Wall clock time and date at job start Tue Mar 9 2021 14:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35658 * 117.00276 * 2 1 4 4 C 1.38404 * 120.11830 * 359.72984 * 3 2 1 5 5 C 1.38725 * 120.02968 * 179.74921 * 4 3 2 6 6 O 1.35709 * 119.86199 * 180.29667 * 5 4 3 7 7 C 1.42903 * 117.00202 * 0.24867 * 6 5 4 8 8 C 1.39142 * 120.27247 * 0.54520 * 5 4 3 9 9 C 1.50699 * 119.88061 * 179.72714 * 8 5 4 10 10 O 1.42902 * 109.47191 * 74.97507 * 9 8 5 11 11 Si 1.86301 * 109.47282 * 194.97959 * 9 8 5 12 12 C 1.37579 * 120.24296 * 359.70360 * 8 5 4 13 13 C 1.39817 * 119.96297 * 0.02825 * 12 8 5 14 14 C 1.47310 * 120.13657 * 179.97438 * 13 12 8 15 15 O 1.21618 * 120.00064 * 180.02562 * 14 13 12 16 16 N 1.34769 * 119.99679 * 0.02562 * 14 13 12 17 17 C 1.46504 * 119.99924 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47004 * 180.02562 * 17 16 14 19 19 H 1.08998 * 112.85370 * 43.80614 * 18 17 16 20 20 C 1.53786 * 113.61121 * 175.00315 * 18 17 16 21 21 C 1.53781 * 87.07948 * 139.98084 * 20 18 17 22 22 H 1.08999 * 113.61513 * 89.20489 * 21 20 18 23 23 O 1.42907 * 113.61034 * 220.01343 * 21 20 18 24 24 C 1.53768 * 87.08161 * 334.56443 * 21 20 18 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99682 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99803 * 1 2 3 28 28 H 1.08002 * 119.98309 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47312 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47067 * 300.00163 * 7 6 5 31 31 H 1.08994 * 109.46816 * 60.00351 * 7 6 5 32 32 H 1.09009 * 109.47040 * 314.98097 * 9 8 5 33 33 H 0.96700 * 114.00346 * 180.02562 * 10 9 8 34 34 H 1.48507 * 109.99722 * 178.68018 * 11 9 8 35 35 H 1.48492 * 109.99958 * 299.99809 * 11 9 8 36 36 H 1.08004 * 120.02291 * 180.02562 * 12 8 5 37 37 H 0.97002 * 120.00491 * 0.02562 * 16 14 13 38 38 H 1.08997 * 109.47327 * 300.00240 * 17 16 14 39 39 H 1.09003 * 109.46819 * 60.00257 * 17 16 14 40 40 H 1.09007 * 113.60950 * 254.52836 * 20 18 17 41 41 H 1.08999 * 113.61489 * 25.34354 * 20 18 17 42 42 H 0.96698 * 113.99641 * 180.02562 * 23 21 20 43 43 H 1.09001 * 113.61921 * 270.88419 * 24 21 20 44 44 H 1.09003 * 113.61352 * 139.98511 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2936 2.3710 -0.0056 5 6 1.9254 3.6061 -0.0004 6 8 1.1853 4.7436 0.0002 7 6 -0.2358 4.5931 0.0006 8 6 3.3146 3.6833 -0.0009 9 6 3.9917 5.0297 -0.0013 10 8 3.8941 5.6124 1.2998 11 14 5.7864 4.8221 -0.4559 12 6 4.0725 2.5351 -0.0004 13 6 3.4462 1.2850 -0.0001 14 6 4.2539 0.0531 -0.0001 15 8 3.7066 -1.0329 -0.0003 16 7 5.5994 0.1297 0.0000 17 6 6.4028 -1.0955 -0.0007 18 6 7.8887 -0.7309 0.0002 19 1 8.1269 0.0734 0.6963 20 6 8.8214 -1.9476 0.1224 21 6 9.7296 -1.2557 -0.9078 22 1 10.4729 -0.5955 -0.4609 23 8 10.2902 -2.1517 -1.8696 24 6 8.4731 -0.5235 -1.4070 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2150 2.3165 -0.0096 29 1 -0.7054 5.5768 0.0006 30 1 -0.5433 4.0441 -0.8893 31 1 -0.5426 4.0437 0.8906 32 1 3.5057 5.6805 -0.7283 33 1 4.3092 6.4827 1.3732 34 1 6.4579 6.1462 -0.4909 35 1 6.4603 3.9368 0.5276 36 1 5.1506 2.5992 -0.0004 37 1 6.0360 0.9959 0.0005 38 1 6.1723 -1.6816 0.8889 39 1 6.1724 -1.6805 -0.8911 40 1 9.2775 -2.0509 1.1070 41 1 8.3778 -2.8757 -0.2381 42 1 10.8628 -1.7225 -2.5200 43 1 7.9348 -1.0619 -2.1870 44 1 8.6480 0.5229 -1.6573 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_12297780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:22:28 Heat of formation + Delta-G solvation = -129.564372 kcal Electronic energy + Delta-G solvation = -28099.644730 eV Core-core repulsion = 23985.787390 eV Total energy + Delta-G solvation = -4113.857340 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09415 -40.82086 -40.18979 -39.68713 -38.40343 -37.16059 -36.54237 -34.99548 -32.39641 -31.96167 -29.06859 -28.92077 -27.92006 -26.67039 -26.06743 -24.64541 -23.42919 -22.47868 -21.59432 -20.44817 -20.00521 -18.82703 -18.54247 -18.42704 -17.95960 -17.35196 -17.11267 -16.71874 -16.56997 -16.38776 -16.37322 -16.03075 -15.77823 -15.52471 -15.44923 -14.92629 -14.72096 -14.31434 -14.13597 -13.87224 -13.76785 -13.52010 -13.39495 -13.39127 -12.79427 -12.61023 -12.54899 -12.51804 -12.39536 -12.13622 -11.88528 -11.82745 -11.63543 -11.25071 -10.99987 -10.65888 -10.40606 -10.16120 -9.92723 -9.19973 -4.91042 -0.26976 0.06490 1.30168 1.60267 1.71167 1.93567 2.08662 2.10800 2.17548 2.57356 3.31000 3.34940 3.48700 3.53744 3.62425 3.69112 3.75263 3.84523 3.86797 4.02410 4.09136 4.17063 4.22924 4.24941 4.27405 4.28360 4.30303 4.38387 4.45998 4.63143 4.66946 4.68623 4.75991 4.80916 4.85693 4.86596 4.92815 5.03618 5.05770 5.17749 5.28228 5.35888 5.50621 6.02195 6.27535 6.50423 6.65126 6.94191 7.21797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.305 6.305 3 C 0.217 3.783 4 C -0.310 4.310 5 C 0.214 3.786 6 O -0.311 6.311 7 C 0.011 3.989 8 C -0.162 4.162 9 C -0.076 4.076 10 O -0.556 6.556 11 Si 0.757 3.243 12 C 0.001 3.999 13 C -0.228 4.228 14 C 0.561 3.439 15 O -0.566 6.566 16 N -0.717 5.717 17 C 0.135 3.865 18 C -0.114 4.114 19 H 0.119 0.881 20 C -0.129 4.129 21 C 0.073 3.927 22 H 0.102 0.898 23 O -0.585 6.585 24 C -0.159 4.159 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.165 0.835 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.392 0.608 34 H -0.282 1.282 35 H -0.269 1.269 36 H 0.159 0.841 37 H 0.410 0.590 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.395 0.605 43 H 0.079 0.921 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 6.502 -2.791 7.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.216 6.216 3 C 0.168 3.832 4 C -0.329 4.329 5 C 0.166 3.834 6 O -0.222 6.222 7 C -0.082 4.082 8 C -0.163 4.163 9 C -0.183 4.183 10 O -0.366 6.366 11 Si 0.660 3.340 12 C -0.017 4.017 13 C -0.232 4.232 14 C 0.350 3.650 15 O -0.446 6.446 16 N -0.371 5.371 17 C 0.012 3.988 18 C -0.133 4.133 19 H 0.137 0.863 20 C -0.167 4.167 21 C 0.015 3.985 22 H 0.120 0.880 23 O -0.393 6.393 24 C -0.197 4.197 25 H 0.131 0.869 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.183 0.817 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.242 0.758 34 H -0.209 1.209 35 H -0.196 1.196 36 H 0.176 0.824 37 H 0.247 0.753 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.245 0.755 43 H 0.097 0.903 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.266 4.846 -2.090 5.285 hybrid contribution -0.540 1.480 0.635 1.699 sum -0.274 6.327 -1.456 6.498 Atomic orbital electron populations 1.23488 0.76456 1.05796 1.02711 1.86366 1.23287 1.25870 1.86040 1.18970 0.91028 0.84777 0.88430 1.21414 1.02054 0.90640 1.18830 1.18909 0.90862 0.85042 0.88599 1.86110 1.21088 1.28535 1.86510 1.23480 0.76206 1.05956 1.02608 1.18603 0.90412 0.94985 1.12332 1.24882 1.12638 0.92979 0.87835 1.86568 1.80884 1.38626 1.30498 0.94366 0.71336 0.80772 0.87554 1.20946 1.00153 0.89029 0.91618 1.19124 0.90931 0.93685 1.19489 1.18069 0.82554 0.88373 0.75967 1.90814 1.72416 1.30310 1.51082 1.45778 1.05125 1.10637 1.75513 1.21295 0.89613 0.86307 1.01583 1.22550 0.91609 0.99802 0.99301 0.86328 1.23094 0.96258 0.97781 0.99568 1.23447 0.93343 0.91666 0.90073 0.88023 1.86501 1.68526 1.38825 1.45471 1.23745 0.97370 1.02407 0.96190 0.86870 0.90721 0.91191 0.81724 0.86054 0.90861 0.91711 0.89871 0.75784 1.20872 1.19564 0.82363 0.75277 0.92370 0.92302 0.89787 0.90401 0.75535 0.90252 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -3.07 8.56 -68.77 -0.59 -3.66 16 3 C 0.22 1.75 6.70 22.82 0.15 1.90 16 4 C -0.31 -1.00 8.01 22.43 0.18 -0.82 16 5 C 0.21 0.87 6.67 22.60 0.15 1.02 16 6 O -0.31 -0.79 9.80 -90.30 -0.88 -1.67 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.16 -0.53 5.30 -19.80 -0.11 -0.63 16 9 C -0.08 0.01 2.36 71.24 0.17 0.18 16 10 O -0.56 -1.49 12.86 -148.98 -1.92 -3.41 16 11 Si 0.76 -3.50 30.19 68.60 2.07 -1.42 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.73 5.89 -20.00 -0.12 -1.85 16 14 C 0.56 5.89 7.76 86.63 0.67 6.57 16 15 O -0.57 -10.81 15.15 16.87 0.26 -10.56 16 16 N -0.72 -2.10 5.50 -466.49 -2.57 -4.67 16 17 C 0.14 0.36 5.51 86.38 0.48 0.84 16 18 C -0.11 0.36 3.76 -10.27 -0.04 0.32 16 19 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 20 C -0.13 0.10 7.47 31.12 0.23 0.33 16 21 C 0.07 -0.18 5.21 31.12 0.16 -0.02 16 22 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 23 O -0.58 -0.73 13.67 -148.98 -2.04 -2.77 16 24 C -0.16 0.62 7.46 31.12 0.23 0.85 16 25 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 -0.29 7.65 -2.39 -0.02 -0.31 16 27 H 0.07 -0.22 7.67 -2.38 -0.02 -0.24 16 28 H 0.17 -0.38 4.50 -2.91 -0.01 -0.39 16 29 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 30 H 0.07 -0.56 7.64 -2.39 -0.02 -0.57 16 31 H 0.06 -0.38 7.66 -2.39 -0.02 -0.40 16 32 H 0.08 -0.16 7.82 -2.38 -0.02 -0.18 16 33 H 0.39 -2.11 8.74 -74.06 -0.65 -2.76 16 34 H -0.28 0.10 7.11 99.48 0.71 0.81 16 35 H -0.27 0.47 6.74 99.48 0.67 1.14 16 36 H 0.16 -0.50 3.20 -2.91 -0.01 -0.51 16 37 H 0.41 -1.34 6.49 -92.71 -0.60 -1.94 16 38 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.06 0.34 7.84 -2.39 -0.02 0.32 16 40 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 41 H 0.08 0.21 8.10 -2.39 -0.02 0.20 16 42 H 0.39 -2.83 9.12 -74.06 -0.68 -3.51 16 43 H 0.08 -0.04 7.90 -2.39 -0.02 -0.06 16 44 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: 0.00 -26.96 360.73 -1.95 -28.91 By element: Atomic # 1 Polarization: -10.95 SS G_CDS: -0.85 Total: -11.80 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 4.57 Total: 11.04 kcal Atomic # 7 Polarization: -2.10 SS G_CDS: -2.57 Total: -4.67 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -5.17 Total: -22.06 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.07 Total: -1.42 kcal Total: -26.96 -1.95 -28.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_12297780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.656 kcal (2) G-P(sol) polarization free energy of solvation -26.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds