Wall clock time and date at job start Tue Mar 9 2021 14:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39283 * 121.03049 * 2 1 4 4 C 1.46502 * 134.20457 * 359.97438 * 3 2 1 5 5 C 1.50697 * 126.59532 * 0.03048 * 4 3 2 6 6 O 1.42903 * 109.47266 * 74.99855 * 5 4 3 7 7 Si 1.86305 * 109.46978 * 194.99821 * 5 4 3 8 8 C 1.34177 * 106.80070 * 180.02562 * 4 3 2 9 9 N 1.36946 * 109.95408 * 359.97438 * 8 4 3 10 10 C 1.37150 * 110.11236 * 0.02562 * 9 8 4 11 11 N 1.32824 * 132.95930 * 179.97438 * 10 9 8 12 12 C 1.31313 * 121.88749 * 179.73313 * 11 10 9 13 13 C 1.39750 * 121.03271 * 180.02562 * 2 1 3 14 14 C 1.47665 * 120.45503 * 359.97438 * 13 2 1 15 15 O 1.21583 * 120.00024 * 354.23228 * 14 13 2 16 16 N 1.34778 * 120.00489 * 174.23736 * 14 13 2 17 17 C 1.46500 * 120.00273 * 179.97438 * 16 14 13 18 18 H 1.09008 * 109.46835 * 35.00135 * 17 16 14 19 19 C 1.52994 * 109.46870 * 155.00144 * 17 16 14 20 20 C 1.53003 * 109.47152 * 180.02562 * 19 17 16 21 21 C 1.53000 * 109.47345 * 300.00302 * 20 19 17 22 22 H 1.08999 * 109.46408 * 300.00036 * 21 20 19 23 23 C 1.52998 * 109.47433 * 179.97438 * 21 20 19 24 24 F 1.39905 * 109.46887 * 59.99643 * 23 21 20 25 25 F 1.39892 * 109.46915 * 179.97438 * 23 21 20 26 26 F 1.39903 * 109.47187 * 300.00158 * 23 21 20 27 27 C 1.53003 * 109.47058 * 59.99351 * 21 20 19 28 28 C 1.52998 * 109.47339 * 275.00259 * 17 16 14 29 29 H 1.09006 * 109.47131 * 263.75759 * 1 2 3 30 30 H 1.08996 * 109.47549 * 23.76089 * 1 2 3 31 31 H 1.09004 * 109.47126 * 143.76185 * 1 2 3 32 32 H 1.09006 * 109.47094 * 314.99491 * 5 4 3 33 33 H 0.96694 * 113.99509 * 59.99791 * 6 5 4 34 34 H 1.48504 * 109.99673 * 58.67869 * 7 5 4 35 35 H 1.48497 * 109.99869 * 179.97438 * 7 5 4 36 36 H 1.07997 * 125.01819 * 180.02562 * 8 4 3 37 37 H 0.97000 * 124.93937 * 180.02562 * 9 8 4 38 38 H 1.08001 * 119.30993 * 180.26599 * 12 11 10 39 39 H 0.97001 * 119.99632 * 359.72447 * 16 14 13 40 40 H 1.08999 * 109.47075 * 300.00112 * 19 17 16 41 41 H 1.08996 * 109.47723 * 60.00323 * 19 17 16 42 42 H 1.09008 * 109.46857 * 59.99804 * 20 19 17 43 43 H 1.08998 * 109.47577 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.46705 * 60.00631 * 27 21 20 45 45 H 1.09001 * 109.46905 * 179.97438 * 27 21 20 46 46 H 1.08997 * 109.47433 * 299.99975 * 28 17 16 47 47 H 1.09007 * 109.46978 * 60.00071 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6101 -0.0005 5 6 0.4527 3.1705 -0.0005 6 8 -0.1190 3.0244 1.3010 7 14 0.5071 4.9763 -0.4557 8 6 2.9948 3.3125 -0.0008 9 7 4.0669 2.4604 0.0000 10 6 3.6347 1.1588 0.0003 11 7 4.2720 -0.0066 0.0006 12 6 3.6266 -1.1502 0.0061 13 6 2.2274 -1.1975 -0.0005 14 6 1.5226 -2.4950 -0.0005 15 8 0.3119 -2.5292 0.1057 16 7 2.2212 -3.6416 -0.1183 17 6 1.5219 -4.9289 -0.1177 18 1 0.5600 -4.8201 -0.6190 19 6 2.3671 -5.9687 -0.8561 20 6 1.6365 -7.3130 -0.8561 21 6 1.4104 -7.7706 0.5862 22 1 2.3720 -7.8797 1.0877 23 6 0.6793 -9.1146 0.5863 24 9 1.4517 -10.0657 -0.0891 25 9 0.4731 -9.5332 1.9051 26 9 -0.5550 -8.9741 -0.0573 27 6 0.5652 -6.7307 1.3247 28 6 1.2963 -5.3862 1.3248 29 1 -0.3634 -0.1117 1.0216 30 1 -0.3634 0.9405 -0.4140 31 1 -0.3633 -0.8289 -0.6075 32 1 -0.1549 2.6308 -0.7270 33 1 0.3709 3.4801 1.9991 34 1 1.1288 5.1441 -1.7939 35 1 -0.8664 5.5406 -0.4599 36 1 3.0599 4.3905 -0.0007 37 1 4.9966 2.7372 0.0004 38 1 4.1869 -2.0735 0.0105 39 1 3.1867 -3.6142 -0.2070 40 1 2.5278 -5.6429 -1.8838 41 1 3.3289 -6.0775 -0.3549 42 1 0.6748 -7.2039 -1.3576 43 1 2.2384 -8.0537 -1.3825 44 1 -0.3964 -6.6217 0.8231 45 1 0.4037 -7.0570 2.3521 46 1 2.2581 -5.4950 1.8261 47 1 0.6941 -4.6453 1.8509 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:27 Heat of formation + Delta-G solvation = -156.121644 kcal Electronic energy + Delta-G solvation = -35836.077641 eV Core-core repulsion = 30570.374000 eV Total energy + Delta-G solvation = -5265.703641 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.11998 -48.61123 -48.59758 -42.84579 -41.23327 -39.56512 -38.59668 -37.68824 -35.79338 -34.91356 -32.30482 -31.92374 -31.79638 -30.44706 -28.93577 -26.74615 -26.19237 -24.67507 -23.99293 -23.94834 -22.78250 -21.70941 -21.21569 -20.61635 -19.41175 -19.28073 -19.23976 -18.75567 -18.55655 -17.70236 -17.54781 -17.13132 -16.66113 -16.53289 -16.17425 -15.81223 -15.65072 -15.53740 -15.47155 -15.26075 -15.12492 -15.01344 -14.94608 -14.76745 -14.76121 -14.62118 -14.48834 -14.19505 -14.02895 -13.80385 -13.73789 -13.60631 -13.51282 -13.27478 -13.26040 -13.07075 -12.46152 -12.31566 -12.20651 -12.06417 -11.98336 -11.61122 -11.41822 -11.19758 -11.13599 -10.51920 -10.19119 -10.12540 -9.61271 -9.10256 -4.98806 -0.34500 -0.06995 1.35212 1.43893 1.66673 1.75260 1.76689 1.81097 2.05237 2.06425 2.76042 2.81583 2.96350 3.04430 3.31831 3.47846 3.59682 3.62612 3.63546 3.66966 3.73406 3.77321 3.91772 4.08473 4.11785 4.15630 4.24206 4.26562 4.29543 4.34437 4.35307 4.40635 4.57435 4.61366 4.69381 4.73137 4.78381 4.89337 4.98684 4.99568 5.06850 5.07812 5.16149 5.21920 5.24642 5.26469 5.38786 5.51072 5.74274 6.24316 6.49430 6.83601 6.88819 7.18726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.059 3.941 3 C -0.169 4.169 4 C -0.207 4.207 5 C -0.050 4.050 6 O -0.557 6.557 7 Si 0.803 3.197 8 C 0.096 3.904 9 N -0.560 5.560 10 C 0.288 3.712 11 N -0.516 5.516 12 C 0.181 3.819 13 C -0.241 4.241 14 C 0.571 3.429 15 O -0.565 6.565 16 N -0.708 5.708 17 C 0.144 3.856 18 H 0.069 0.931 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.124 4.124 22 H 0.139 0.861 23 C 0.447 3.553 24 F -0.189 7.189 25 F -0.192 7.192 26 F -0.192 7.192 27 C -0.114 4.114 28 C -0.118 4.118 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.394 0.606 34 H -0.280 1.280 35 H -0.306 1.306 36 H 0.231 0.769 37 H 0.439 0.561 38 H 0.197 0.803 39 H 0.414 0.586 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 5.628 0.599 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.214 4.214 5 C -0.158 4.158 6 O -0.365 6.365 7 Si 0.708 3.292 8 C -0.031 4.031 9 N -0.167 5.167 10 C 0.054 3.946 11 N -0.229 5.229 12 C 0.012 3.988 13 C -0.248 4.248 14 C 0.359 3.641 15 O -0.446 6.446 16 N -0.360 5.360 17 C 0.039 3.961 18 H 0.088 0.912 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.143 4.143 22 H 0.157 0.843 23 C 0.394 3.606 24 F -0.171 7.171 25 F -0.174 7.174 26 F -0.174 7.174 27 C -0.152 4.152 28 C -0.157 4.157 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.244 0.756 34 H -0.207 1.207 35 H -0.234 1.234 36 H 0.247 0.753 37 H 0.281 0.719 38 H 0.213 0.787 39 H 0.252 0.748 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.891 5.979 -0.221 9.903 hybrid contribution -0.762 -1.124 -0.189 1.371 sum 7.128 4.856 -0.409 8.635 Atomic orbital electron populations 1.20973 0.89640 1.02886 1.03131 1.20057 0.96868 0.90392 0.87616 1.19788 0.93415 0.94500 1.09869 1.20803 0.96327 0.90360 1.13939 1.24783 0.89940 1.12371 0.88748 1.86496 1.54446 1.78650 1.16931 0.94079 0.80607 0.72591 0.81956 1.22387 0.83659 0.97360 0.99703 1.41622 1.10700 1.01681 1.62668 1.18775 0.89413 0.86950 0.99436 1.66524 1.40832 0.96489 1.19061 1.22989 0.89589 0.95367 0.90858 1.20520 0.95519 0.93330 1.15465 1.17996 0.86448 0.84039 0.75636 1.90753 1.15151 1.87536 1.51134 1.45787 1.11388 1.04695 1.74138 1.21048 0.96702 0.82050 0.96282 0.91233 1.21709 0.99294 0.92043 1.02031 1.21574 1.02608 0.98245 0.92890 1.22599 1.01586 0.88462 1.01682 0.84326 1.21047 0.77762 0.88973 0.72866 1.93176 1.75018 1.68255 1.80604 1.93170 1.95271 1.91955 1.36966 1.93164 1.46185 1.95979 1.82067 1.21540 0.98604 0.93884 1.01215 1.21805 1.01748 0.95422 0.96716 0.90875 0.91297 0.90053 0.88765 0.75633 1.20694 1.23435 0.75282 0.71942 0.78694 0.74759 0.89455 0.88262 0.91103 0.88861 0.91439 0.90062 0.89258 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 8.69 71.24 0.62 -0.39 16 2 C 0.06 0.46 5.98 -19.25 -0.12 0.35 16 3 C -0.17 -0.92 6.16 -20.19 -0.12 -1.04 16 4 C -0.21 0.08 5.57 -18.64 -0.10 -0.02 16 5 C -0.05 0.04 2.06 71.24 0.15 0.18 16 6 O -0.56 -0.28 12.88 -148.98 -1.92 -2.20 16 7 Si 0.80 -4.34 30.77 68.60 2.11 -2.23 16 8 C 0.10 -0.67 10.44 82.97 0.87 0.20 16 9 N -0.56 2.38 6.04 -192.26 -1.16 1.22 16 10 C 0.29 1.00 8.42 134.02 1.13 2.13 16 11 N -0.52 -1.99 10.37 -191.75 -1.99 -3.98 16 12 C 0.18 0.12 10.67 85.20 0.91 1.03 16 13 C -0.24 -1.15 5.89 -19.99 -0.12 -1.27 16 14 C 0.57 2.85 7.68 86.73 0.67 3.52 16 15 O -0.57 -7.00 13.15 -3.98 -0.05 -7.05 16 16 N -0.71 2.16 5.03 -445.57 -2.24 -0.09 16 17 C 0.14 -0.44 2.45 44.99 0.11 -0.33 16 18 H 0.07 0.17 7.58 -2.38 -0.02 0.15 16 19 C -0.11 0.96 5.39 30.59 0.16 1.12 16 20 C -0.12 0.70 4.96 30.60 0.15 0.85 16 21 C -0.12 0.57 2.17 -10.79 -0.02 0.54 16 22 H 0.14 -1.21 8.14 -2.39 -0.02 -1.23 16 23 C 0.45 0.59 2.69 71.98 0.19 0.78 16 24 F -0.19 -0.54 16.80 44.97 0.76 0.22 16 25 F -0.19 -0.77 16.80 44.97 0.76 -0.01 16 26 F -0.19 -0.89 16.28 44.97 0.73 -0.16 16 27 C -0.11 0.30 4.96 30.61 0.15 0.45 16 28 C -0.12 0.34 5.50 30.61 0.17 0.51 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.54 5.06 -2.39 -0.01 0.53 16 31 H 0.08 0.96 5.94 -2.39 -0.01 0.94 16 32 H 0.10 0.27 6.05 -2.38 -0.01 0.25 16 33 H 0.39 -3.27 8.70 -74.06 -0.64 -3.91 16 34 H -0.28 0.32 7.11 99.48 0.71 1.03 16 35 H -0.31 -1.09 7.11 99.48 0.71 -0.38 16 36 H 0.23 -3.89 6.36 -2.91 -0.02 -3.91 16 37 H 0.44 -4.36 8.96 -92.71 -0.83 -5.19 16 38 H 0.20 -1.58 6.43 -2.91 -0.02 -1.60 16 39 H 0.41 -3.98 6.68 -92.71 -0.62 -4.60 16 40 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.10 -1.25 8.14 -2.39 -0.02 -1.26 16 42 H 0.07 -0.25 7.80 -2.38 -0.02 -0.27 16 43 H 0.09 -0.67 7.80 -2.39 -0.02 -0.69 16 44 H 0.07 0.02 7.80 -2.38 -0.02 0.00 16 45 H 0.08 -0.19 7.80 -2.39 -0.02 -0.21 16 46 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 Total: 0.00 -27.31 383.81 0.82 -26.49 By element: Atomic # 1 Polarization: -19.86 SS G_CDS: -0.97 Total: -20.83 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 4.79 Total: 8.61 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: -5.39 Total: -2.84 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -1.97 Total: -9.26 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 2.24 Total: 0.05 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.11 Total: -2.23 kcal Total: -27.31 0.82 -26.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.628 kcal (2) G-P(sol) polarization free energy of solvation -27.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds