Wall clock time and date at job start Tue Mar 9 2021 14:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86298 * 109.46977 * 2 1 4 4 C 1.50699 * 109.46837 * 120.00094 * 2 1 3 5 5 C 1.38241 * 119.96904 * 244.99762 * 4 2 1 6 6 C 1.38293 * 120.10934 * 180.02562 * 5 4 2 7 7 C 1.38122 * 120.05543 * 0.02562 * 6 5 4 8 8 C 1.38750 * 119.94304 * 359.97438 * 7 6 5 9 9 O 1.35910 * 120.05262 * 180.02562 * 8 7 6 10 10 C 1.42896 * 117.00135 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47362 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99679 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00276 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99711 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47635 * 324.99626 * 14 13 11 16 16 C 1.53000 * 109.47432 * 85.00102 * 14 13 11 17 17 C 1.52996 * 109.47518 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47131 * 300.00172 * 17 16 14 19 19 H 1.09001 * 109.47289 * 299.99950 * 18 17 16 20 20 C 1.53006 * 109.47127 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.46764 * 299.99647 * 20 18 17 22 22 F 1.39897 * 109.47129 * 59.99625 * 20 18 17 23 23 F 1.39903 * 109.46814 * 180.02562 * 20 18 17 24 24 C 1.52997 * 109.47232 * 59.99874 * 18 17 16 25 25 C 1.52996 * 109.46975 * 299.99763 * 24 18 17 26 26 C 1.38168 * 119.97430 * 65.25730 * 4 2 1 27 27 H 0.96697 * 113.99785 * 300.00251 * 1 2 3 28 28 H 1.09000 * 109.46610 * 239.99932 * 2 1 3 29 29 H 1.48502 * 109.99627 * 178.68151 * 3 2 1 30 30 H 1.48496 * 110.00287 * 299.99638 * 3 2 1 31 31 H 1.07993 * 119.94820 * 0.02562 * 5 4 2 32 32 H 1.08000 * 119.96797 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.02881 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47366 * 59.99312 * 10 9 8 35 35 H 1.09006 * 109.46768 * 299.99786 * 10 9 8 36 36 H 0.96994 * 119.99743 * 359.97438 * 13 11 10 37 37 H 1.09000 * 109.46968 * 299.99559 * 16 14 13 38 38 H 1.09001 * 109.47194 * 59.99360 * 16 14 13 39 39 H 1.08996 * 109.47452 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46997 * 59.99746 * 17 16 14 41 41 H 1.09001 * 109.47375 * 60.00133 * 24 18 17 42 42 H 1.09000 * 109.47140 * 180.02562 * 24 18 17 43 43 H 1.09004 * 109.47108 * 180.02562 * 25 24 18 44 44 H 1.09001 * 109.47367 * 299.99815 * 25 24 18 45 45 H 1.08000 * 120.02364 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6387 -0.0117 2.1909 6 6 3.1014 -0.6609 3.3209 7 6 2.8582 -2.0096 3.4923 8 6 2.1484 -2.7131 2.5297 9 8 1.9073 -4.0403 2.6963 10 6 2.4135 -4.6472 3.8869 11 6 2.0516 -6.1100 3.8980 12 8 1.4225 -6.5860 2.9768 13 7 2.4278 -6.8894 4.9312 14 6 2.0755 -8.3113 4.9421 15 1 1.0965 -8.4467 4.4826 16 6 3.1221 -9.1023 4.1549 17 6 2.7545 -10.5874 4.1669 18 6 2.7145 -11.0912 5.6110 19 1 3.6936 -10.9556 6.0704 20 6 2.3462 -12.5763 5.6230 21 9 1.0893 -12.7497 5.0336 22 9 3.3028 -13.2998 4.9029 23 9 2.3090 -13.0368 6.9436 24 6 1.6678 -10.3004 6.3982 25 6 2.0355 -8.8153 6.3863 26 6 1.6891 -2.0607 1.3952 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5139 -0.8900 29 1 3.5346 1.7702 0.0321 30 1 1.5616 2.4679 -1.2085 31 1 2.8303 1.0428 2.0586 32 1 3.6542 -0.1128 4.0696 33 1 3.2201 -2.5163 4.3747 34 1 1.9768 -4.1585 4.7578 35 1 3.4979 -4.5405 3.9162 36 1 2.9319 -6.5089 5.6673 37 1 3.1508 -8.7431 3.1261 38 1 4.1012 -8.9670 4.6144 39 1 3.5003 -11.1509 3.6064 40 1 1.7753 -10.7230 3.7075 41 1 0.6886 -10.4360 5.9389 42 1 1.6396 -10.6590 7.4272 43 1 1.2901 -8.2519 6.9476 44 1 3.0146 -8.6797 6.8457 45 1 1.1397 -2.6069 0.6427 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12301704_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:21:28 Heat of formation + Delta-G solvation = -238.199105 kcal Electronic energy + Delta-G solvation = -31632.693949 eV Core-core repulsion = 26587.590692 eV Total energy + Delta-G solvation = -5045.103257 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.138 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.13990 -48.63245 -48.61734 -41.62777 -40.90072 -39.50948 -38.77253 -37.22792 -35.61864 -32.49523 -32.21586 -31.95969 -31.30609 -29.10108 -26.87081 -26.21727 -24.01285 -23.67437 -23.23095 -22.30935 -21.60535 -21.12450 -19.39548 -19.30884 -19.27549 -18.65727 -18.44607 -17.82690 -17.43584 -17.30308 -17.02879 -16.75507 -16.19000 -15.98769 -15.68829 -15.57873 -15.44253 -15.12884 -15.10997 -14.97645 -14.93903 -14.78854 -14.78193 -14.68570 -14.50179 -14.18987 -14.02721 -13.76883 -13.57774 -13.43275 -13.29683 -12.92536 -12.61100 -12.51879 -12.24498 -12.13808 -12.09846 -12.01482 -11.68320 -11.64950 -11.46230 -10.98666 -10.49248 -10.19635 -9.93827 -9.28397 -4.99210 0.20773 0.39117 1.27636 1.42783 1.47900 1.65817 1.76946 1.97611 2.56255 2.67462 2.80704 2.93777 3.01980 3.48681 3.53394 3.59235 3.63598 3.68296 3.84775 3.87754 4.00590 4.04179 4.06862 4.11151 4.13464 4.20707 4.25049 4.25487 4.34578 4.36956 4.49099 4.55552 4.64176 4.69937 4.85627 4.95394 4.97798 5.03074 5.04239 5.17732 5.20850 5.24629 5.37196 5.41111 5.45183 5.70188 6.27718 6.47474 6.74768 7.13047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.087 4.087 3 Si 0.796 3.204 4 C -0.085 4.085 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.113 3.887 9 O -0.325 6.325 10 C 0.037 3.963 11 C 0.512 3.488 12 O -0.573 6.573 13 N -0.703 5.703 14 C 0.142 3.858 15 H 0.064 0.936 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.123 4.123 19 H 0.141 0.859 20 C 0.447 3.553 21 F -0.193 7.193 22 F -0.192 7.192 23 F -0.188 7.188 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.152 4.152 27 H 0.396 0.604 28 H 0.099 0.901 29 H -0.281 1.281 30 H -0.302 1.302 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.423 0.577 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 6.067 10.413 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.196 4.196 3 Si 0.701 3.299 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.087 4.087 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.238 6.238 10 C -0.040 4.040 11 C 0.298 3.702 12 O -0.452 6.452 13 N -0.357 5.357 14 C 0.037 3.963 15 H 0.082 0.918 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.143 4.143 19 H 0.159 0.841 20 C 0.393 3.607 21 F -0.175 7.175 22 F -0.174 7.174 23 F -0.170 7.170 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.171 4.171 27 H 0.246 0.754 28 H 0.116 0.884 29 H -0.207 1.207 30 H -0.230 1.230 31 H 0.169 0.831 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.088 5.819 8.680 11.623 hybrid contribution -0.058 -1.368 -0.481 1.451 sum 5.030 4.451 8.199 10.599 Atomic orbital electron populations 1.86484 1.17388 1.82324 1.50448 1.25442 0.85312 1.11931 0.96882 0.93558 0.77706 0.74017 0.84581 1.20203 0.98285 0.93023 0.97074 1.21219 1.00632 1.00600 0.94861 1.21362 0.96704 0.93535 0.97142 1.21644 1.03430 0.96382 1.00521 1.19195 0.96299 0.82338 0.95331 1.86127 1.74689 1.20856 1.42174 1.22751 1.02557 0.90156 0.88577 1.20577 0.78788 0.88587 0.82256 1.90779 1.41027 1.76053 1.37308 1.45686 1.57569 1.09322 1.23140 1.21051 0.98364 0.79202 0.97658 0.91773 1.21804 1.00130 0.93175 1.00673 1.21535 1.03316 0.96826 0.93728 1.22598 1.04955 0.86101 1.00599 0.84144 1.21063 0.74107 0.92581 0.72956 1.93164 1.43350 1.96566 1.84392 1.93172 1.64455 1.81187 1.78574 1.93177 1.96231 1.91080 1.36492 1.21594 0.97528 0.95090 1.01287 1.21696 1.05030 0.94274 0.93783 1.20301 1.04448 0.94675 0.97701 0.75436 0.88379 1.20737 1.23045 0.83131 0.81759 0.82012 0.85524 0.85697 0.73845 0.92970 0.88860 0.90061 0.91691 0.91272 0.88676 0.89172 0.87988 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.83 12.84 -148.98 -1.91 -3.75 16 2 C -0.09 -0.16 2.80 71.24 0.20 0.03 16 3 Si 0.80 -1.75 29.80 68.60 2.04 0.30 16 4 C -0.09 -0.18 5.35 -19.88 -0.11 -0.29 16 5 C -0.16 0.46 8.67 22.28 0.19 0.65 16 6 C -0.07 0.37 10.04 22.26 0.22 0.59 16 7 C -0.20 0.73 9.04 22.36 0.20 0.93 16 8 C 0.11 0.44 6.69 22.50 0.15 0.59 16 9 O -0.32 -2.13 9.67 -73.50 -0.71 -2.84 16 10 C 0.04 -0.15 5.22 71.23 0.37 0.22 16 11 C 0.51 0.73 7.87 87.66 0.69 1.42 16 12 O -0.57 -8.03 16.16 15.99 0.26 -7.77 16 13 N -0.70 4.89 5.08 -442.54 -2.25 2.64 16 14 C 0.14 -0.67 2.45 44.99 0.11 -0.56 16 15 H 0.06 0.13 7.58 -2.39 -0.02 0.11 16 16 C -0.12 0.48 5.49 30.59 0.17 0.64 16 17 C -0.12 0.36 4.96 30.59 0.15 0.51 16 18 C -0.12 0.68 2.17 -10.79 -0.02 0.65 16 19 H 0.14 -1.40 8.14 -2.39 -0.02 -1.42 16 20 C 0.45 0.32 2.69 71.98 0.19 0.51 16 21 F -0.19 -0.83 16.28 44.97 0.73 -0.10 16 22 F -0.19 -0.68 16.80 44.97 0.76 0.08 16 23 F -0.19 -0.39 16.80 44.97 0.76 0.36 16 24 C -0.12 0.85 4.96 30.59 0.15 1.00 16 25 C -0.11 1.16 5.39 30.59 0.16 1.33 16 26 C -0.15 -1.02 9.63 22.36 0.22 -0.80 16 27 H 0.40 -2.20 8.70 -74.06 -0.64 -2.85 16 28 H 0.10 0.42 7.96 -2.39 -0.02 0.40 16 29 H -0.28 -0.47 7.11 99.48 0.71 0.24 16 30 H -0.30 -1.71 7.11 99.48 0.71 -1.01 16 31 H 0.15 -1.20 4.90 -2.91 -0.01 -1.21 16 32 H 0.16 -1.95 8.06 -2.91 -0.02 -1.97 16 33 H 0.16 -1.77 6.30 -2.91 -0.02 -1.79 16 34 H 0.13 -1.38 7.66 -2.39 -0.02 -1.40 16 35 H 0.13 -1.33 7.66 -2.38 -0.02 -1.35 16 36 H 0.42 -6.50 8.60 -92.71 -0.80 -7.30 16 37 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H 0.08 -0.23 7.80 -2.39 -0.02 -0.25 16 40 H 0.06 0.02 7.80 -2.39 -0.02 0.00 16 41 H 0.07 -0.29 7.80 -2.39 -0.02 -0.31 16 42 H 0.09 -0.82 7.80 -2.39 -0.02 -0.84 16 43 H 0.09 -1.03 8.14 -2.38 -0.02 -1.05 16 44 H 0.10 -1.53 8.14 -2.39 -0.02 -1.55 16 45 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 Total: 0.00 -29.13 378.43 2.38 -26.75 By element: Atomic # 1 Polarization: -22.77 SS G_CDS: -0.35 Total: -23.12 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 3.06 Total: 7.45 kcal Atomic # 7 Polarization: 4.89 SS G_CDS: -2.25 Total: 2.64 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -2.36 Total: -14.36 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 2.24 Total: 0.34 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.04 Total: 0.30 kcal Total: -29.13 2.38 -26.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12301704_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.447 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds