Wall clock time and date at job start Tue Mar 9 2021 14:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.47041 * 2 1 4 4 C 1.50704 * 109.47379 * 239.99934 * 2 1 3 5 5 C 1.37811 * 119.94101 * 254.72973 * 4 2 1 6 6 C 1.39676 * 119.87751 * 180.27710 * 5 4 2 7 7 C 1.47723 * 120.11675 * 179.97438 * 6 5 4 8 8 O 1.21570 * 119.99737 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99909 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99626 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08994 * 112.85193 * 316.19181 * 11 10 9 13 13 C 1.53775 * 113.61654 * 87.50811 * 11 10 9 14 14 C 1.53777 * 87.08579 * 139.98028 * 13 11 10 15 15 H 1.08992 * 113.61823 * 89.11221 * 14 13 11 16 16 O 1.42900 * 113.61235 * 220.02201 * 14 13 11 17 17 C 1.53784 * 87.07872 * 334.56476 * 14 13 11 18 18 C 1.39628 * 119.76359 * 0.02562 * 6 5 4 19 19 C 1.37855 * 119.88414 * 359.97438 * 18 6 5 20 20 C 1.38634 * 120.11575 * 359.97438 * 19 18 6 21 21 F 1.35097 * 119.88094 * 180.02562 * 20 19 18 22 22 H 0.96702 * 113.99858 * 60.00264 * 1 2 3 23 23 H 1.09001 * 109.47362 * 120.00034 * 2 1 3 24 24 H 1.48499 * 109.99745 * 298.68044 * 3 2 1 25 25 H 1.48493 * 110.00023 * 59.99896 * 3 2 1 26 26 H 1.07993 * 120.06381 * 0.24668 * 5 4 2 27 27 H 0.96998 * 119.99941 * 0.02562 * 9 7 6 28 28 H 1.08994 * 109.47640 * 300.00081 * 10 9 7 29 29 H 1.09000 * 109.47395 * 60.00558 * 10 9 7 30 30 H 1.09001 * 113.61228 * 254.53261 * 13 11 10 31 31 H 1.08997 * 113.61889 * 25.42614 * 13 11 10 32 32 H 0.96704 * 113.99459 * 277.48808 * 16 14 13 33 33 H 1.08999 * 113.61721 * 270.88681 * 17 14 13 34 34 H 1.09001 * 113.61123 * 139.98401 * 17 14 13 35 35 H 1.08004 * 120.05709 * 180.02562 * 18 6 5 36 36 H 1.07995 * 119.94439 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4572 -1.9799 -1.1252 6 6 2.9278 -2.6349 -2.2656 7 6 3.4930 -3.9955 -2.1588 8 8 3.5487 -4.5473 -1.0770 9 7 3.9469 -4.6251 -3.2607 10 6 4.5069 -5.9746 -3.1548 11 6 4.9450 -6.4550 -4.5398 12 1 4.2140 -6.2306 -5.3165 13 6 6.3816 -6.0479 -4.9072 14 6 6.5349 -7.4456 -5.5297 15 1 6.2396 -7.4916 -6.5779 16 8 7.8084 -8.0453 -5.2837 17 6 5.4368 -7.9120 -4.5594 18 6 2.8631 -1.9985 -3.5068 19 6 2.3352 -0.7285 -3.6008 20 6 1.8685 -0.0834 -2.4659 21 9 1.3516 1.1609 -2.5635 22 1 -0.3933 0.4417 -0.7651 23 1 1.7924 -0.5138 0.8900 24 1 1.5878 2.4585 -1.2242 25 1 1.5614 2.4679 1.2084 26 1 2.5058 -2.4673 -0.1628 27 1 3.9027 -4.1846 -4.1238 28 1 5.3680 -5.9594 -2.4868 29 1 3.7507 -6.6517 -2.7575 30 1 6.4334 -5.2378 -5.6346 31 1 7.0235 -5.8826 -4.0418 32 1 8.5032 -7.7559 -5.8909 33 1 5.8202 -8.2563 -3.5989 34 1 4.7257 -8.6070 -5.0061 35 1 3.2252 -2.5007 -4.3917 36 1 2.2842 -0.2355 -4.5603 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_12496548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:23:02 Heat of formation + Delta-G solvation = -99.861192 kcal Electronic energy + Delta-G solvation = -21516.138230 eV Core-core repulsion = 17882.554564 eV Total energy + Delta-G solvation = -3633.583667 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.47429 -41.46754 -40.37952 -39.53872 -37.83091 -36.62212 -35.15441 -32.96719 -32.06322 -28.92996 -26.98616 -26.68790 -24.92824 -23.53412 -23.15293 -21.62363 -20.45947 -19.32839 -18.87375 -18.50978 -17.91847 -17.85384 -17.18440 -16.92269 -16.57252 -16.22265 -16.14213 -15.65313 -15.47843 -15.03798 -14.97644 -14.80236 -14.56507 -14.04448 -13.87392 -13.64358 -13.41491 -13.30643 -12.96763 -12.64253 -12.41333 -12.36202 -11.84339 -11.37209 -11.29095 -11.21918 -10.88665 -10.68003 -10.27894 -10.12670 -9.82255 -4.97597 -0.52627 0.01444 1.18829 1.55531 1.58071 1.92430 2.01491 2.55111 2.96198 3.22497 3.31555 3.43929 3.44853 3.57177 3.59888 3.67785 3.83480 3.97143 4.01861 4.10492 4.21538 4.33437 4.37701 4.61877 4.67126 4.76053 4.79909 4.83790 4.86393 4.89144 4.98387 5.03111 5.09499 5.15545 5.29402 5.47914 5.59047 6.30125 6.42419 6.92206 7.09544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.084 4.084 3 Si 0.751 3.249 4 C -0.155 4.155 5 C -0.023 4.023 6 C -0.153 4.153 7 C 0.557 3.443 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.132 3.868 11 C -0.109 4.109 12 H 0.125 0.875 13 C -0.160 4.160 14 C 0.071 3.929 15 H 0.102 0.898 16 O -0.586 6.586 17 C -0.131 4.131 18 C -0.039 4.039 19 C -0.146 4.146 20 C 0.109 3.891 21 F -0.130 7.130 22 H 0.384 0.616 23 H 0.129 0.871 24 H -0.251 1.251 25 H -0.307 1.307 26 H 0.138 0.862 27 H 0.417 0.583 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.394 0.606 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.176 0.824 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 1.069 -8.923 9.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.193 4.193 3 Si 0.654 3.346 4 C -0.157 4.157 5 C -0.042 4.042 6 C -0.156 4.156 7 C 0.345 3.655 8 O -0.461 6.461 9 N -0.359 5.359 10 C 0.008 3.992 11 C -0.127 4.127 12 H 0.143 0.857 13 C -0.197 4.197 14 C 0.012 3.988 15 H 0.120 0.880 16 O -0.395 6.395 17 C -0.169 4.169 18 C -0.057 4.057 19 C -0.164 4.164 20 C 0.089 3.911 21 F -0.109 7.109 22 H 0.233 0.767 23 H 0.147 0.853 24 H -0.176 1.176 25 H -0.235 1.235 26 H 0.156 0.844 27 H 0.256 0.744 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.193 0.807 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.714 0.919 -7.181 7.732 hybrid contribution -0.997 0.370 -0.763 1.309 sum 1.718 1.289 -7.944 8.229 Atomic orbital electron populations 1.86624 1.18150 1.80298 1.50067 1.25185 0.83600 1.12218 0.98262 0.94615 0.90272 0.72614 0.77080 1.20141 1.04581 0.96325 0.94605 1.21015 0.92233 0.91671 0.99255 1.19973 1.05432 0.94753 0.95422 1.18412 0.77399 0.85708 0.84004 1.90806 1.57937 1.68266 1.29114 1.45740 1.62064 1.17604 1.10472 1.21334 0.97990 0.82339 0.97505 1.22530 0.97556 0.96306 0.96320 0.85676 1.23732 0.95855 0.98354 1.01802 1.23486 0.83681 0.92737 0.98894 0.87984 1.86504 1.20867 1.70874 1.61228 1.23109 0.97075 0.96438 1.00282 1.21518 0.93998 0.93366 0.96831 1.21413 1.00455 0.95927 0.98618 1.18118 0.97603 0.80434 0.94900 1.91554 1.84471 1.38408 1.96427 0.76723 0.85343 1.17591 1.23541 0.84435 0.74396 0.92474 0.92037 0.89043 0.90580 0.75558 0.90582 0.89677 0.80678 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.72 12.88 -148.98 -1.92 -4.64 16 2 C -0.08 -0.13 2.80 71.24 0.20 0.07 16 3 Si 0.75 0.34 30.82 68.60 2.11 2.45 16 4 C -0.16 -0.08 4.78 -19.86 -0.09 -0.17 16 5 C -0.02 -0.04 9.21 22.52 0.21 0.16 16 6 C -0.15 0.10 5.87 -20.09 -0.12 -0.02 16 7 C 0.56 1.78 7.77 86.75 0.67 2.46 16 8 O -0.58 -7.50 16.34 -3.94 -0.06 -7.56 16 9 N -0.71 2.81 5.51 -466.10 -2.57 0.24 16 10 C 0.13 -0.28 5.51 86.38 0.48 0.20 16 11 C -0.11 0.79 3.75 -10.27 -0.04 0.75 16 12 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 13 C -0.16 1.08 7.46 31.12 0.23 1.31 16 14 C 0.07 -0.33 5.21 31.12 0.16 -0.17 16 15 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 16 O -0.59 0.13 13.67 -148.98 -2.04 -1.90 16 17 C -0.13 0.46 7.47 31.12 0.23 0.69 16 18 C -0.04 0.30 9.54 22.51 0.21 0.51 16 19 C -0.15 0.94 10.01 22.27 0.22 1.17 16 20 C 0.11 -0.15 6.62 22.47 0.15 0.00 16 21 F -0.13 -0.12 12.57 44.97 0.57 0.45 16 22 H 0.38 -0.09 8.39 -74.06 -0.62 -0.71 16 23 H 0.13 0.00 7.76 -2.39 -0.02 -0.02 16 24 H -0.25 -0.89 5.28 99.48 0.52 -0.36 16 25 H -0.31 -2.53 7.11 99.48 0.71 -1.83 16 26 H 0.14 0.53 7.58 -2.91 -0.02 0.51 16 27 H 0.42 -4.84 6.50 -92.71 -0.60 -5.44 16 28 H 0.06 0.10 7.84 -2.39 -0.02 0.08 16 29 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.08 -0.21 7.89 -2.39 -0.02 -0.23 16 32 H 0.39 -3.33 9.12 -74.05 -0.68 -4.01 16 33 H 0.08 0.03 8.10 -2.39 -0.02 0.01 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.18 -2.76 6.40 -2.91 -0.02 -2.78 16 36 H 0.17 -2.01 8.06 -2.91 -0.02 -2.03 16 Total: 0.00 -22.28 308.55 -2.29 -24.57 By element: Atomic # 1 Polarization: -19.66 SS G_CDS: -0.90 Total: -20.57 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 2.52 Total: 6.96 kcal Atomic # 7 Polarization: 2.81 SS G_CDS: -2.57 Total: 0.24 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -4.02 Total: -14.11 kcal Atomic # 9 Polarization: -0.12 SS G_CDS: 0.57 Total: 0.45 kcal Atomic # 14 Polarization: 0.34 SS G_CDS: 2.11 Total: 2.45 kcal Total: -22.28 -2.29 -24.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_12496548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.291 kcal (2) G-P(sol) polarization free energy of solvation -22.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds