Wall clock time and date at job start Tue Mar 9 2021 14:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47037 * 2 1 4 4 C 1.50697 * 109.47084 * 119.99477 * 2 1 3 5 5 C 1.38248 * 119.97634 * 245.02787 * 4 2 1 6 6 C 1.38282 * 120.11148 * 180.02562 * 5 4 2 7 7 C 1.38123 * 120.05864 * 359.95155 * 6 5 4 8 8 C 1.38748 * 119.94318 * 0.04105 * 7 6 5 9 9 O 1.35903 * 120.05538 * 180.25154 * 8 7 6 10 10 C 1.42895 * 117.00049 * 359.73131 * 9 8 7 11 11 C 1.50700 * 109.47241 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99701 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00079 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99928 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47157 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.84593 * 316.19658 * 15 14 13 17 17 C 1.53777 * 113.61467 * 87.50037 * 15 14 13 18 18 C 1.53784 * 87.08080 * 139.98066 * 17 15 14 19 19 H 1.09004 * 113.68743 * 89.12418 * 18 17 15 20 20 O 1.42896 * 113.61874 * 220.01726 * 18 17 15 21 21 C 1.53781 * 87.08159 * 334.56866 * 18 17 15 22 22 C 1.38165 * 119.97014 * 65.00117 * 4 2 1 23 23 H 0.96696 * 114.00325 * 300.00189 * 1 2 3 24 24 H 1.08995 * 109.47604 * 239.99993 * 2 1 3 25 25 H 1.48498 * 110.00134 * 178.67920 * 3 2 1 26 26 H 1.48502 * 109.99813 * 299.99677 * 3 2 1 27 27 H 1.08000 * 119.94403 * 359.97308 * 5 4 2 28 28 H 1.08004 * 119.97412 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.02778 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47202 * 299.99846 * 10 9 8 31 31 H 1.08999 * 109.47281 * 59.99918 * 10 9 8 32 32 H 0.96994 * 120.00005 * 359.97438 * 13 11 10 33 33 H 1.09000 * 109.47234 * 299.99784 * 14 13 11 34 34 H 1.08996 * 109.47129 * 60.00068 * 14 13 11 35 35 H 1.09001 * 113.61735 * 254.53269 * 17 15 14 36 36 H 1.09000 * 113.61680 * 25.43596 * 17 15 14 37 37 H 0.96702 * 113.99944 * 277.50259 * 20 18 17 38 38 H 1.08995 * 113.61713 * 270.88082 * 21 18 17 39 39 H 1.09001 * 113.69173 * 139.98745 * 21 18 17 40 40 H 1.08000 * 120.02914 * 0.04923 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6382 -0.0114 2.1913 6 6 3.1009 -0.6605 3.3212 7 6 2.8569 -2.0091 3.4931 8 6 2.1475 -2.7127 2.5305 9 8 1.9017 -4.0386 2.6997 10 6 2.4082 -4.6455 3.8901 11 6 2.0407 -6.1069 3.9044 12 8 1.4069 -6.5818 2.9858 13 7 2.4153 -6.8860 4.9384 14 6 2.0575 -8.3065 4.9526 15 6 2.6000 -8.9564 6.2271 16 1 3.6214 -8.6520 6.4557 17 6 1.6422 -8.8553 7.4258 18 6 2.0504 -10.2967 7.7732 19 1 2.9210 -10.3600 8.4260 20 8 0.9621 -11.1082 8.2193 21 6 2.3835 -10.4779 6.2829 22 6 1.6845 -2.0594 1.3978 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5138 -0.8899 25 1 3.5345 1.7704 0.0322 26 1 1.5615 2.4678 -1.2086 27 1 2.8301 1.0431 2.0587 28 1 3.6533 -0.1124 4.0702 29 1 3.2181 -2.5154 4.3760 30 1 3.4930 -4.5431 3.9169 31 1 1.9752 -4.1538 4.7612 32 1 2.9219 -6.5061 5.6732 33 1 0.9726 -8.4083 4.9259 34 1 2.4902 -8.7989 4.0817 35 1 1.9512 -8.1223 8.1711 36 1 0.5949 -8.7548 7.1408 37 1 0.7478 -10.9985 9.1559 38 1 1.5390 -10.8210 5.6853 39 1 3.2908 -11.0549 6.1039 40 1 1.1325 -2.6050 0.6468 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:24:43 Heat of formation + Delta-G solvation = -101.131976 kcal Electronic energy + Delta-G solvation = -22488.395023 eV Core-core repulsion = 18849.990416 eV Total energy + Delta-G solvation = -3638.404607 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60067 -40.85770 -40.09112 -38.95445 -37.24978 -36.62285 -35.12725 -32.48476 -31.80758 -30.21629 -27.95778 -26.77427 -26.69446 -23.68417 -23.52209 -22.53257 -21.69097 -20.47421 -19.32982 -18.84839 -18.19911 -17.71151 -17.52913 -17.30065 -16.99717 -16.61678 -16.37357 -16.20920 -15.88614 -15.52142 -15.12137 -14.89157 -14.79129 -14.57829 -14.19615 -14.02164 -13.69894 -13.45491 -13.36896 -12.94422 -12.68664 -12.61073 -12.44240 -12.15121 -12.02333 -11.88072 -11.69065 -11.31015 -11.09631 -10.71212 -10.49636 -10.26022 -9.94538 -9.29559 -4.99284 0.19927 0.38169 1.27271 1.38639 1.47139 1.65796 1.97398 2.56062 2.66590 3.28264 3.39775 3.51409 3.54613 3.63011 3.67702 3.80357 3.84899 3.98501 3.98942 4.05161 4.12539 4.19381 4.24450 4.32736 4.34125 4.48524 4.61208 4.63543 4.75900 4.79936 4.82338 4.97025 4.99422 5.11504 5.23507 5.24890 5.36376 5.44041 5.44434 5.69176 6.25172 6.43381 6.74552 6.89469 7.07601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.088 4.088 3 Si 0.797 3.203 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.069 4.069 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.326 6.326 10 C 0.040 3.960 11 C 0.509 3.491 12 O -0.578 6.578 13 N -0.705 5.705 14 C 0.133 3.867 15 C -0.107 4.107 16 H 0.128 0.872 17 C -0.160 4.160 18 C 0.071 3.929 19 H 0.104 0.896 20 O -0.587 6.587 21 C -0.132 4.132 22 C -0.153 4.153 23 H 0.396 0.604 24 H 0.099 0.901 25 H -0.280 1.280 26 H -0.302 1.302 27 H 0.152 0.848 28 H 0.165 0.835 29 H 0.162 0.838 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.423 0.577 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.395 0.605 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 4.284 11.207 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.196 4.196 3 Si 0.702 3.298 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.087 4.087 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.239 6.239 10 C -0.038 4.038 11 C 0.295 3.705 12 O -0.457 6.457 13 N -0.359 5.359 14 C 0.009 3.991 15 C -0.125 4.125 16 H 0.146 0.854 17 C -0.198 4.198 18 C 0.013 3.987 19 H 0.122 0.878 20 O -0.395 6.395 21 C -0.170 4.170 22 C -0.172 4.172 23 H 0.246 0.754 24 H 0.116 0.884 25 H -0.207 1.207 26 H -0.230 1.230 27 H 0.169 0.831 28 H 0.183 0.817 29 H 0.180 0.820 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.667 3.866 8.862 11.207 hybrid contribution -0.028 -0.807 0.230 0.840 sum 5.639 3.059 9.093 11.128 Atomic orbital electron populations 1.86481 1.17392 1.82333 1.50444 1.25453 0.85311 1.11995 0.96852 0.93550 0.77704 0.73953 0.84567 1.20211 0.98268 0.92995 0.97088 1.21223 1.00616 1.00610 0.94812 1.21362 0.96685 0.93488 0.97172 1.21647 1.03489 0.96411 1.00456 1.19208 0.96340 0.82279 0.95409 1.86125 1.74521 1.21094 1.42200 1.22725 1.02598 0.89854 0.88623 1.20648 0.79007 0.88782 0.82087 1.90773 1.41062 1.76090 1.37804 1.45633 1.57358 1.09832 1.23106 1.21310 0.99527 0.79859 0.98403 1.22527 1.01253 0.95386 0.93354 0.85419 1.23731 0.99610 0.98185 0.98238 1.23488 0.89892 0.89827 0.95517 0.87813 1.86503 1.53183 1.67176 1.32654 1.23118 1.02441 0.95782 0.95702 1.20310 1.04378 0.94724 0.97749 0.75432 0.88379 1.20700 1.23031 0.83055 0.81702 0.82028 0.85532 0.85448 0.73884 0.92897 0.92263 0.88936 0.90764 0.75527 0.90762 0.89554 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.06 12.83 -148.98 -1.91 -3.97 16 2 C -0.09 -0.20 2.80 71.24 0.20 0.00 16 3 Si 0.80 -1.56 29.80 68.60 2.04 0.49 16 4 C -0.09 -0.22 5.35 -19.88 -0.11 -0.33 16 5 C -0.16 0.39 8.67 22.28 0.19 0.58 16 6 C -0.07 0.33 10.04 22.25 0.22 0.56 16 7 C -0.20 0.58 9.04 22.36 0.20 0.78 16 8 C 0.11 0.54 6.69 22.51 0.15 0.69 16 9 O -0.33 -2.57 9.67 -73.42 -0.71 -3.28 16 10 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 11 C 0.51 2.01 7.91 87.66 0.69 2.70 16 12 O -0.58 -9.76 16.50 16.00 0.26 -9.49 16 13 N -0.70 2.79 5.56 -463.06 -2.57 0.22 16 14 C 0.13 -0.13 5.51 86.38 0.48 0.34 16 15 C -0.11 0.71 3.75 -10.27 -0.04 0.67 16 16 H 0.13 -1.47 8.14 -2.39 -0.02 -1.48 16 17 C -0.16 0.97 7.46 31.12 0.23 1.20 16 18 C 0.07 -0.29 5.21 31.12 0.16 -0.13 16 19 H 0.10 -0.86 8.14 -2.38 -0.02 -0.88 16 20 O -0.59 -0.25 13.67 -148.98 -2.04 -2.29 16 21 C -0.13 0.36 7.47 31.12 0.23 0.59 16 22 C -0.15 -1.13 9.62 22.37 0.22 -0.92 16 23 H 0.40 -2.05 8.70 -74.06 -0.64 -2.69 16 24 H 0.10 0.46 7.96 -2.39 -0.02 0.44 16 25 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 26 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 27 H 0.15 -1.16 4.90 -2.91 -0.01 -1.18 16 28 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 29 H 0.16 -1.64 6.30 -2.91 -0.02 -1.66 16 30 H 0.13 -1.19 7.67 -2.39 -0.02 -1.21 16 31 H 0.13 -1.21 7.65 -2.39 -0.02 -1.22 16 32 H 0.42 -5.31 8.47 -92.71 -0.79 -6.09 16 33 H 0.05 0.19 7.84 -2.39 -0.02 0.17 16 34 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 36 H 0.07 -0.13 7.90 -2.39 -0.02 -0.15 16 37 H 0.39 -3.12 9.12 -74.06 -0.68 -3.79 16 38 H 0.07 0.11 8.10 -2.39 -0.02 0.10 16 39 H 0.09 -0.38 8.14 -2.39 -0.02 -0.39 16 40 H 0.11 1.23 8.06 -2.91 -0.02 1.20 16 Total: 0.00 -31.07 338.43 -2.70 -33.77 By element: Atomic # 1 Polarization: -21.47 SS G_CDS: -0.98 Total: -22.45 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 3.21 Total: 7.01 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -2.57 Total: 0.22 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -4.39 Total: -19.04 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.04 Total: 0.49 kcal Total: -31.07 -2.70 -33.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.363 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds