Wall clock time and date at job start Tue Mar 9 2021 14:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86301 * 109.46828 * 2 1 4 4 C 1.50693 * 109.47075 * 120.00027 * 2 1 3 5 5 C 1.38719 * 120.02704 * 75.30072 * 4 2 1 6 6 O 1.35898 * 120.05545 * 0.02562 * 5 4 2 7 7 C 1.42899 * 116.99584 * 180.23053 * 6 5 4 8 8 C 1.50702 * 109.46691 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00281 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99751 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00037 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47240 * 179.97438 * 11 10 8 13 13 H 1.08999 * 112.85485 * 316.19801 * 12 11 10 14 14 C 1.53786 * 113.61101 * 87.50555 * 12 11 10 15 15 C 1.53780 * 87.08017 * 139.98252 * 14 12 11 16 16 H 1.08995 * 113.69244 * 89.12585 * 15 14 12 17 17 O 1.42905 * 113.61346 * 220.02040 * 15 14 12 18 18 C 1.53775 * 87.08214 * 334.56356 * 15 14 12 19 19 C 1.38752 * 119.88551 * 180.25322 * 5 4 2 20 20 C 1.38128 * 119.94499 * 359.74245 * 19 5 4 21 21 C 1.38281 * 120.05740 * 359.97438 * 20 19 5 22 22 C 1.38163 * 120.02857 * 254.99514 * 4 2 1 23 23 H 0.96699 * 113.99498 * 299.99823 * 1 2 3 24 24 H 1.09004 * 109.46982 * 240.00516 * 2 1 3 25 25 H 1.48502 * 110.00392 * 300.00034 * 3 2 1 26 26 H 1.48496 * 109.99928 * 61.32389 * 3 2 1 27 27 H 1.08991 * 109.47595 * 300.00228 * 7 6 5 28 28 H 1.09001 * 109.47308 * 60.00938 * 7 6 5 29 29 H 0.97000 * 120.00288 * 359.97438 * 10 8 7 30 30 H 1.08996 * 109.47275 * 299.99867 * 11 10 8 31 31 H 1.09005 * 109.47061 * 59.99348 * 11 10 8 32 32 H 1.09002 * 113.61550 * 254.52871 * 14 12 11 33 33 H 1.08998 * 113.61558 * 25.43196 * 14 12 11 34 34 H 0.96695 * 113.99869 * 277.49942 * 17 15 14 35 35 H 1.08999 * 113.61874 * 270.88749 * 18 15 14 36 36 H 1.09001 * 113.61664 * 139.98054 * 18 15 14 37 37 H 1.07998 * 120.02555 * 179.72481 * 19 5 4 38 38 H 1.08005 * 119.97015 * 180.02562 * 20 19 5 39 39 H 1.07998 * 119.94637 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.97507 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8754 -2.0945 1.3043 6 8 1.3682 -2.8115 0.2673 7 6 1.3371 -4.2325 0.4150 8 6 0.7473 -4.8535 -0.8250 9 8 0.3893 -4.1487 -1.7448 10 7 0.6176 -6.1922 -0.9119 11 6 0.0438 -6.7960 -2.1171 12 6 0.0105 -8.3174 -1.9591 13 1 0.9316 -8.7194 -1.5370 14 6 -1.2629 -8.8376 -1.2714 15 6 -1.2417 -9.9954 -2.2833 16 1 -0.6643 -10.8577 -1.9502 17 8 -2.5361 -10.3503 -2.7742 18 6 -0.4632 -9.0576 -3.2210 19 6 2.3339 -2.7452 2.4408 20 6 2.8496 -2.0142 3.4932 21 6 2.9096 -0.6349 3.4146 22 6 2.4538 0.0159 2.2832 23 1 -0.3932 0.4417 0.7651 24 1 1.7924 -0.5138 -0.8901 25 1 1.5615 2.4680 -1.2085 26 1 1.5879 2.4585 1.2243 27 1 2.3510 -4.6050 0.5604 28 1 0.7262 -4.4947 1.2788 29 1 0.9042 -6.7560 -0.1764 30 1 -0.9701 -6.4233 -2.2627 31 1 0.6547 -6.5339 -2.9809 32 1 -1.1039 -9.1554 -0.2409 33 1 -2.1213 -8.1753 -1.3835 34 1 -3.0306 -10.9399 -2.1888 35 1 -1.1030 -8.4555 -3.8661 36 1 0.3413 -9.5530 -3.7645 37 1 2.2873 -3.8224 2.5025 38 1 3.2069 -2.5203 4.3778 39 1 3.3136 -0.0651 4.2384 40 1 2.5018 1.0932 2.2244 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_2989392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:24:08 Heat of formation + Delta-G solvation = -97.828469 kcal Electronic energy + Delta-G solvation = -23052.940474 eV Core-core repulsion = 19414.679118 eV Total energy + Delta-G solvation = -3638.261357 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64074 -40.87900 -40.07555 -38.54664 -37.61959 -36.62961 -35.12712 -32.77513 -31.41526 -30.26424 -27.95586 -26.73036 -26.69255 -23.86204 -23.10276 -22.62303 -21.79257 -20.47584 -19.52503 -18.81908 -18.21316 -17.93933 -17.54174 -17.17239 -16.90687 -16.47435 -16.44760 -16.03045 -15.74983 -15.65037 -15.18768 -15.03139 -14.87976 -14.61896 -14.19501 -13.76941 -13.66627 -13.46790 -13.38120 -13.05683 -12.70066 -12.53631 -12.44547 -12.13086 -11.90102 -11.87160 -11.68879 -11.31882 -11.08800 -10.72063 -10.54343 -10.26026 -9.97184 -9.21484 -4.96085 0.24002 0.42431 1.28158 1.39365 1.47059 1.53609 1.93010 2.57574 2.70531 3.27457 3.39750 3.44711 3.53455 3.62186 3.72421 3.79879 3.89405 3.96387 3.98371 4.03961 4.13190 4.18995 4.31670 4.32639 4.37681 4.54028 4.60677 4.67675 4.75138 4.78589 4.81362 4.98264 4.98527 5.10723 5.24149 5.29059 5.38220 5.43430 5.53731 5.76539 6.26618 6.44153 6.51975 6.88570 7.08161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.085 4.085 3 Si 0.785 3.215 4 C -0.165 4.165 5 C 0.128 3.872 6 O -0.315 6.315 7 C 0.039 3.961 8 C 0.509 3.491 9 O -0.575 6.575 10 N -0.706 5.706 11 C 0.133 3.867 12 C -0.106 4.106 13 H 0.128 0.872 14 C -0.161 4.161 15 C 0.072 3.928 16 H 0.105 0.895 17 O -0.587 6.587 18 C -0.132 4.132 19 C -0.211 4.211 20 C -0.074 4.074 21 C -0.154 4.154 22 C -0.088 4.088 23 H 0.381 0.619 24 H 0.095 0.905 25 H -0.308 1.308 26 H -0.264 1.264 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.422 0.578 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 -6.080 8.573 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.192 4.192 3 Si 0.688 3.312 4 C -0.166 4.166 5 C 0.083 3.917 6 O -0.228 6.228 7 C -0.039 4.039 8 C 0.295 3.705 9 O -0.454 6.454 10 N -0.360 5.360 11 C 0.010 3.990 12 C -0.125 4.125 13 H 0.146 0.854 14 C -0.199 4.199 15 C 0.013 3.987 16 H 0.123 0.877 17 O -0.395 6.395 18 C -0.170 4.170 19 C -0.230 4.230 20 C -0.092 4.092 21 C -0.172 4.172 22 C -0.106 4.106 23 H 0.230 0.770 24 H 0.113 0.887 25 H -0.237 1.237 26 H -0.190 1.190 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.442 -4.650 6.689 9.797 hybrid contribution -1.486 -0.862 0.835 1.910 sum 3.955 -5.512 7.523 10.130 Atomic orbital electron populations 1.86654 1.19041 1.80378 1.49675 1.25236 0.83229 1.12553 0.98167 0.94033 0.89801 0.70757 0.76578 1.19712 1.06783 0.91469 0.98634 1.19085 0.94203 0.91102 0.87335 1.86190 1.78301 1.18717 1.39558 1.22692 1.04636 0.79895 0.96695 1.20632 0.78405 0.83027 0.88471 1.90783 1.50349 1.62689 1.41563 1.45637 1.63859 1.05494 1.21042 1.21301 0.97962 0.92635 0.87133 1.22528 0.99930 0.91926 0.98107 0.85372 1.23735 0.97448 0.98495 1.00183 1.23485 0.84427 0.95830 0.94917 0.87745 1.86505 1.30167 1.71137 1.51702 1.23113 0.99520 0.97567 0.96759 1.21598 1.05631 1.01864 0.93886 1.21406 0.95405 0.94177 0.98215 1.21409 1.02036 0.95138 0.98621 1.21191 0.96444 1.00509 0.92427 0.77017 0.88700 1.23716 1.18975 0.85522 0.86186 0.73983 0.93116 0.92179 0.89010 0.90893 0.75532 0.90796 0.89442 0.82696 0.82779 0.83171 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -6.31 12.88 -148.98 -1.92 -8.23 16 2 C -0.08 -0.63 2.38 71.23 0.17 -0.46 16 3 Si 0.78 1.52 30.25 68.60 2.07 3.59 16 4 C -0.16 -0.80 5.27 -19.77 -0.10 -0.90 16 5 C 0.13 0.64 6.66 22.51 0.15 0.78 16 6 O -0.31 -2.76 9.00 -73.37 -0.66 -3.42 16 7 C 0.04 -0.04 5.22 71.24 0.37 0.34 16 8 C 0.51 2.74 7.91 87.66 0.69 3.43 16 9 O -0.58 -10.56 16.50 16.00 0.26 -10.30 16 10 N -0.71 1.90 5.56 -463.05 -2.57 -0.67 16 11 C 0.13 0.01 5.51 86.38 0.48 0.48 16 12 C -0.11 0.62 3.76 -10.27 -0.04 0.58 16 13 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 14 C -0.16 0.82 7.46 31.12 0.23 1.05 16 15 C 0.07 -0.25 5.21 31.12 0.16 -0.09 16 16 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 17 O -0.59 -0.60 13.67 -148.98 -2.04 -2.64 16 18 C -0.13 0.28 7.47 31.12 0.23 0.51 16 19 C -0.21 0.36 9.04 22.37 0.20 0.56 16 20 C -0.07 0.27 10.04 22.25 0.22 0.50 16 21 C -0.15 0.43 10.04 22.28 0.22 0.65 16 22 C -0.09 0.00 8.66 22.26 0.19 0.19 16 23 H 0.38 1.46 8.70 -74.06 -0.64 0.82 16 24 H 0.09 1.03 7.82 -2.39 -0.02 1.01 16 25 H -0.31 -3.18 7.11 99.48 0.71 -2.47 16 26 H -0.26 -0.62 6.68 99.48 0.66 0.04 16 27 H 0.13 -1.03 7.66 -2.39 -0.02 -1.05 16 28 H 0.12 -0.83 7.66 -2.39 -0.02 -0.85 16 29 H 0.42 -4.72 8.47 -92.71 -0.79 -5.51 16 30 H 0.05 0.25 7.84 -2.39 -0.02 0.23 16 31 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.09 -0.82 8.14 -2.39 -0.02 -0.83 16 33 H 0.07 -0.05 7.90 -2.39 -0.02 -0.06 16 34 H 0.39 -2.89 9.12 -74.06 -0.68 -3.57 16 35 H 0.07 0.16 8.10 -2.39 -0.02 0.14 16 36 H 0.09 -0.35 8.14 -2.39 -0.02 -0.36 16 37 H 0.16 -1.25 6.30 -2.91 -0.02 -1.27 16 38 H 0.15 -1.41 8.06 -2.91 -0.02 -1.44 16 39 H 0.15 -1.12 8.06 -2.91 -0.02 -1.14 16 40 H 0.15 -0.45 4.86 -2.91 -0.01 -0.47 16 Total: 0.00 -30.19 337.53 -2.68 -32.88 By element: Atomic # 1 Polarization: -17.82 SS G_CDS: -1.02 Total: -18.84 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 3.19 Total: 7.63 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -2.57 Total: -0.67 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -4.35 Total: -24.59 kcal Atomic # 14 Polarization: 1.52 SS G_CDS: 2.07 Total: 3.59 kcal Total: -30.19 -2.68 -32.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_2989392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.950 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds