Wall clock time and date at job start Tue Mar 9 2021 14:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 122.44577 * 2 1 4 4 C 1.50694 * 124.52207 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47383 * 30.00101 * 4 3 2 6 6 Si 1.86302 * 109.47236 * 150.00098 * 4 3 2 7 7 S 1.70617 * 110.95113 * 179.70409 * 3 2 1 8 8 C 1.75823 * 91.56441 * 0.35444 * 7 3 2 9 9 C 1.46586 * 125.45833 * 179.91045 * 8 7 3 10 10 O 1.21700 * 120.00013 * 179.41624 * 9 8 7 11 11 N 1.34777 * 119.99915 * 359.69930 * 9 8 7 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47030 * 179.97438 * 12 11 9 14 14 H 1.09005 * 112.84820 * 314.66244 * 13 12 11 15 15 C 1.53781 * 113.61642 * 85.86002 * 13 12 11 16 16 C 1.53954 * 87.01973 * 139.95024 * 15 13 12 17 17 H 1.09005 * 113.61117 * 89.19726 * 16 15 13 18 18 O 1.42898 * 113.67135 * 220.06697 * 16 15 13 19 19 C 1.53783 * 87.11436 * 334.63983 * 16 15 13 20 20 C 1.36648 * 109.08756 * 359.65000 * 8 7 3 21 21 H 1.09002 * 109.46747 * 269.99531 * 1 2 3 22 22 H 1.08997 * 109.47589 * 29.99736 * 1 2 3 23 23 H 1.08998 * 109.46887 * 150.00036 * 1 2 3 24 24 H 1.09003 * 109.47480 * 270.00057 * 4 3 2 25 25 H 0.96701 * 114.00110 * 59.99689 * 5 4 3 26 26 H 1.48503 * 110.00425 * 180.02562 * 6 4 3 27 27 H 1.48508 * 109.99947 * 301.32076 * 6 4 3 28 28 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 29 29 H 1.09004 * 109.47074 * 299.99559 * 12 11 9 30 30 H 1.09004 * 109.47714 * 59.99650 * 12 11 9 31 31 H 1.08998 * 113.61494 * 254.53145 * 15 13 12 32 32 H 1.08998 * 113.61227 * 25.43703 * 15 13 12 33 33 H 0.96700 * 113.99847 * 277.56860 * 18 16 15 34 34 H 1.08995 * 113.61176 * 270.80901 * 19 16 15 35 35 H 1.08999 * 113.69205 * 139.91407 * 19 16 15 36 36 H 1.07996 * 123.35640 * 180.24314 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5161 0.0006 5 8 0.3755 2.4979 0.6747 6 14 2.7926 3.6826 0.8786 7 16 3.8969 0.7893 0.0082 8 6 3.5938 -0.9426 0.0008 9 6 4.6232 -1.9861 0.0013 10 8 4.3003 -3.1594 0.0065 11 7 5.9274 -1.6460 0.0017 12 6 6.9562 -2.6889 0.0015 13 6 8.3413 -2.0389 0.0014 14 1 8.4244 -1.2198 -0.7131 15 6 8.8560 -1.6850 1.4067 16 6 10.2390 -2.1693 0.9345 17 1 10.8427 -1.3861 0.4761 18 8 10.9539 -2.9145 1.9223 19 6 9.4965 -3.0504 -0.0840 20 6 2.2447 -1.1601 0.0005 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.4928 2.8508 -1.0270 25 1 0.4266 2.2092 1.5961 26 1 2.2224 5.0537 0.8866 27 1 3.0204 3.2196 2.2712 28 1 6.1848 -0.7108 0.0012 29 1 6.8455 -3.3087 0.8914 30 1 6.8459 -3.3083 -0.8886 31 1 8.8184 -0.6188 1.6298 32 1 8.4247 -2.2994 2.1970 33 1 11.4228 -2.3658 2.5658 34 1 9.2408 -4.0386 0.2980 35 1 9.9744 -3.0857 -1.0631 36 1 1.8020 -2.1451 0.0002 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_6739946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:25:05 Heat of formation + Delta-G solvation = -64.062638 kcal Electronic energy + Delta-G solvation = -19755.050244 eV Core-core repulsion = 16526.087522 eV Total energy + Delta-G solvation = -3228.962722 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15082 -40.27630 -39.72729 -37.46289 -36.60337 -35.10878 -32.29365 -30.25234 -29.24772 -26.71337 -26.17530 -24.49620 -23.18460 -21.93245 -20.59189 -20.19190 -19.39419 -18.43666 -17.86673 -17.27302 -17.02461 -16.72067 -16.38578 -16.17893 -15.86657 -15.40539 -15.04655 -14.78695 -14.51260 -14.43908 -13.91655 -13.59224 -13.52979 -13.42587 -13.14560 -12.98755 -12.66794 -12.45786 -12.38591 -12.24311 -11.86655 -11.83974 -11.35139 -11.26617 -10.89022 -10.69436 -10.31535 -9.68042 -9.37705 -5.12318 -0.67919 0.29783 0.70211 1.06617 1.31464 1.54836 1.88288 1.95770 2.04427 3.23257 3.30578 3.46082 3.56195 3.59734 3.75772 3.82749 4.01326 4.08928 4.21328 4.27860 4.34750 4.49872 4.56295 4.63187 4.76139 4.80939 4.82189 4.84000 4.87749 4.98826 5.01723 5.12626 5.24677 5.37119 5.42732 5.45727 6.31210 6.35948 6.91734 6.98898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.109 4.109 3 C -0.238 4.238 4 C -0.039 4.039 5 O -0.530 6.530 6 Si 0.740 3.260 7 S 0.271 5.729 8 C -0.288 4.288 9 C 0.587 3.413 10 O -0.576 6.576 11 N -0.710 5.710 12 C 0.132 3.868 13 C -0.111 4.111 14 H 0.126 0.874 15 C -0.163 4.163 16 C 0.073 3.927 17 H 0.104 0.896 18 O -0.586 6.586 19 C -0.129 4.129 20 C -0.061 4.061 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.142 0.858 25 H 0.387 0.613 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.413 0.587 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 7.046 -0.825 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.358 4.358 4 C -0.149 4.149 5 O -0.338 6.338 6 Si 0.641 3.359 7 S 0.540 5.460 8 C -0.408 4.408 9 C 0.374 3.626 10 O -0.457 6.457 11 N -0.361 5.361 12 C 0.009 3.991 13 C -0.129 4.129 14 H 0.144 0.856 15 C -0.200 4.200 16 C 0.014 3.986 17 H 0.122 0.878 18 O -0.394 6.394 19 C -0.167 4.167 20 C -0.095 4.095 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.159 0.841 25 H 0.237 0.763 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.250 0.750 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.080 7.379 -1.045 9.019 hybrid contribution -2.054 -0.963 1.105 2.524 sum 3.026 6.415 0.060 7.094 Atomic orbital electron populations 1.20607 0.88317 1.03166 1.02990 1.18735 0.98828 0.90530 1.04069 1.24700 0.99647 1.00922 1.10498 1.24682 0.91173 0.94561 1.04516 1.86621 1.28051 1.89195 1.29944 0.94707 0.83288 0.76713 0.81199 1.82278 1.01414 0.95172 1.67112 1.24619 0.97568 0.98813 1.19782 1.17236 0.82609 0.87080 0.75678 1.90832 1.82463 1.20269 1.52164 1.45726 1.04510 1.11279 1.74626 1.21381 0.85922 0.89916 1.01879 1.22556 0.91321 0.99873 0.99189 0.85617 1.23780 0.97049 1.02810 0.96391 1.23505 0.90932 0.94448 0.89686 0.87785 1.86500 1.69561 1.38857 1.44518 1.23089 0.95396 0.98450 0.99727 1.20754 0.91460 1.00182 0.97118 0.90661 0.89908 0.92032 0.84050 0.76265 1.20092 1.20037 0.75004 0.92459 0.91643 0.89046 0.90709 0.75552 0.90560 0.89391 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.03 8.67 71.24 0.62 0.64 16 2 C -0.11 -0.16 5.75 -21.05 -0.12 -0.28 16 3 C -0.24 0.44 5.54 24.68 0.14 0.58 16 4 C -0.04 0.16 2.76 71.23 0.20 0.36 16 5 O -0.53 1.06 9.85 -148.98 -1.47 -0.41 16 6 Si 0.74 -3.84 31.30 68.60 2.15 -1.69 16 7 S 0.27 -1.17 19.78 -56.49 -1.12 -2.29 16 8 C -0.29 -1.03 6.45 24.08 0.16 -0.87 16 9 C 0.59 4.23 7.78 86.42 0.67 4.90 16 10 O -0.58 -9.40 16.84 -4.35 -0.07 -9.48 16 11 N -0.71 0.06 5.55 -467.17 -2.59 -2.54 16 12 C 0.13 0.02 5.50 86.38 0.47 0.50 16 13 C -0.11 0.61 3.75 -10.26 -0.04 0.58 16 14 H 0.13 -1.25 8.14 -2.38 -0.02 -1.27 16 15 C -0.16 0.83 7.48 31.18 0.23 1.07 16 16 C 0.07 -0.28 5.21 31.18 0.16 -0.12 16 17 H 0.10 -0.83 8.14 -2.38 -0.02 -0.85 16 18 O -0.59 -0.27 13.67 -148.98 -2.04 -2.30 16 19 C -0.13 0.34 7.48 31.12 0.23 0.58 16 20 C -0.06 -0.29 9.80 21.72 0.21 -0.08 16 21 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 22 H 0.08 0.02 6.42 -2.39 -0.02 0.00 16 23 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 24 H 0.14 -0.92 7.96 -2.39 -0.02 -0.94 16 25 H 0.39 -2.51 8.66 -74.06 -0.64 -3.15 16 26 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 27 H -0.27 0.11 7.11 99.48 0.71 0.82 16 28 H 0.41 -2.66 7.59 -92.71 -0.70 -3.36 16 29 H 0.06 0.22 7.88 -2.38 -0.02 0.20 16 30 H 0.07 0.15 8.14 -2.39 -0.02 0.14 16 31 H 0.09 -0.80 8.14 -2.39 -0.02 -0.81 16 32 H 0.07 -0.08 7.92 -2.39 -0.02 -0.10 16 33 H 0.39 -3.07 9.12 -74.06 -0.68 -3.75 16 34 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 35 H 0.09 -0.40 8.14 -2.39 -0.02 -0.41 16 36 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 Total: 0.00 -20.16 316.06 -3.06 -23.22 By element: Atomic # 1 Polarization: -11.52 SS G_CDS: -0.86 Total: -12.37 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 2.94 Total: 7.85 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -2.59 Total: -2.54 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -3.58 Total: -12.19 kcal Atomic # 14 Polarization: -3.84 SS G_CDS: 2.15 Total: -1.69 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -1.12 Total: -2.29 kcal Total: -20.16 -3.06 -23.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_6739946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.840 kcal (2) G-P(sol) polarization free energy of solvation -20.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds