 0.74404 0.92705 0.89143 0.90077 0.91407 0.88756 0.91020 0.88211 0.89056 0.80976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.57 11.63 -148.98 -1.73 0.84 16 2 C -0.07 0.35 2.96 71.24 0.21 0.56 16 3 Si 0.76 -3.75 30.81 68.60 2.11 -1.63 16 4 C -0.08 0.39 5.14 -19.78 -0.10 0.29 16 5 C 0.07 -0.35 6.65 22.33 0.15 -0.20 16 6 F -0.12 0.35 12.80 44.97 0.58 0.93 16 7 C -0.07 0.47 9.52 22.57 0.21 0.68 16 8 C -0.16 0.15 5.88 -20.06 -0.12 0.03 16 9 C 0.56 1.28 7.73 86.74 0.67 1.95 16 10 O -0.56 -6.80 15.00 -3.95 -0.06 -6.86 16 11 N -0.70 4.03 5.03 -445.56 -2.24 1.79 16 12 C 0.14 -0.70 2.45 44.99 0.11 -0.59 16 13 H 0.07 0.06 7.58 -2.39 -0.02 0.04 16 14 C -0.12 0.51 5.49 30.59 0.17 0.68 16 15 C -0.11 0.42 4.96 30.60 0.15 0.58 16 16 C -0.12 0.72 2.16 -10.79 -0.02 0.69 16 17 H 0.14 -1.38 8.14 -2.38 -0.02 -1.40 16 18 C 0.45 0.16 2.69 71.98 0.19 0.36 16 19 F -0.19 -0.71 16.28 44.97 0.73 0.02 16 20 F -0.19 -0.62 16.80 44.97 0.76 0.13 16 21 F -0.19 -0.36 16.80 44.97 0.76 0.40 16 22 C -0.12 0.88 4.96 30.61 0.15 1.03 16 23 C -0.11 1.19 5.40 30.61 0.17 1.35 16 24 C 0.14 0.26 7.28 22.67 0.17 0.42 16 25 F -0.13 -1.11 15.55 44.97 0.70 -0.41 16 26 C -0.12 0.36 9.20 22.27 0.20 0.57 16 27 H 0.40 -5.20 8.42 -74.06 -0.62 -5.82 16 28 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 29 H -0.25 0.22 5.26 99.48 0.52 0.74 16 30 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 31 H 0.18 -2.62 6.40 -2.91 -0.02 -2.64 16 32 H 0.42 -5.43 6.63 -92.70 -0.62 -6.04 16 33 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.09 -0.73 8.14 -2.39 -0.02 -0.74 16 35 H 0.08 -0.27 7.80 -2.39 -0.02 -0.28 16 36 H 0.07 -0.05 7.80 -2.39 -0.02 -0.07 16 37 H 0.09 -0.83 7.80 -2.39 -0.02 -0.85 16 38 H 0.07 -0.36 7.80 -2.39 -0.02 -0.38 16 39 H 0.10 -1.46 8.14 -2.39 -0.02 -1.48 16 40 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.17 -0.94 7.06 -2.91 -0.02 -0.96 16 Total: 0.00 -21.79 351.52 3.66 -18.13 By element: Atomic # 1 Polarization: -21.48 SS G_CDS: -0.26 Total: -21.74 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 2.31 Total: 8.41 kcal Atomic # 7 Polarization: 4.03 SS G_CDS: -2.24 Total: 1.79 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.79 Total: -6.02 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 3.52 Total: 1.07 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.11 Total: -1.63 kcal Total: -21.79 3.66 -18.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_12360598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.212 kcal (2) G-P(sol) polarization free energy of solvation -21.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds