Wall clock time and date at job start Tue Mar 9 2021 14:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.46995 * 2 1 4 4 C 1.50705 * 109.47151 * 119.99792 * 2 1 3 5 5 C 1.38263 * 119.94288 * 65.00696 * 4 2 1 6 6 C 1.38140 * 120.05501 * 180.02562 * 5 4 2 7 7 C 1.38729 * 119.94655 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.06055 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00158 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47008 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00164 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99720 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 180.02562 * 12 10 9 14 14 C 1.52991 * 109.47429 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.84801 * 316.19512 * 14 13 12 16 16 C 1.53781 * 113.61611 * 87.50116 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.97702 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 O 1.42891 * 113.69771 * 220.05337 * 17 16 14 20 20 C 1.53781 * 113.61529 * 184.99923 * 14 13 12 21 21 C 1.38738 * 119.88680 * 0.27548 * 7 6 5 22 22 C 1.38148 * 119.94208 * 359.47626 * 21 7 6 23 23 H 0.96697 * 113.99809 * 60.00493 * 1 2 3 24 24 H 1.09001 * 109.47360 * 240.00118 * 2 1 3 25 25 H 1.48506 * 110.00066 * 298.68127 * 3 2 1 26 26 H 1.48498 * 110.00080 * 59.99899 * 3 2 1 27 27 H 1.08003 * 119.97263 * 359.96820 * 5 4 2 28 28 H 1.08006 * 120.02994 * 179.97438 * 6 5 4 29 29 H 1.08993 * 109.47232 * 60.00091 * 9 8 7 30 30 H 1.09005 * 109.46922 * 300.00168 * 9 8 7 31 31 H 0.96996 * 120.00851 * 359.97438 * 12 10 9 32 32 H 1.08997 * 109.46666 * 59.99730 * 13 12 10 33 33 H 1.09002 * 109.46731 * 300.00370 * 13 12 10 34 34 H 1.09005 * 113.61471 * 254.53285 * 16 14 13 35 35 H 1.08996 * 113.61178 * 25.34627 * 16 14 13 36 36 H 0.96702 * 114.00033 * 277.42089 * 19 17 16 37 37 H 1.09002 * 113.61445 * 334.56787 * 20 14 13 38 38 H 1.09002 * 113.61408 * 105.38518 * 20 14 13 39 39 H 1.07999 * 120.02705 * 179.71962 * 21 7 6 40 40 H 1.07996 * 119.97056 * 180.22267 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6842 -2.0605 1.3972 6 6 2.1431 -2.7138 2.5245 7 6 2.8530 -2.0143 3.4896 8 8 3.3061 -2.6549 4.5992 9 6 4.0290 -1.8715 5.5509 10 6 4.4490 -2.7448 6.7050 11 8 4.1574 -3.9220 6.7121 12 7 5.1485 -2.2176 7.7292 13 6 5.5573 -3.0666 8.8510 14 6 6.3312 -2.2279 9.8700 15 1 7.0547 -1.5583 9.4048 16 6 5.4326 -1.5397 10.9110 17 6 6.5088 -1.8904 11.9559 18 1 7.2804 -1.1277 12.0609 19 8 5.9738 -2.3168 13.2104 20 6 6.9121 -3.0514 11.0315 21 6 3.0953 -0.6585 3.3224 22 6 2.6386 -0.0109 2.1908 23 1 -0.3933 0.4416 -0.7651 24 1 1.7924 -0.5138 -0.8900 25 1 1.5878 2.4586 -1.2243 26 1 1.5614 2.4679 1.2085 27 1 1.1310 -2.6045 0.6459 28 1 1.9494 -3.7684 2.6545 29 1 3.3924 -1.0661 5.9171 30 1 4.9137 -1.4478 5.0755 31 1 5.3821 -1.2761 7.7234 32 1 6.1939 -3.8717 8.4841 33 1 4.6730 -3.4907 9.3267 34 1 5.3158 -0.4684 10.7469 35 1 4.4827 -2.0491 11.0727 36 1 5.7183 -1.5911 13.7961 37 1 6.3673 -3.9749 11.2274 38 1 7.9896 -3.2018 10.9641 39 1 3.6438 -0.1108 4.0744 40 1 2.8301 1.0437 2.0585 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_2989410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:24:11 Heat of formation + Delta-G solvation = -98.910782 kcal Electronic energy + Delta-G solvation = -22408.382896 eV Core-core repulsion = 18770.074607 eV Total energy + Delta-G solvation = -3638.308289 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57471 -40.82168 -40.05294 -38.92647 -37.33254 -36.60729 -35.10309 -32.48224 -31.84056 -30.51737 -28.05196 -26.70273 -26.13388 -24.11440 -23.30145 -22.27464 -21.74636 -20.46325 -19.47778 -18.81381 -18.53697 -18.01623 -17.49528 -17.35232 -16.79031 -16.70002 -16.37674 -15.92446 -15.66509 -15.57551 -15.20094 -14.90008 -14.64962 -14.45954 -14.11034 -13.97503 -13.69590 -13.49628 -13.44137 -13.35442 -12.67608 -12.48186 -12.42201 -12.19642 -11.90537 -11.86065 -11.71598 -11.29772 -11.06986 -10.69484 -10.46145 -10.23084 -10.04084 -9.23333 -4.90990 0.26312 0.30734 1.32826 1.41862 1.47072 1.62296 1.96404 2.57329 2.61388 3.29593 3.40838 3.44959 3.56008 3.63588 3.78975 3.82912 3.83507 3.97422 3.99572 4.04136 4.08629 4.21307 4.29402 4.34712 4.40475 4.45445 4.63742 4.68510 4.77597 4.81034 4.84005 4.96426 5.00772 5.13090 5.15635 5.24320 5.26882 5.45823 5.50266 5.68253 6.25081 6.45153 6.60680 6.89903 7.10369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.086 4.086 3 Si 0.770 3.230 4 C -0.124 4.124 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.121 3.879 8 O -0.320 6.320 9 C 0.037 3.963 10 C 0.510 3.490 11 O -0.577 6.577 12 N -0.705 5.705 13 C 0.133 3.867 14 C -0.106 4.106 15 H 0.128 0.872 16 C -0.161 4.161 17 C 0.071 3.929 18 H 0.104 0.896 19 O -0.587 6.587 20 C -0.132 4.132 21 C -0.199 4.199 22 C -0.079 4.079 23 H 0.394 0.606 24 H 0.091 0.909 25 H -0.290 1.290 26 H -0.293 1.293 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.423 0.577 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.394 0.606 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.167 0.833 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 8.788 -0.309 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.194 4.194 3 Si 0.675 3.325 4 C -0.124 4.124 5 C -0.079 4.079 6 C -0.186 4.186 7 C 0.075 3.925 8 O -0.234 6.234 9 C -0.041 4.041 10 C 0.296 3.704 11 O -0.456 6.456 12 N -0.360 5.360 13 C 0.009 3.991 14 C -0.125 4.125 15 H 0.146 0.854 16 C -0.199 4.199 17 C 0.012 3.988 18 H 0.122 0.878 19 O -0.395 6.395 20 C -0.170 4.170 21 C -0.218 4.218 22 C -0.096 4.096 23 H 0.244 0.756 24 H 0.109 0.891 25 H -0.218 1.218 26 H -0.221 1.221 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.261 0.739 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.184 0.816 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.623 7.672 0.061 9.512 hybrid contribution -1.435 0.405 -0.180 1.502 sum 4.188 8.077 -0.120 9.099 Atomic orbital electron populations 1.86555 1.18851 1.80718 1.50962 1.25046 0.83842 1.12170 0.98391 0.94161 0.90121 0.71779 0.76409 1.19444 1.01626 0.94213 0.97127 1.20937 0.96542 0.94131 0.96337 1.20630 1.02363 1.01148 0.94426 1.19197 0.94826 0.91912 0.86524 1.86128 1.69309 1.38382 1.29548 1.22755 0.99601 0.93466 0.88241 1.20615 0.77874 0.87950 0.83976 1.90770 1.56099 1.19059 1.79683 1.45641 1.55810 1.14578 1.19970 1.21306 0.98256 0.93401 0.86113 1.22520 0.98577 0.98300 0.93087 0.85374 1.23779 0.98072 1.02087 0.95917 1.23539 0.95838 0.97326 0.82078 0.87817 1.86501 1.84578 1.38981 1.29439 1.23112 1.02085 0.97919 0.93850 1.21484 1.06388 0.92748 1.01134 1.21056 0.96042 1.00141 0.92382 0.75614 0.89063 1.21751 1.22095 0.84663 0.85380 0.85772 0.85091 0.73907 0.92092 0.92970 0.89055 0.90834 0.75549 0.90751 0.89514 0.81553 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.55 12.81 -148.98 -1.91 -3.46 16 2 C -0.09 0.04 2.79 71.24 0.20 0.24 16 3 Si 0.77 -2.44 29.85 68.60 2.05 -0.39 16 4 C -0.12 -0.32 5.39 -19.85 -0.11 -0.43 16 5 C -0.06 -0.28 9.68 22.25 0.22 -0.07 16 6 C -0.17 -1.07 9.99 22.36 0.22 -0.84 16 7 C 0.12 0.57 6.69 22.51 0.15 0.72 16 8 O -0.32 -2.22 9.67 -73.43 -0.71 -2.93 16 9 C 0.04 -0.11 5.22 71.24 0.37 0.26 16 10 C 0.51 1.72 7.91 87.66 0.69 2.41 16 11 O -0.58 -9.22 16.50 16.00 0.26 -8.95 16 12 N -0.71 3.03 5.56 -463.06 -2.57 0.45 16 13 C 0.13 -0.18 5.51 86.37 0.48 0.30 16 14 C -0.11 0.72 3.76 -10.27 -0.04 0.68 16 15 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 16 C -0.16 0.95 7.48 31.21 0.23 1.18 16 17 C 0.07 -0.29 5.23 31.21 0.16 -0.12 16 18 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 19 O -0.59 -0.30 13.67 -148.98 -2.04 -2.34 16 20 C -0.13 0.38 7.46 31.12 0.23 0.61 16 21 C -0.20 0.21 9.04 22.37 0.20 0.41 16 22 C -0.08 0.03 8.66 22.25 0.19 0.22 16 23 H 0.39 -2.09 8.74 -74.06 -0.65 -2.74 16 24 H 0.09 -0.37 7.96 -2.39 -0.02 -0.39 16 25 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 26 H -0.29 -0.91 7.05 99.48 0.70 -0.21 16 27 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 28 H 0.13 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.12 -1.13 7.65 -2.39 -0.02 -1.15 16 30 H 0.13 -1.34 7.67 -2.38 -0.02 -1.36 16 31 H 0.42 -5.37 8.47 -92.71 -0.79 -6.16 16 32 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.05 0.17 7.84 -2.39 -0.02 0.15 16 34 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 35 H 0.07 -0.12 7.89 -2.39 -0.02 -0.14 16 36 H 0.39 -3.06 9.12 -74.06 -0.68 -3.73 16 37 H 0.07 0.10 8.10 -2.39 -0.02 0.08 16 38 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.17 -1.50 6.30 -2.91 -0.02 -1.52 16 40 H 0.15 -0.75 4.86 -2.91 -0.01 -0.76 16 Total: 0.00 -29.41 338.43 -2.70 -32.11 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: -0.99 Total: -20.08 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 3.21 Total: 5.59 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -2.57 Total: 0.45 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -4.39 Total: -17.68 kcal Atomic # 14 Polarization: -2.44 SS G_CDS: 2.05 Total: -0.39 kcal Total: -29.41 -2.70 -32.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_2989410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.798 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds