Wall clock time and date at job start Tue Mar 9 2021 14:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86304 * 109.47088 * 2 1 4 4 C 1.50697 * 109.47706 * 120.00336 * 2 1 3 5 5 C 1.35085 * 126.07864 * 255.27149 * 4 2 1 6 6 N 1.35037 * 107.98198 * 180.19357 * 5 4 2 7 7 C 1.46499 * 125.93314 * 179.83653 * 6 5 4 8 8 C 1.50700 * 109.47257 * 124.71328 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27849 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.09007 * 109.47747 * 35.00142 * 11 10 8 13 13 C 1.53006 * 109.47036 * 154.99621 * 11 10 8 14 14 C 1.52998 * 109.47344 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46921 * 300.00334 * 14 13 11 16 16 H 1.08999 * 109.47539 * 299.99851 * 15 14 13 17 17 C 1.53007 * 109.47279 * 180.02562 * 15 14 13 18 18 F 1.39890 * 109.47168 * 59.99394 * 17 15 14 19 19 F 1.39895 * 109.47348 * 180.02562 * 17 15 14 20 20 F 1.39902 * 109.46701 * 299.99898 * 17 15 14 21 21 C 1.52999 * 109.47579 * 59.99872 * 15 14 13 22 22 C 1.52998 * 109.47099 * 300.00018 * 21 15 14 23 23 N 1.40078 * 108.13807 * 359.56934 * 6 5 4 24 24 C 1.31626 * 108.10257 * 0.26750 * 23 6 5 25 25 C 1.48423 * 126.02973 * 179.97438 * 24 23 6 26 26 C 1.39324 * 120.11630 * 144.74894 * 25 24 23 27 27 C 1.38026 * 119.87261 * 179.71491 * 26 25 24 28 28 C 1.38314 * 120.12234 * 0.55550 * 27 26 25 29 29 C 1.38319 * 120.24213 * 359.71885 * 28 27 26 30 30 C 1.38024 * 120.11840 * 359.97438 * 29 28 27 31 31 H 0.96705 * 114.00051 * 299.99554 * 1 2 3 32 32 H 1.09008 * 109.46800 * 240.00470 * 2 1 3 33 33 H 1.48501 * 110.00056 * 178.68273 * 3 2 1 34 34 H 1.48498 * 109.99876 * 300.00420 * 3 2 1 35 35 H 1.08001 * 126.00913 * 0.06057 * 5 4 2 36 36 H 1.09009 * 109.46700 * 4.71222 * 7 6 5 37 37 H 1.08998 * 109.46827 * 244.71796 * 7 6 5 38 38 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 39 39 H 1.09001 * 109.47081 * 299.99960 * 13 11 10 40 40 H 1.09002 * 109.47134 * 59.99771 * 13 11 10 41 41 H 1.09002 * 109.47122 * 59.99850 * 14 13 11 42 42 H 1.08998 * 109.47333 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47185 * 60.00042 * 21 15 14 44 44 H 1.09001 * 109.47276 * 180.02562 * 21 15 14 45 45 H 1.09002 * 109.47122 * 300.00063 * 22 21 15 46 46 H 1.08998 * 109.47333 * 179.97438 * 22 21 15 47 47 H 1.07991 * 120.06019 * 359.97103 * 26 25 24 48 48 H 1.08001 * 119.93746 * 180.27712 * 27 26 25 49 49 H 1.08005 * 119.87948 * 179.69858 * 28 27 26 50 50 H 1.07997 * 119.94130 * 180.02562 * 29 28 27 51 51 H 1.08002 * 120.05724 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4583 -0.1248 2.3277 6 7 2.7897 -1.0993 3.2018 7 6 3.3958 -0.9013 4.5208 8 6 2.5430 -1.5662 5.5704 9 8 1.5285 -2.1477 5.2484 10 7 2.9044 -1.5093 6.8676 11 6 2.0722 -2.1506 7.8885 12 1 1.6357 -3.0627 7.4814 13 6 2.9333 -2.4963 9.1051 14 6 2.0640 -3.1654 10.1717 15 6 0.9468 -2.2087 10.5929 16 1 1.3835 -1.2967 10.9998 17 6 0.0779 -2.8775 11.6600 18 9 0.8655 -3.1932 12.7721 19 9 -0.9440 -2.0030 12.0447 20 9 -0.4827 -4.0483 11.1382 21 6 0.0857 -1.8630 9.3764 22 6 0.9549 -1.1939 8.3098 23 7 2.4477 -2.3319 2.6310 24 6 1.9301 -2.1028 1.4427 25 6 1.4332 -3.1304 0.4940 26 6 0.3269 -2.8632 -0.3096 27 6 -0.1273 -3.8203 -1.1944 28 6 0.5066 -5.0469 -1.2758 29 6 1.6019 -5.3195 -0.4763 30 6 2.0684 -4.3674 0.4074 31 1 -0.3933 0.4417 0.7651 32 1 1.7922 -0.5138 -0.8901 33 1 3.5345 1.7703 0.0321 34 1 1.5613 2.4679 -1.2084 35 1 2.5930 0.9361 2.4784 36 1 3.4659 0.1658 4.7320 37 1 4.3935 -1.3401 4.5317 38 1 3.7156 -1.0440 7.1251 39 1 3.7295 -3.1775 8.8049 40 1 3.3698 -1.5843 9.5123 41 1 1.6272 -4.0774 9.7648 42 1 2.6774 -3.4113 11.0385 43 1 -0.3512 -2.7750 8.9695 44 1 -0.7100 -1.1810 9.6764 45 1 1.3918 -0.2819 8.7167 46 1 0.3416 -0.9480 7.4430 47 1 -0.1717 -1.9076 -0.2434 48 1 -0.9821 -3.6127 -1.8211 49 1 0.1449 -5.7948 -1.9661 50 1 2.0935 -6.2787 -0.5442 51 1 2.9234 -4.5814 1.0316 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:09 Heat of formation + Delta-G solvation = -118.550331 kcal Electronic energy + Delta-G solvation = -39061.907796 eV Core-core repulsion = 33514.069610 eV Total energy + Delta-G solvation = -5547.838186 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.160 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -51.14387 -48.63289 -48.62472 -42.46964 -41.06077 -39.82953 -39.23065 -37.72257 -35.55681 -34.75505 -32.44339 -32.00870 -31.94860 -31.60659 -31.19210 -28.68753 -26.50021 -25.79217 -24.22852 -23.96761 -23.50338 -22.87621 -21.71194 -21.48070 -21.23525 -20.85579 -19.38207 -19.28467 -18.74147 -18.61302 -18.27175 -17.76738 -17.47577 -16.76432 -16.70217 -16.35735 -16.09937 -15.89803 -15.78039 -15.66898 -15.43117 -15.39379 -15.15738 -15.01988 -14.98234 -14.79542 -14.78960 -14.77961 -14.53717 -14.40700 -14.26126 -14.13319 -13.92369 -13.78167 -13.63498 -13.52535 -13.33973 -13.19781 -12.50766 -12.45547 -12.37542 -12.23488 -12.14077 -12.09376 -11.88925 -11.63692 -11.54058 -11.45546 -11.21164 -10.63436 -10.23980 -10.11587 -9.89142 -9.73671 -9.27940 -4.96323 0.06195 0.45767 0.85634 1.32400 1.45126 1.53555 1.66969 1.75296 1.80467 2.07498 2.11825 2.79259 2.89122 2.93815 3.01846 3.38129 3.55911 3.59792 3.63189 3.65639 3.75091 3.89332 3.97096 4.01690 4.07740 4.09476 4.11374 4.16559 4.20054 4.22761 4.26631 4.33783 4.37986 4.44529 4.51968 4.57223 4.62274 4.71092 4.80750 4.84781 4.87145 4.95594 4.99639 5.04301 5.04853 5.16830 5.19008 5.23982 5.31484 5.46809 5.55464 5.60939 5.63816 5.96419 6.04689 6.52135 6.62655 6.87867 7.22831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.042 4.042 3 Si 0.805 3.195 4 C -0.270 4.270 5 C 0.080 3.920 6 N -0.359 5.359 7 C 0.109 3.891 8 C 0.496 3.504 9 O -0.565 6.565 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.055 0.945 13 C -0.111 4.111 14 C -0.117 4.117 15 C -0.122 4.122 16 H 0.143 0.857 17 C 0.446 3.554 18 F -0.189 7.189 19 F -0.192 7.192 20 F -0.194 7.194 21 C -0.116 4.116 22 C -0.114 4.114 23 N -0.297 5.297 24 C 0.106 3.894 25 C -0.039 4.039 26 C -0.113 4.113 27 C -0.132 4.132 28 C -0.118 4.118 29 C -0.132 4.132 30 C -0.113 4.113 31 H 0.393 0.607 32 H 0.089 0.911 33 H -0.280 1.280 34 H -0.303 1.303 35 H 0.230 0.770 36 H 0.184 0.816 37 H 0.139 0.861 38 H 0.423 0.577 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.158 0.842 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.141 0.859 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 8.560 3.905 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.152 4.152 3 Si 0.710 3.290 4 C -0.282 4.282 5 C -0.065 4.065 6 N -0.140 5.140 7 C -0.015 4.015 8 C 0.281 3.719 9 O -0.442 6.442 10 N -0.361 5.361 11 C 0.039 3.961 12 H 0.074 0.926 13 C -0.148 4.148 14 C -0.156 4.156 15 C -0.141 4.141 16 H 0.160 0.840 17 C 0.392 3.608 18 F -0.170 7.170 19 F -0.173 7.173 20 F -0.176 7.176 21 C -0.155 4.155 22 C -0.153 4.153 23 N -0.118 5.118 24 C -0.059 4.059 25 C -0.041 4.041 26 C -0.132 4.132 27 C -0.150 4.150 28 C -0.136 4.136 29 C -0.150 4.150 30 C -0.132 4.132 31 H 0.243 0.757 32 H 0.107 0.893 33 H -0.207 1.207 34 H -0.231 1.231 35 H 0.247 0.753 36 H 0.201 0.799 37 H 0.156 0.844 38 H 0.261 0.739 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.072 0.928 47 H 0.175 0.825 48 H 0.160 0.840 49 H 0.163 0.837 50 H 0.159 0.841 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.677 7.551 3.795 10.771 hybrid contribution -0.342 -0.748 -0.411 0.920 sum 6.335 6.803 3.384 9.893 Atomic orbital electron populations 1.86330 1.17964 1.81548 1.50440 1.24626 0.84604 1.11045 0.94888 0.94010 0.77073 0.72867 0.85066 1.20649 1.14681 0.92269 1.00594 1.22907 0.97811 0.96907 0.88888 1.48167 1.47845 1.03559 1.14478 1.22036 0.96759 1.06635 0.76062 1.21086 0.86041 0.80371 0.84410 1.90841 1.27767 1.43856 1.81704 1.45772 1.28518 1.56880 1.04910 1.20953 0.91576 0.95457 0.88100 0.92623 1.21691 0.97403 1.03016 0.92727 1.21586 0.95892 0.97594 1.00479 1.22594 0.96056 1.01983 0.93507 0.83960 1.21091 0.79717 0.76922 0.83060 1.93173 1.74065 1.93369 1.56411 1.93172 1.62530 1.69273 1.92325 1.93164 1.86701 1.51229 1.86511 1.21543 0.98136 1.01915 0.93865 1.21764 0.96554 0.99320 0.97648 1.77690 1.20594 1.04508 1.09041 1.20846 0.98912 0.93783 0.92322 1.18098 0.97098 0.92604 0.96325 1.22076 0.95093 1.01588 0.94400 1.21442 1.00806 0.93685 0.99022 1.21595 0.95447 0.97522 0.99081 1.21346 0.97560 0.99761 0.96353 1.21319 1.00080 0.93053 0.98745 0.75661 0.89305 1.20706 1.23107 0.75350 0.79873 0.84376 0.73902 0.89704 0.87785 0.91680 0.88869 0.92139 0.89929 0.88558 0.92806 0.82515 0.83994 0.83698 0.84112 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.57 10.10 -148.98 -1.50 -2.07 16 2 C -0.04 -0.05 2.00 71.23 0.14 0.10 16 3 Si 0.81 -3.60 30.75 68.60 2.11 -1.49 16 4 C -0.27 -0.97 5.34 -19.95 -0.11 -1.08 16 5 C 0.08 -0.23 9.96 83.47 0.83 0.60 16 6 N -0.36 -0.47 3.40 -351.90 -1.20 -1.67 16 7 C 0.11 -0.95 6.99 85.63 0.60 -0.35 16 8 C 0.50 -0.80 7.82 87.66 0.69 -0.12 16 9 O -0.56 -6.55 15.36 -3.04 -0.05 -6.60 16 10 N -0.71 6.30 5.08 -442.52 -2.25 4.06 16 11 C 0.14 -0.79 2.45 44.99 0.11 -0.67 16 12 H 0.06 0.15 7.58 -2.38 -0.02 0.13 16 13 C -0.11 1.16 5.39 30.60 0.16 1.33 16 14 C -0.12 0.81 4.96 30.59 0.15 0.96 16 15 C -0.12 0.70 2.16 -10.79 -0.02 0.68 16 16 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 17 C 0.45 0.31 2.69 71.98 0.19 0.51 16 18 F -0.19 -0.41 16.80 44.97 0.76 0.34 16 19 F -0.19 -0.61 16.80 44.97 0.76 0.15 16 20 F -0.19 -0.91 16.28 44.97 0.73 -0.18 16 21 C -0.12 0.43 4.96 30.59 0.15 0.59 16 22 C -0.11 0.64 5.49 30.59 0.17 0.80 16 23 N -0.30 -3.47 11.63 -48.15 -0.56 -4.03 16 24 C 0.11 1.18 6.74 42.53 0.29 1.47 16 25 C -0.04 -0.49 5.80 -20.04 -0.12 -0.60 16 26 C -0.11 -1.15 8.94 22.48 0.20 -0.95 16 27 C -0.13 -0.96 10.03 22.24 0.22 -0.74 16 28 C -0.12 -0.72 10.04 22.31 0.22 -0.49 16 29 C -0.13 -1.01 10.03 22.24 0.22 -0.79 16 30 C -0.11 -1.29 9.75 22.48 0.22 -1.07 16 31 H 0.39 -2.68 8.70 -74.05 -0.64 -3.33 16 32 H 0.09 0.45 7.84 -2.38 -0.02 0.44 16 33 H -0.28 0.11 7.11 99.48 0.71 0.82 16 34 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 35 H 0.23 -3.31 6.41 -2.91 -0.02 -3.33 16 36 H 0.18 -3.68 8.07 -2.38 -0.02 -3.70 16 37 H 0.14 -1.76 8.14 -2.39 -0.02 -1.78 16 38 H 0.42 -7.34 8.60 -92.71 -0.80 -8.14 16 39 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H 0.10 -1.61 8.14 -2.39 -0.02 -1.63 16 41 H 0.06 -0.21 7.80 -2.39 -0.02 -0.23 16 42 H 0.09 -0.75 7.80 -2.39 -0.02 -0.76 16 43 H 0.06 0.03 7.80 -2.39 -0.02 0.01 16 44 H 0.08 -0.31 7.80 -2.39 -0.02 -0.32 16 45 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.16 1.42 4.52 -2.92 -0.01 1.41 16 48 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 49 H 0.15 0.11 8.06 -2.91 -0.02 0.08 16 50 H 0.14 0.42 8.06 -2.91 -0.02 0.39 16 51 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 Total: 0.00 -36.22 425.99 2.73 -33.49 By element: Atomic # 1 Polarization: -21.77 SS G_CDS: -0.40 Total: -22.17 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.33 Total: 0.18 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -4.00 Total: -1.65 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.55 Total: -8.67 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 2.24 Total: 0.31 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 2.11 Total: -1.49 kcal Total: -36.22 2.73 -33.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.059 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds