Wall clock time and date at job start Tue Mar 9 2021 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47560 * 125.94613 * 180.28489 * 7 6 5 9 9 C 1.39921 * 119.95672 * 359.72916 * 8 7 6 10 10 C 1.36433 * 120.28012 * 179.75983 * 9 8 7 11 11 C 1.39873 * 120.18490 * 0.51431 * 10 9 8 12 12 C 1.47294 * 120.04781 * 179.76178 * 11 10 9 13 13 O 1.21620 * 120.00126 * 179.97438 * 12 11 10 14 14 N 1.34771 * 120.00015 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00534 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47251 * 179.97438 * 15 14 12 17 17 H 1.08994 * 112.85337 * 316.19349 * 16 15 14 18 18 C 1.53789 * 113.61424 * 87.50566 * 16 15 14 19 19 C 1.53773 * 87.08222 * 139.97776 * 18 16 15 20 20 H 1.09004 * 113.69138 * 89.12608 * 19 18 16 21 21 O 1.42899 * 113.61411 * 220.01510 * 19 18 16 22 22 C 1.53779 * 113.61250 * 184.99771 * 16 15 14 23 23 C 1.40409 * 119.90516 * 359.73601 * 11 10 9 24 24 O 1.35686 * 120.13473 * 179.97438 * 23 11 10 25 25 C 1.38269 * 119.72816 * 0.02562 * 23 11 10 26 26 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 27 27 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 28 28 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 29 29 H 1.48500 * 110.00201 * 178.67987 * 3 2 1 30 30 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 31 31 H 1.08005 * 126.47473 * 359.97438 * 5 4 2 32 32 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 33 33 H 1.08004 * 119.86060 * 0.02562 * 9 8 7 34 34 H 1.07994 * 119.90818 * 180.23060 * 10 9 8 35 35 H 0.97010 * 119.99913 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.46317 * 299.99889 * 15 14 12 37 37 H 1.08996 * 109.46470 * 59.99106 * 15 14 12 38 38 H 1.09004 * 113.61101 * 254.52863 * 18 16 15 39 39 H 1.09001 * 113.61504 * 25.42724 * 18 16 15 40 40 H 0.96697 * 114.00332 * 277.50383 * 21 19 18 41 41 H 1.09007 * 113.61737 * 334.56776 * 22 16 15 42 42 H 1.09002 * 113.61741 * 105.39003 * 22 16 15 43 43 H 0.96691 * 114.00443 * 270.02927 * 24 23 11 44 44 H 1.08003 * 120.09673 * 179.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6577 -0.8543 4.4128 9 6 3.8738 -1.9164 5.2977 10 6 4.5703 -1.7177 6.4539 11 6 5.0643 -0.4473 6.7679 12 6 5.8113 -0.2351 8.0194 13 8 6.2408 0.8698 8.2914 14 7 6.0189 -1.2652 8.8633 15 6 6.7614 -1.0541 10.1084 16 6 6.8537 -2.3736 10.8772 17 1 5.9110 -2.9206 10.8940 18 6 8.0619 -3.2367 10.4766 19 6 8.2200 -3.5689 11.9697 20 1 7.6521 -4.4438 12.2863 21 8 9.5797 -3.6014 12.4080 22 6 7.5106 -2.2358 12.2607 23 6 4.8474 0.6252 5.8880 24 8 5.3241 1.8596 6.1882 25 6 4.1453 0.4185 4.7149 26 8 2.6271 -0.1463 2.2303 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 1.2458 -2.7432 0.8933 32 1 2.4304 -3.2076 3.2685 33 1 3.4913 -2.8987 5.0624 34 1 4.7368 -2.5426 7.1308 35 1 5.6759 -2.1464 8.6466 36 1 7.7648 -0.6971 9.8768 37 1 6.2442 -0.3137 10.7187 38 1 7.7986 -4.0984 9.8631 39 1 8.8924 -2.6620 10.0668 40 1 10.0312 -4.4373 12.2277 41 1 8.1906 -1.3874 12.3388 42 1 6.8023 -2.2880 13.0876 43 1 4.7076 2.4072 6.6931 44 1 3.9747 1.2394 4.0340 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_12807986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:23:11 Heat of formation + Delta-G solvation = -85.487607 kcal Electronic energy + Delta-G solvation = -28883.686411 eV Core-core repulsion = 24542.599581 eV Total energy + Delta-G solvation = -4341.086830 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.74598 -41.60676 -40.47766 -39.50810 -38.10258 -37.83311 -36.56120 -35.11449 -34.23518 -33.40231 -31.34061 -30.63797 -28.87972 -26.88233 -26.68328 -24.52823 -24.07453 -23.30271 -22.37886 -22.00121 -21.36204 -20.53411 -19.75952 -18.95511 -18.52558 -18.23738 -17.72445 -17.47780 -17.27888 -16.70010 -16.55297 -16.32920 -16.08508 -16.01496 -15.74721 -15.54405 -15.07808 -14.86847 -14.58107 -14.39223 -14.23948 -13.99025 -13.87634 -13.67259 -13.57306 -13.43641 -13.40641 -12.82909 -12.75282 -12.60437 -12.41991 -12.27242 -11.89820 -11.85153 -11.28208 -11.13468 -10.98261 -10.73981 -10.68593 -10.59048 -10.15706 -9.95238 -9.01699 -5.06371 -0.79607 0.14780 0.64087 1.12717 1.39399 1.45438 1.74264 1.86492 1.91794 2.03855 2.64490 3.01648 3.28580 3.30244 3.40639 3.47624 3.59119 3.61623 3.72412 3.82812 3.87297 3.98565 4.00036 4.01627 4.22078 4.23170 4.31015 4.35679 4.40518 4.62449 4.66451 4.70121 4.77096 4.80161 4.81666 4.84798 4.89611 5.01399 5.06535 5.10591 5.14877 5.21595 5.30868 5.42393 5.47551 5.53793 5.96494 6.46341 6.59750 6.70574 6.90474 7.15474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.023 4.023 3 Si 0.769 3.231 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.025 3.975 9 C -0.110 4.110 10 C -0.050 4.050 11 C -0.180 4.180 12 C 0.552 3.448 13 O -0.567 6.567 14 N -0.709 5.709 15 C 0.134 3.866 16 C -0.108 4.108 17 H 0.127 0.873 18 C -0.162 4.162 19 C 0.072 3.928 20 H 0.104 0.896 21 O -0.587 6.587 22 C -0.130 4.130 23 C 0.160 3.840 24 O -0.497 6.497 25 C -0.153 4.153 26 O -0.175 6.175 27 H 0.400 0.600 28 H 0.138 0.862 29 H -0.298 1.298 30 H -0.277 1.277 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.394 0.606 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.409 0.591 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -7.797 2.095 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.674 3.326 4 C -0.103 4.103 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.025 3.975 9 C -0.127 4.127 10 C -0.069 4.069 11 C -0.184 4.184 12 C 0.341 3.659 13 O -0.447 6.447 14 N -0.363 5.363 15 C 0.010 3.990 16 C -0.126 4.126 17 H 0.145 0.855 18 C -0.200 4.200 19 C 0.013 3.987 20 H 0.122 0.878 21 O -0.395 6.395 22 C -0.168 4.168 23 C 0.113 3.887 24 O -0.310 6.310 25 C -0.171 4.171 26 O -0.072 6.072 27 H 0.250 0.750 28 H 0.155 0.845 29 H -0.226 1.226 30 H -0.203 1.203 31 H 0.183 0.817 32 H 0.200 0.800 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.244 0.756 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.269 0.731 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.029 -6.000 1.269 7.338 hybrid contribution 0.013 -0.926 -0.317 0.979 sum -4.017 -6.926 0.952 8.063 Atomic orbital electron populations 1.86532 1.15837 1.82075 1.50358 1.24397 0.85442 1.10816 0.92755 0.93372 0.78035 0.75863 0.85328 1.23227 1.00534 0.94316 0.92258 1.21841 1.04255 0.95736 0.98488 1.22242 1.00860 0.98960 0.96990 1.20579 1.04555 0.87980 0.91295 1.17951 0.95446 0.93915 0.90214 1.21063 0.99318 0.99360 0.92989 1.21170 0.93701 0.95090 0.96907 1.20529 1.05574 0.96248 0.96002 1.18292 0.79544 0.84394 0.83707 1.90826 1.51919 1.25660 1.76330 1.45754 1.56872 1.12419 1.21226 1.21293 0.95739 0.97773 0.84188 1.22533 0.99737 0.95056 0.95301 0.85481 1.23741 0.97832 1.00701 0.97685 1.23491 0.82860 0.98560 0.93784 0.87791 1.86501 1.25698 1.42866 1.84432 1.23105 0.98930 0.97554 0.97248 1.18507 0.92234 0.85744 0.92191 1.84731 1.45788 1.23651 1.76800 1.21583 0.99424 0.98202 0.97903 1.83924 1.57883 1.38544 1.26881 0.74974 0.84466 1.22552 1.20339 0.81676 0.80009 0.81216 0.80951 0.74573 0.93076 0.91922 0.89099 0.90901 0.75575 0.90712 0.89431 0.73094 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.09 12.88 -148.98 -1.92 -0.83 16 2 C -0.02 0.04 2.98 71.24 0.21 0.25 16 3 Si 0.77 -0.61 32.11 68.60 2.20 1.59 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.12 16 5 C -0.18 0.08 10.78 22.11 0.24 0.32 16 6 C -0.17 0.34 10.26 22.40 0.23 0.57 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.00 5.87 -20.08 -0.12 -0.12 16 9 C -0.11 0.62 9.48 22.26 0.21 0.83 16 10 C -0.05 0.29 9.47 22.24 0.21 0.50 16 11 C -0.18 -0.38 5.89 -19.97 -0.12 -0.50 16 12 C 0.55 3.16 7.75 86.63 0.67 3.83 16 13 O -0.57 -8.51 15.14 16.90 0.26 -8.25 16 14 N -0.71 1.38 5.50 -466.52 -2.57 -1.19 16 15 C 0.13 -0.06 5.51 86.38 0.48 0.42 16 16 C -0.11 0.66 3.76 -10.27 -0.04 0.62 16 17 H 0.13 -1.39 8.14 -2.39 -0.02 -1.41 16 18 C -0.16 0.84 7.46 31.12 0.23 1.07 16 19 C 0.07 -0.27 5.21 31.12 0.16 -0.11 16 20 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 21 O -0.59 -0.42 13.67 -148.98 -2.04 -2.46 16 22 C -0.13 0.35 7.47 31.12 0.23 0.58 16 23 C 0.16 0.82 6.71 22.81 0.15 0.97 16 24 O -0.50 -3.94 11.56 -69.05 -0.80 -4.74 16 25 C -0.15 -0.44 9.65 22.61 0.22 -0.22 16 26 O -0.17 -0.48 8.79 -6.03 -0.05 -0.53 16 27 H 0.40 -3.84 8.70 -74.06 -0.64 -4.49 16 28 H 0.14 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H -0.30 -2.04 7.11 99.48 0.71 -1.34 16 30 H -0.28 -1.20 7.11 99.48 0.71 -0.49 16 31 H 0.17 -0.50 8.06 -2.91 -0.02 -0.52 16 32 H 0.18 -1.51 7.24 -2.91 -0.02 -1.53 16 33 H 0.17 -2.05 6.95 -2.91 -0.02 -2.07 16 34 H 0.17 -2.40 6.37 -2.91 -0.02 -2.42 16 35 H 0.42 -3.97 6.48 -92.70 -0.60 -4.57 16 36 H 0.05 0.22 7.84 -2.39 -0.02 0.20 16 37 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.09 -0.81 8.14 -2.38 -0.02 -0.83 16 39 H 0.07 -0.05 7.90 -2.39 -0.02 -0.07 16 40 H 0.39 -2.96 9.12 -74.06 -0.68 -3.64 16 41 H 0.07 0.11 8.10 -2.38 -0.02 0.09 16 42 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.41 0.21 9.06 -74.06 -0.67 -0.46 16 44 H 0.14 0.36 7.90 -2.91 -0.02 0.33 16 Total: 0.00 -28.79 377.74 -3.07 -31.86 By element: Atomic # 1 Polarization: -23.30 SS G_CDS: -1.46 Total: -24.75 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 3.30 Total: 9.30 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.57 Total: -1.19 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -4.55 Total: -16.81 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: 2.20 Total: 1.59 kcal Total: -28.79 -3.07 -31.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_12807986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.623 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds