Wall clock time and date at job start Tue Mar 9 2021 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47560 * 125.94613 * 180.28489 * 7 6 5 9 9 C 1.39921 * 119.95672 * 359.72916 * 8 7 6 10 10 C 1.36433 * 120.28012 * 179.75983 * 9 8 7 11 11 C 1.39873 * 120.18490 * 0.51431 * 10 9 8 12 12 C 1.47294 * 120.04781 * 179.76178 * 11 10 9 13 13 O 1.21620 * 120.00126 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00534 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47251 * 179.97438 * 15 14 12 17 17 H 1.08994 * 112.85337 * 316.19349 * 16 15 14 18 18 C 1.53789 * 113.61424 * 87.50566 * 16 15 14 19 19 C 1.53773 * 87.08222 * 139.97776 * 18 16 15 20 20 H 1.09004 * 113.69138 * 89.12608 * 19 18 16 21 21 O 1.42899 * 113.61411 * 220.01510 * 19 18 16 22 22 C 1.53779 * 113.61250 * 184.99771 * 16 15 14 23 23 C 1.40409 * 119.90516 * 359.73601 * 11 10 9 24 24 O 1.35686 * 120.13473 * 179.97438 * 23 11 10 25 25 C 1.38269 * 119.72816 * 0.02562 * 23 11 10 26 26 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 27 27 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 28 28 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 29 29 H 1.48500 * 110.00201 * 178.67987 * 3 2 1 30 30 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 31 31 H 1.08005 * 126.47473 * 359.97438 * 5 4 2 32 32 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 33 33 H 1.08004 * 119.86060 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.90818 * 180.23060 * 10 9 8 35 35 H 0.97010 * 119.99913 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.46317 * 299.99889 * 15 14 12 37 37 H 1.08996 * 109.46470 * 59.99106 * 15 14 12 38 38 H 1.09004 * 113.61101 * 254.52863 * 18 16 15 39 39 H 1.09001 * 113.61504 * 25.42724 * 18 16 15 40 40 H 0.96697 * 114.00332 * 277.50383 * 21 19 18 41 41 H 1.09007 * 113.61737 * 334.56776 * 22 16 15 42 42 H 1.09002 * 113.61741 * 105.39003 * 22 16 15 43 43 H 0.96691 * 114.00443 * 270.02927 * 24 23 11 44 44 H 1.08003 * 120.09673 * 179.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6577 -0.8543 4.4128 9 6 3.8738 -1.9164 5.2977 10 6 4.5703 -1.7177 6.4539 11 6 5.0643 -0.4473 6.7679 12 6 5.8113 -0.2351 8.0194 13 8 6.2408 0.8698 8.2914 14 7 6.0189 -1.2652 8.8633 15 6 6.7614 -1.0541 10.1084 16 6 6.8537 -2.3736 10.8772 17 1 5.9110 -2.9206 10.8940 18 6 8.0619 -3.2367 10.4766 19 6 8.2200 -3.5689 11.9697 20 1 7.6521 -4.4438 12.2863 21 8 9.5797 -3.6014 12.4080 22 6 7.5106 -2.2358 12.2607 23 6 4.8474 0.6252 5.8880 24 8 5.3241 1.8596 6.1882 25 6 4.1453 0.4185 4.7149 26 8 2.6271 -0.1463 2.2303 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 1.2458 -2.7432 0.8933 32 1 2.4304 -3.2076 3.2685 33 1 3.4913 -2.8987 5.0624 34 1 4.7368 -2.5426 7.1308 35 1 5.6759 -2.1464 8.6466 36 1 7.7648 -0.6971 9.8768 37 1 6.2442 -0.3137 10.7187 38 1 7.7986 -4.0984 9.8631 39 1 8.8924 -2.6620 10.0668 40 1 10.0312 -4.4373 12.2277 41 1 8.1906 -1.3874 12.3388 42 1 6.8023 -2.2880 13.0876 43 1 4.7076 2.4072 6.6931 44 1 3.9747 1.2394 4.0340 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12309068_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:23:11 Heat of formation + Delta-G solvation = -81.025783 kcal Electronic energy + Delta-G solvation = -28883.492932 eV Core-core repulsion = 24542.599581 eV Total energy + Delta-G solvation = -4340.893351 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.76890 -41.56534 -40.58562 -39.44341 -38.13565 -37.83559 -36.56541 -35.05693 -34.26045 -33.44300 -31.36934 -30.66641 -28.90873 -26.94067 -26.81384 -24.55705 -24.13175 -23.38428 -22.39937 -21.95806 -21.37262 -20.65357 -19.76822 -18.98836 -18.55033 -18.29899 -17.73553 -17.47242 -17.27452 -16.70651 -16.63267 -16.30883 -16.08155 -16.03842 -15.80547 -15.53070 -15.15766 -14.88048 -14.67540 -14.33037 -14.18488 -14.05282 -13.89979 -13.71913 -13.60992 -13.54798 -13.38756 -12.89236 -12.80975 -12.67510 -12.57424 -12.13452 -11.98240 -11.84649 -11.43833 -11.15932 -10.91303 -10.76281 -10.72762 -10.61804 -10.09775 -9.98325 -9.04538 -5.09183 -0.80914 0.08317 0.63241 1.08660 1.37640 1.43339 1.72900 1.88943 1.97531 2.05392 2.62620 2.99078 3.12356 3.18915 3.31495 3.36330 3.43808 3.49875 3.65171 3.67030 3.81344 3.81896 3.87745 3.91300 4.08719 4.13826 4.21454 4.23679 4.34613 4.53307 4.58001 4.63333 4.63930 4.70227 4.73170 4.76664 4.81425 4.88384 4.96761 5.01754 5.05827 5.14593 5.23240 5.34779 5.39476 5.43885 5.92931 6.33225 6.43120 6.63205 6.67762 7.21537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.028 4.028 3 Si 0.700 3.300 4 C -0.045 4.045 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.023 3.977 8 C 0.030 3.970 9 C -0.116 4.116 10 C -0.065 4.065 11 C -0.165 4.165 12 C 0.557 3.443 13 O -0.517 6.517 14 N -0.728 5.728 15 C 0.133 3.867 16 C -0.125 4.125 17 H 0.100 0.900 18 C -0.166 4.166 19 C 0.075 3.925 20 H 0.083 0.917 21 O -0.559 6.559 22 C -0.120 4.120 23 C 0.179 3.821 24 O -0.474 6.474 25 C -0.141 4.141 26 O -0.161 6.161 27 H 0.384 0.616 28 H 0.134 0.866 29 H -0.252 1.252 30 H -0.246 1.246 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.380 0.620 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.399 0.601 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 -4.791 1.853 6.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.138 4.138 3 Si 0.599 3.401 4 C -0.095 4.095 5 C -0.193 4.193 6 C -0.196 4.196 7 C -0.026 4.026 8 C 0.029 3.971 9 C -0.134 4.134 10 C -0.083 4.083 11 C -0.168 4.168 12 C 0.344 3.656 13 O -0.393 6.393 14 N -0.381 5.381 15 C 0.009 3.991 16 C -0.143 4.143 17 H 0.118 0.882 18 C -0.203 4.203 19 C 0.016 3.984 20 H 0.101 0.899 21 O -0.365 6.365 22 C -0.158 4.158 23 C 0.132 3.868 24 O -0.285 6.285 25 C -0.159 4.159 26 O -0.058 6.058 27 H 0.232 0.768 28 H 0.151 0.849 29 H -0.176 1.176 30 H -0.170 1.170 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.227 0.773 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.258 0.742 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.586 -2.944 1.003 4.045 hybrid contribution -0.444 -1.863 -0.218 1.928 sum -3.030 -4.807 0.785 5.736 Atomic orbital electron populations 1.86566 1.16093 1.81730 1.49161 1.24422 0.85243 1.11297 0.92884 0.94262 0.81723 0.76824 0.87242 1.22999 1.00511 0.93870 0.92149 1.21584 1.04084 0.95661 0.97992 1.21907 1.02040 0.98384 0.97312 1.20323 1.03751 0.87557 0.91016 1.17749 0.95676 0.93702 0.89938 1.20701 1.00248 0.98684 0.93814 1.20806 0.95414 0.95518 0.96589 1.20500 1.04693 0.95103 0.96543 1.17971 0.79945 0.84592 0.83091 1.90855 1.49684 1.23635 1.75173 1.45902 1.57920 1.12241 1.22016 1.21347 0.97061 0.96602 0.84051 1.22583 0.98718 0.96307 0.96736 0.88173 1.23812 0.98449 1.00345 0.97735 1.23315 0.83380 0.98153 0.93536 0.89909 1.86544 1.24544 1.41338 1.84077 1.23048 0.98747 0.97826 0.96139 1.18286 0.91325 0.85783 0.91409 1.84778 1.44642 1.22721 1.76405 1.21595 0.98706 0.97535 0.98066 1.83938 1.57541 1.37885 1.26464 0.76807 0.84888 1.17637 1.16962 0.82704 0.82630 0.84371 0.84656 0.76611 0.90885 0.90901 0.91062 0.88863 0.77281 0.88625 0.90273 0.74217 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.37 12.88 -35.23 -0.45 -0.08 16 2 C -0.03 0.02 2.98 36.01 0.11 0.13 16 3 Si 0.70 -0.67 32.11 -169.99 -5.46 -6.13 16 4 C -0.04 -0.02 6.21 -35.51 -0.22 -0.24 16 5 C -0.17 -0.06 10.78 -39.82 -0.43 -0.49 16 6 C -0.18 0.02 10.26 -39.38 -0.40 -0.39 16 7 C 0.02 0.02 7.02 -36.55 -0.26 -0.24 16 8 C 0.03 0.01 5.87 -104.95 -0.62 -0.61 16 9 C -0.12 0.19 9.48 -39.60 -0.38 -0.18 16 10 C -0.06 0.12 9.47 -39.62 -0.38 -0.26 16 11 C -0.16 -0.16 5.89 -104.79 -0.62 -0.78 16 12 C 0.56 1.34 7.75 -12.58 -0.10 1.25 16 13 O -0.52 -3.23 15.14 -16.69 -0.25 -3.48 16 14 N -0.73 0.54 5.50 -61.43 -0.34 0.20 16 15 C 0.13 -0.07 5.51 -4.04 -0.02 -0.09 16 16 C -0.12 0.32 3.76 -89.81 -0.34 -0.02 16 17 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 18 C -0.17 0.35 7.46 -25.92 -0.19 0.16 16 19 C 0.08 -0.11 5.21 -25.92 -0.14 -0.25 16 20 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 21 O -0.56 -0.17 13.67 -35.23 -0.48 -0.65 16 22 C -0.12 0.16 7.47 -25.92 -0.19 -0.03 16 23 C 0.18 0.31 6.71 -38.75 -0.26 0.05 16 24 O -0.47 -1.21 11.56 -40.71 -0.47 -1.68 16 25 C -0.14 -0.11 9.65 -39.06 -0.38 -0.49 16 26 O -0.16 -0.19 8.79 4.72 0.04 -0.15 16 27 H 0.38 -1.71 8.70 45.56 0.40 -1.31 16 28 H 0.13 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H -0.25 -0.55 7.11 56.52 0.40 -0.15 16 30 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 31 H 0.16 -0.12 8.06 -52.48 -0.42 -0.54 16 32 H 0.16 -0.39 7.24 -52.49 -0.38 -0.77 16 33 H 0.14 -0.55 6.95 -52.48 -0.36 -0.91 16 34 H 0.14 -0.67 6.37 -52.49 -0.33 -1.01 16 35 H 0.40 -1.44 6.48 -40.82 -0.26 -1.70 16 36 H 0.07 0.08 7.84 -51.93 -0.41 -0.33 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 39 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 40 H 0.38 -1.40 9.12 45.56 0.42 -0.98 16 41 H 0.10 -0.02 8.10 -51.92 -0.42 -0.44 16 42 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 43 H 0.40 -0.54 9.06 45.56 0.41 -0.13 16 44 H 0.14 0.01 7.90 -52.48 -0.41 -0.41 16 LS Contribution 377.74 15.07 5.69 5.69 Total: 0.00 -11.12 377.74 -10.44 -21.56 By element: Atomic # 1 Polarization: -8.89 SS G_CDS: -3.92 Total: -12.81 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -4.80 Total: -2.47 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -0.34 Total: 0.20 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -1.62 Total: -6.04 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.46 Total: -6.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -11.12 -10.44 -21.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.467 kcal (2) G-P(sol) polarization free energy of solvation -11.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds