Wall clock time and date at job start Tue Mar 9 2021 14:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.38510 * 119.80601 * 119.99390 * 4 2 1 6 6 C 1.37830 * 120.29924 * 179.97438 * 5 4 2 7 7 C 1.39666 * 119.91201 * 0.02562 * 6 5 4 8 8 C 1.47533 * 120.19485 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00172 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99849 * 0.02562 * 8 7 6 11 11 C 1.46493 * 119.99815 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.47572 * 324.99382 * 11 10 8 13 13 C 1.52996 * 109.47558 * 85.00170 * 11 10 8 14 14 C 1.52994 * 109.47478 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47298 * 299.99432 * 14 13 11 16 16 H 1.09003 * 109.47340 * 300.00454 * 15 14 13 17 17 C 1.52994 * 109.47298 * 179.97438 * 15 14 13 18 18 F 1.39899 * 109.47396 * 300.00504 * 17 15 14 19 19 F 1.39899 * 109.47029 * 60.00361 * 17 15 14 20 20 F 1.39900 * 109.47063 * 180.02562 * 17 15 14 21 21 C 1.53001 * 109.46767 * 60.00242 * 15 14 13 22 22 C 1.53004 * 109.47009 * 299.99927 * 21 15 14 23 23 C 1.40179 * 119.61473 * 0.02562 * 7 6 5 24 24 O 1.35654 * 120.14770 * 180.02562 * 23 7 6 25 25 C 1.38100 * 119.80519 * 299.72531 * 4 2 1 26 26 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 27 27 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 28 28 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 29 29 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 30 30 H 1.08005 * 119.84695 * 359.96465 * 5 4 2 31 31 H 1.08003 * 120.03970 * 180.02562 * 6 5 4 32 32 H 0.97001 * 119.99994 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47212 * 299.99976 * 13 11 10 34 34 H 1.09003 * 109.46928 * 59.99509 * 13 11 10 35 35 H 1.09003 * 109.47301 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.47479 * 59.99883 * 14 13 11 37 37 H 1.09001 * 109.47586 * 179.97438 * 21 15 14 38 38 H 1.09000 * 109.47261 * 59.99560 * 21 15 14 39 39 H 1.08994 * 109.47485 * 299.99943 * 22 21 15 40 40 H 1.09003 * 109.47296 * 179.97438 * 22 21 15 41 41 H 0.96699 * 113.99938 * 90.00295 * 24 23 7 42 42 H 1.07990 * 119.95764 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7272 -0.0332 -2.1397 6 6 3.1926 -0.6731 -3.2682 7 6 2.8604 -2.0102 -3.4977 8 6 3.3547 -2.7010 -4.7039 9 8 3.0630 -3.8649 -4.9004 10 7 4.1296 -2.0420 -5.5881 11 6 4.6208 -2.7282 -6.7855 12 1 4.8280 -3.7714 -6.5473 13 6 3.5597 -2.6572 -7.8855 14 6 4.0730 -3.3733 -9.1363 15 6 5.3563 -2.6959 -9.6214 16 1 5.1488 -1.6526 -9.8593 17 6 5.8699 -3.4124 -10.8718 18 9 6.1363 -4.7513 -10.5658 19 9 4.8998 -3.3480 -11.8777 20 9 7.0436 -2.7933 -11.3149 21 6 6.4175 -2.7668 -8.5215 22 6 5.9041 -2.0507 -7.2706 23 6 2.0538 -2.6916 -2.5757 24 8 1.7250 -3.9905 -2.7876 25 6 1.5998 -2.0341 -1.4423 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5138 0.8899 28 1 1.5616 2.4678 1.2086 29 1 3.5346 1.7703 -0.0322 30 1 2.9842 1.0009 -1.9635 31 1 3.8133 -0.1413 -3.9742 32 1 4.3626 -1.1135 -5.4311 33 1 2.6453 -3.1394 -7.5399 34 1 3.3526 -1.6139 -8.1237 35 1 3.3169 -3.3232 -9.9198 36 1 4.2805 -4.4166 -8.8984 37 1 7.3319 -2.2847 -8.8671 38 1 6.6249 -3.8101 -8.2834 39 1 5.6967 -1.0075 -7.5085 40 1 6.6599 -2.1016 -6.4868 41 1 2.3505 -4.6218 -2.4065 42 1 0.9821 -2.5565 -0.7269 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:08 Heat of formation + Delta-G solvation = -244.498438 kcal Electronic energy + Delta-G solvation = -30545.191833 eV Core-core repulsion = 25655.353036 eV Total energy + Delta-G solvation = -4889.838797 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11891 -48.61009 -48.59639 -41.72147 -40.44178 -39.12145 -38.36979 -37.13638 -35.51821 -33.08760 -31.92897 -31.16928 -31.09750 -27.64576 -26.24956 -24.02915 -23.84913 -23.67276 -22.62584 -21.52251 -21.20226 -19.56460 -19.27302 -19.23892 -18.68311 -18.53870 -18.20536 -17.52572 -16.65520 -16.42161 -16.22072 -16.17440 -15.87390 -15.65457 -15.59721 -15.24039 -15.14852 -15.09615 -14.94868 -14.76669 -14.76519 -14.74267 -14.53211 -14.35681 -13.82029 -13.69657 -13.51625 -13.30480 -13.24259 -12.84883 -12.48656 -12.29329 -12.22020 -12.17766 -12.04107 -11.65067 -11.61299 -11.42700 -10.90175 -10.51194 -10.20213 -9.99138 -9.75036 -4.96614 -0.39852 0.16046 1.30026 1.65129 1.74487 1.76713 2.01007 2.05941 2.58891 2.81691 2.96254 3.04312 3.14156 3.44938 3.54039 3.60617 3.66554 3.71314 3.80231 3.91553 4.05562 4.11689 4.12636 4.24042 4.28290 4.29095 4.39786 4.40487 4.58263 4.60420 4.72691 4.77638 4.88590 4.98212 5.04028 5.05839 5.07253 5.14320 5.22158 5.25765 5.26397 5.47939 5.61310 6.51203 6.70445 6.73732 7.20524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.087 4.087 3 Si 0.791 3.209 4 C -0.073 4.073 5 C -0.132 4.132 6 C -0.051 4.051 7 C -0.180 4.180 8 C 0.556 3.444 9 O -0.564 6.564 10 N -0.707 5.707 11 C 0.143 3.857 12 H 0.066 0.934 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.124 4.124 16 H 0.140 0.860 17 C 0.447 3.553 18 F -0.193 7.193 19 F -0.192 7.192 20 F -0.189 7.189 21 C -0.116 4.116 22 C -0.112 4.112 23 C 0.150 3.850 24 O -0.499 6.499 25 C -0.142 4.142 26 H 0.397 0.603 27 H 0.109 0.891 28 H -0.305 1.305 29 H -0.272 1.272 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.416 0.584 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.406 0.594 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 8.831 0.575 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.196 4.196 3 Si 0.696 3.304 4 C -0.074 4.074 5 C -0.149 4.149 6 C -0.069 4.069 7 C -0.183 4.183 8 C 0.344 3.656 9 O -0.443 6.443 10 N -0.360 5.360 11 C 0.038 3.962 12 H 0.084 0.916 13 C -0.157 4.157 14 C -0.153 4.153 15 C -0.143 4.143 16 H 0.158 0.842 17 C 0.393 3.607 18 F -0.175 7.175 19 F -0.174 7.174 20 F -0.170 7.170 21 C -0.154 4.154 22 C -0.149 4.149 23 C 0.104 3.896 24 O -0.312 6.312 25 C -0.161 4.161 26 H 0.247 0.753 27 H 0.126 0.874 28 H -0.234 1.234 29 H -0.198 1.198 30 H 0.181 0.819 31 H 0.190 0.810 32 H 0.255 0.745 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.265 0.735 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.860 8.469 1.056 9.001 hybrid contribution 0.315 -1.376 0.309 1.445 sum 3.174 7.093 1.366 7.890 Atomic orbital electron populations 1.86498 1.17204 1.82249 1.50543 1.25462 0.85436 1.11848 0.96845 0.93582 0.78021 0.73907 0.84926 1.20578 0.96414 0.93582 0.96835 1.21256 0.98525 1.01106 0.94014 1.21526 0.96742 0.91375 0.97266 1.20463 1.03571 0.96908 0.97385 1.18310 0.78252 0.85949 0.83112 1.90818 1.58191 1.18169 1.77142 1.45801 1.51450 1.16373 1.22399 1.21032 0.94014 0.97319 0.83793 0.91556 1.21792 0.98102 1.02133 0.93671 1.21527 0.95360 0.99900 0.98507 1.22597 0.98197 1.02761 0.90718 0.84192 1.21055 0.75282 0.77565 0.86775 1.93163 1.94104 1.37156 1.93028 1.93173 1.63431 1.96210 1.64569 1.93176 1.50223 1.82510 1.91093 1.21582 0.97410 1.02757 0.93630 1.21707 0.95317 1.00873 0.97029 1.18783 0.92995 0.85649 0.92178 1.84721 1.52636 1.13482 1.80339 1.21328 1.02073 0.95678 0.97008 0.75319 0.87355 1.23389 1.19834 0.81886 0.81010 0.74529 0.93009 0.89108 0.90100 0.91597 0.88751 0.91211 0.88107 0.89294 0.73466 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.80 12.77 -148.98 -1.90 -1.10 16 2 C -0.09 0.31 2.81 71.24 0.20 0.51 16 3 Si 0.79 -5.29 29.77 68.60 2.04 -3.25 16 4 C -0.07 0.23 5.39 -19.83 -0.11 0.12 16 5 C -0.13 0.98 8.65 22.24 0.19 1.18 16 6 C -0.05 0.37 9.54 22.52 0.21 0.59 16 7 C -0.18 -0.09 5.89 -20.01 -0.12 -0.21 16 8 C 0.56 1.85 7.73 86.69 0.67 2.52 16 9 O -0.56 -7.08 14.82 16.95 0.25 -6.83 16 10 N -0.71 3.49 5.03 -445.72 -2.24 1.25 16 11 C 0.14 -0.59 2.45 44.99 0.11 -0.48 16 12 H 0.07 0.13 7.58 -2.39 -0.02 0.11 16 13 C -0.12 0.41 5.49 30.59 0.17 0.58 16 14 C -0.11 0.35 4.96 30.59 0.15 0.51 16 15 C -0.12 0.67 2.17 -10.80 -0.02 0.65 16 16 H 0.14 -1.38 8.14 -2.39 -0.02 -1.40 16 17 C 0.45 0.27 2.69 71.98 0.19 0.46 16 18 F -0.19 -0.78 16.28 44.97 0.73 -0.05 16 19 F -0.19 -0.65 16.80 44.97 0.76 0.10 16 20 F -0.19 -0.38 16.80 44.97 0.76 0.38 16 21 C -0.12 0.83 4.96 30.60 0.15 0.99 16 22 C -0.11 1.12 5.39 30.60 0.16 1.29 16 23 C 0.15 0.62 6.72 22.85 0.15 0.77 16 24 O -0.50 -3.76 11.58 -68.77 -0.80 -4.56 16 25 C -0.14 -0.21 9.53 22.34 0.21 0.00 16 26 H 0.40 -3.81 8.70 -74.05 -0.64 -4.45 16 27 H 0.11 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H -0.31 -0.68 7.11 99.48 0.71 0.03 16 29 H -0.27 1.04 7.11 99.48 0.71 1.74 16 30 H 0.16 -2.15 4.85 -2.91 -0.01 -2.17 16 31 H 0.17 -2.68 6.40 -2.91 -0.02 -2.70 16 32 H 0.42 -5.16 6.63 -92.71 -0.61 -5.78 16 33 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.08 -0.22 7.80 -2.39 -0.02 -0.24 16 36 H 0.07 0.00 7.80 -2.39 -0.02 -0.02 16 37 H 0.09 -0.80 7.80 -2.39 -0.02 -0.82 16 38 H 0.07 -0.31 7.80 -2.39 -0.02 -0.33 16 39 H 0.10 -1.46 8.14 -2.39 -0.02 -1.47 16 40 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H 0.41 0.34 9.06 -74.06 -0.67 -0.33 16 42 H 0.13 0.33 8.06 -2.92 -0.02 0.31 16 Total: 0.00 -25.08 353.56 1.15 -23.92 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: -0.78 Total: -19.32 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 2.34 Total: 9.45 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -2.24 Total: 1.25 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -2.45 Total: -12.49 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 2.24 Total: 0.43 kcal Atomic # 14 Polarization: -5.29 SS G_CDS: 2.04 Total: -3.25 kcal Total: -25.08 1.15 -23.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.574 kcal (2) G-P(sol) polarization free energy of solvation -25.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds