Wall clock time and date at job start Tue Mar 9 2021 14:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.34849 * 125.89155 * 245.02927 * 4 2 1 6 6 C 1.40885 * 107.42015 * 180.02562 * 5 4 2 7 7 C 1.34856 * 107.41313 * 359.97438 * 6 5 4 8 8 C 1.50705 * 125.88797 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47151 * 84.97772 * 8 7 6 10 10 O 1.21282 * 119.99884 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00102 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47312 * 324.99627 * 12 11 9 14 14 C 1.52999 * 109.47066 * 85.00151 * 12 11 9 15 15 C 1.52998 * 109.46800 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47194 * 299.99408 * 15 14 12 17 17 H 1.09006 * 109.47361 * 300.00307 * 16 15 14 18 18 C 1.53007 * 109.47311 * 180.02562 * 16 15 14 19 19 F 1.39907 * 109.46815 * 300.00356 * 18 16 15 20 20 F 1.39900 * 109.46980 * 59.99788 * 18 16 15 21 21 F 1.39897 * 109.47085 * 180.02562 * 18 16 15 22 22 C 1.52999 * 109.47135 * 60.00522 * 16 15 14 23 23 C 1.53004 * 109.46906 * 204.99964 * 12 11 9 24 24 N 1.36335 * 108.22112 * 359.73935 * 7 6 5 25 25 H 0.96708 * 114.00101 * 299.99304 * 1 2 3 26 26 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 27 27 H 1.48493 * 110.00101 * 300.00094 * 3 2 1 28 28 H 1.48502 * 109.99925 * 61.32089 * 3 2 1 29 29 H 1.08002 * 126.28871 * 0.02562 * 5 4 2 30 30 H 1.08001 * 126.29542 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46800 * 204.97822 * 8 7 6 32 32 H 1.09008 * 109.47081 * 324.97637 * 8 7 6 33 33 H 0.97001 * 119.99630 * 359.97438 * 11 9 8 34 34 H 1.08998 * 109.46735 * 299.99743 * 14 12 11 35 35 H 1.08992 * 109.47501 * 59.99909 * 14 12 11 36 36 H 1.09008 * 109.47017 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.47848 * 59.99946 * 15 14 12 38 38 H 1.09001 * 109.47587 * 180.02562 * 22 16 15 39 39 H 1.08998 * 109.47190 * 59.99340 * 22 16 15 40 40 H 1.09006 * 109.47268 * 299.99796 * 23 12 11 41 41 H 1.08998 * 109.47297 * 60.00212 * 23 12 11 42 42 H 0.96998 * 125.63907 * 180.25880 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6297 -0.1486 2.2379 6 6 2.8981 -1.1605 3.1808 7 6 2.3529 -2.3021 2.7137 8 6 2.3939 -3.6448 3.3969 9 6 1.2625 -3.7388 4.3880 10 8 0.4985 -2.8071 4.5262 11 7 1.0997 -4.8582 5.1206 12 6 -0.0005 -4.9498 6.0837 13 1 -0.1724 -3.9718 6.5330 14 6 -1.2700 -5.4114 5.3652 15 6 -2.4191 -5.5064 6.3709 16 6 -2.0575 -6.5132 7.4648 17 1 -1.8857 -7.4916 7.0158 18 6 -3.2069 -6.6088 8.4702 19 9 -3.4279 -5.3532 9.0465 20 9 -4.3675 -7.0309 7.8129 21 9 -2.8761 -7.5289 9.4707 22 6 -0.7880 -6.0518 8.1833 23 6 0.3615 -5.9569 7.1772 24 7 1.7529 -2.0308 1.5199 25 1 -0.3934 0.4416 0.7652 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 -1.2084 28 1 1.5878 2.4585 1.2243 29 1 2.9284 0.8869 2.3090 30 1 3.4400 -1.0433 4.1076 31 1 2.2915 -4.4344 2.6526 32 1 3.3443 -3.7582 3.9186 33 1 1.7106 -5.6035 5.0097 34 1 -1.5278 -4.6939 4.5862 35 1 -1.0981 -6.3894 4.9159 36 1 -3.3235 -5.8357 5.8592 37 1 -2.5910 -4.5282 6.8199 38 1 -0.5301 -6.7692 8.9623 39 1 -0.9598 -5.0735 8.6321 40 1 0.5335 -6.9351 6.7278 41 1 1.2659 -5.6282 7.6890 42 1 1.2798 -2.6717 0.9665 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:29 Heat of formation + Delta-G solvation = -192.077206 kcal Electronic energy + Delta-G solvation = -28819.242562 eV Core-core repulsion = 24157.621723 eV Total energy + Delta-G solvation = -4661.620840 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.15316 -48.64583 -48.63033 -42.33091 -40.96395 -39.23243 -37.85781 -35.49360 -33.27091 -31.95694 -31.92979 -31.43253 -29.27057 -26.50554 -25.10072 -23.99426 -23.01256 -21.71528 -21.39453 -21.31017 -20.87064 -19.39051 -19.29485 -19.02375 -18.63648 -18.04483 -17.55318 -16.78844 -16.39685 -16.35689 -15.86075 -15.68255 -15.41090 -15.23600 -15.13433 -15.00795 -14.92641 -14.80156 -14.79452 -14.62716 -14.53210 -14.29176 -14.08739 -13.86091 -13.75714 -13.59411 -13.37161 -13.30354 -12.76960 -12.49430 -12.25068 -12.19026 -12.09128 -11.85460 -11.63281 -11.45011 -10.93100 -10.82488 -10.07358 -9.79322 -8.96317 -4.88271 1.09509 1.29904 1.64778 1.67271 1.73494 1.85757 1.94523 2.31000 2.51303 2.79434 2.92738 3.00696 3.37354 3.56782 3.63325 3.70773 3.81608 3.89210 3.97100 4.08945 4.12847 4.20651 4.24881 4.26864 4.36526 4.42378 4.51103 4.57663 4.65818 4.69938 4.81169 4.87017 4.94063 5.02679 5.03896 5.18500 5.24656 5.26534 5.29766 5.51811 5.99121 6.13605 6.37596 6.56379 6.68929 7.30453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.062 4.062 3 Si 0.799 3.201 4 C -0.018 4.018 5 C -0.203 4.203 6 C -0.202 4.202 7 C 0.036 3.964 8 C -0.067 4.067 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.713 5.713 12 C 0.142 3.858 13 H 0.062 0.938 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.123 4.123 17 H 0.139 0.861 18 C 0.447 3.553 19 F -0.193 7.193 20 F -0.192 7.192 21 F -0.188 7.188 22 C -0.117 4.117 23 C -0.111 4.111 24 N -0.536 5.536 25 H 0.385 0.615 26 H 0.127 0.873 27 H -0.297 1.297 28 H -0.292 1.292 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.420 0.580 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -6.060 -1.313 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.171 4.171 3 Si 0.703 3.297 4 C -0.131 4.131 5 C -0.228 4.228 6 C -0.226 4.226 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.297 3.703 10 O -0.457 6.457 11 N -0.365 5.365 12 C 0.037 3.963 13 H 0.080 0.920 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.142 4.142 17 H 0.157 0.843 18 C 0.393 3.607 19 F -0.175 7.175 20 F -0.174 7.174 21 F -0.170 7.170 22 C -0.155 4.155 23 C -0.149 4.149 24 N -0.132 5.132 25 H 0.234 0.766 26 H 0.145 0.855 27 H -0.225 1.225 28 H -0.218 1.218 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.257 0.743 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.760 -4.999 -1.827 8.604 hybrid contribution -1.807 -0.470 0.638 1.973 sum 4.953 -5.469 -1.189 7.474 Atomic orbital electron populations 1.86537 1.18951 1.80583 1.50151 1.24995 0.83041 1.12284 0.96765 0.93417 0.90040 0.70226 0.76012 1.20876 1.07194 0.84893 1.00154 1.20908 1.05973 1.00200 0.95684 1.20846 1.07959 0.92414 1.01403 1.19949 1.02231 0.97005 0.88660 1.20272 0.99368 0.93546 0.97537 1.21056 0.85843 0.81859 0.81555 1.90763 1.47386 1.39394 1.68162 1.45896 1.32092 1.17997 1.40547 1.20960 0.86260 0.99744 0.89310 0.92019 1.21775 0.93738 1.02589 0.97420 1.21536 0.99606 0.98556 0.95683 1.22593 0.91996 1.05319 0.94329 0.84278 1.21064 0.84670 0.72981 0.81992 1.93165 1.95535 1.42446 1.86314 1.93172 1.53248 1.90173 1.80791 1.93176 1.92330 1.67324 1.64142 1.21598 0.92287 1.03024 0.98551 1.21704 0.98164 1.00077 0.94926 1.41887 1.43552 1.09274 1.18460 0.76562 0.85510 1.22508 1.21827 0.83485 0.84203 0.85235 0.83707 0.74256 0.93070 0.89197 0.90200 0.91753 0.88837 0.91306 0.88280 0.89341 0.74365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.77 12.88 -148.98 -1.92 -4.69 16 2 C -0.06 -0.08 3.08 71.24 0.22 0.14 16 3 Si 0.80 -0.12 30.60 68.60 2.10 1.98 16 4 C -0.02 -0.06 6.50 41.08 0.27 0.21 16 5 C -0.20 -0.91 9.37 22.14 0.21 -0.70 16 6 C -0.20 -0.92 10.77 22.14 0.24 -0.68 16 7 C 0.04 0.05 5.66 41.08 0.23 0.29 16 8 C -0.07 0.43 6.24 29.10 0.18 0.61 16 9 C 0.51 -0.24 7.79 87.66 0.68 0.44 16 10 O -0.58 -6.37 15.70 -3.04 -0.05 -6.42 16 11 N -0.71 5.01 5.08 -442.54 -2.25 2.77 16 12 C 0.14 -0.64 2.45 44.99 0.11 -0.53 16 13 H 0.06 0.14 7.58 -2.39 -0.02 0.12 16 14 C -0.12 0.44 5.49 30.59 0.17 0.61 16 15 C -0.12 0.32 4.96 30.59 0.15 0.47 16 16 C -0.12 0.61 2.16 -10.79 -0.02 0.59 16 17 H 0.14 -1.29 8.14 -2.38 -0.02 -1.31 16 18 C 0.45 0.49 2.69 71.98 0.19 0.68 16 19 F -0.19 -0.89 16.28 44.97 0.73 -0.16 16 20 F -0.19 -0.73 16.80 44.97 0.76 0.02 16 21 F -0.19 -0.47 16.80 44.97 0.76 0.29 16 22 C -0.12 0.77 4.96 30.61 0.15 0.92 16 23 C -0.11 1.08 5.40 30.61 0.17 1.25 16 24 N -0.54 -0.92 6.07 -171.11 -1.04 -1.96 16 25 H 0.39 0.57 8.70 -74.05 -0.64 -0.07 16 26 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H -0.30 -1.86 7.11 99.48 0.71 -1.16 16 28 H -0.29 -1.58 7.11 99.48 0.71 -0.87 16 29 H 0.15 0.26 6.24 -2.91 -0.02 0.24 16 30 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 31 H 0.13 -1.59 8.14 -2.39 -0.02 -1.61 16 32 H 0.15 -1.70 8.14 -2.38 -0.02 -1.72 16 33 H 0.42 -6.04 8.60 -92.71 -0.80 -6.84 16 34 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.08 -0.20 7.80 -2.38 -0.02 -0.21 16 37 H 0.06 0.04 7.80 -2.39 -0.02 0.02 16 38 H 0.09 -0.73 7.80 -2.39 -0.02 -0.75 16 39 H 0.07 -0.25 7.80 -2.39 -0.02 -0.27 16 40 H 0.10 -1.37 8.14 -2.38 -0.02 -1.39 16 41 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.42 -0.75 8.96 -92.71 -0.83 -1.58 16 Total: 0.00 -23.65 356.24 0.89 -22.77 By element: Atomic # 1 Polarization: -17.75 SS G_CDS: -1.15 Total: -18.90 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 2.95 Total: 4.30 kcal Atomic # 7 Polarization: 4.09 SS G_CDS: -3.29 Total: 0.80 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.97 Total: -11.11 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 2.24 Total: 0.16 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: 2.10 Total: 1.98 kcal Total: -23.65 0.89 -22.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.311 kcal (2) G-P(sol) polarization free energy of solvation -23.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds