Wall clock time and date at job start Tue Mar 9 2021 14:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46773 * 2 1 4 4 C 1.50697 * 109.47307 * 120.00278 * 2 1 3 5 5 C 1.38240 * 119.93871 * 245.02690 * 4 2 1 6 6 C 1.38197 * 120.07552 * 179.76709 * 5 4 2 7 7 C 1.38660 * 119.95584 * 0.45972 * 6 5 4 8 8 O 1.35923 * 120.05870 * 179.79338 * 7 6 5 9 9 C 1.42902 * 117.00054 * 359.72273 * 8 7 6 10 10 C 1.52998 * 109.47042 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.46810 * 180.02562 * 10 9 8 12 12 C 1.34816 * 126.59327 * 124.97437 * 11 10 9 13 13 C 1.36602 * 106.83847 * 179.97438 * 12 11 10 14 14 C 1.47523 * 125.76914 * 180.26109 * 13 12 11 15 15 O 1.21593 * 119.99812 * 359.71778 * 14 13 12 16 16 N 1.34778 * 119.99695 * 179.71894 * 14 13 12 17 17 C 1.46496 * 119.99759 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46891 * 179.97438 * 17 16 14 19 19 H 1.09000 * 112.85212 * 45.33962 * 18 17 16 20 20 C 1.53784 * 113.61323 * 176.52688 * 18 17 16 21 21 C 1.53773 * 87.08114 * 139.98291 * 20 18 17 22 22 H 1.09004 * 113.61733 * 89.20395 * 21 20 18 23 23 O 1.42900 * 113.61835 * 220.01927 * 21 20 18 24 24 C 1.53777 * 113.61992 * 274.13419 * 18 17 16 25 25 N 1.34404 * 108.45542 * 359.97438 * 13 12 11 26 26 N 1.28755 * 109.52541 * 0.02562 * 25 13 12 27 27 C 1.38861 * 119.88151 * 359.51577 * 7 6 5 28 28 Cl 1.73600 * 120.03940 * 180.27381 * 27 7 6 29 29 C 1.38213 * 119.92173 * 0.25321 * 27 7 6 30 30 H 0.96699 * 114.00286 * 299.99363 * 1 2 3 31 31 H 1.09002 * 109.46739 * 240.00333 * 2 1 3 32 32 H 1.48508 * 109.99876 * 178.68041 * 3 2 1 33 33 H 1.48497 * 110.00212 * 300.00135 * 3 2 1 34 34 H 1.08000 * 119.95829 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.02004 * 180.25438 * 6 5 4 36 36 H 1.08994 * 109.46826 * 59.99820 * 9 8 7 37 37 H 1.09001 * 109.46838 * 299.99830 * 9 8 7 38 38 H 1.08997 * 109.47600 * 59.99509 * 10 9 8 39 39 H 1.09001 * 109.46774 * 299.99391 * 10 9 8 40 40 H 1.07999 * 126.58373 * 0.03979 * 12 11 10 41 41 H 0.96999 * 120.00018 * 359.97438 * 16 14 13 42 42 H 1.08996 * 109.47514 * 299.99896 * 17 16 14 43 43 H 1.09003 * 109.47038 * 59.99991 * 17 16 14 44 44 H 1.08998 * 113.61851 * 254.53394 * 20 18 17 45 45 H 1.09008 * 113.61184 * 25.35086 * 20 18 17 46 46 H 0.96703 * 114.00937 * 179.97438 * 23 21 20 47 47 H 1.09004 * 113.61200 * 334.57410 * 24 18 17 48 48 H 1.09000 * 113.61542 * 105.46705 * 24 18 17 49 49 H 1.08004 * 119.97450 * 179.97438 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6382 -0.0110 2.1907 6 6 3.0960 -0.6586 3.3224 7 6 2.8544 -2.0136 3.4902 8 8 3.3074 -2.6536 4.6005 9 6 4.0308 -1.8697 5.5514 10 6 4.4570 -2.7555 6.7238 11 7 5.1982 -1.9517 7.6989 12 6 4.9191 -1.8218 9.0115 13 6 5.8624 -0.9842 9.5356 14 6 5.9519 -0.5614 10.9461 15 8 5.1357 -0.9615 11.7537 16 7 6.9385 0.2683 11.3394 17 6 7.0278 0.6878 12.7402 18 6 8.2277 1.6202 12.9178 19 1 8.2934 2.3789 12.1379 20 6 8.3621 2.1870 14.3411 21 6 9.8788 1.9797 14.1959 22 1 10.3976 2.8368 13.7666 23 8 10.5058 1.4891 15.3826 24 6 9.5516 0.8796 13.1698 25 7 6.6987 -0.6155 8.5501 26 7 6.3348 -1.1704 7.4467 27 6 2.1437 -2.7144 2.5248 28 17 1.8327 -4.4094 2.7341 29 6 1.6840 -2.0607 1.3971 30 1 -0.3934 0.4416 0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 3.5345 1.7704 0.0321 33 1 1.5613 2.4679 -1.2084 34 1 2.8299 1.0435 2.0579 35 1 3.6446 -0.1104 4.0740 36 1 3.3946 -1.0637 5.9170 37 1 4.9157 -1.4469 5.0756 38 1 5.0933 -3.5614 6.3579 39 1 3.5724 -3.1787 7.1997 40 1 4.1065 -2.2909 9.5462 41 1 7.5898 0.5872 10.6952 42 1 6.1147 1.2125 13.0214 43 1 7.1528 -0.1896 13.3749 44 1 8.0704 3.2340 14.4235 45 1 7.9054 1.5589 15.1061 46 1 11.4598 1.3562 15.2974 47 1 9.4221 -0.1073 13.6141 48 1 10.2189 0.8725 12.3080 49 1 1.1315 -2.6050 0.6454 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_7143556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:25:08 Heat of formation + Delta-G solvation = -5.381680 kcal Electronic energy + Delta-G solvation = -34070.863355 eV Core-core repulsion = 29029.241988 eV Total energy + Delta-G solvation = -5041.621367 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.128 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.36302 -41.52304 -40.85202 -39.92452 -39.45410 -37.75514 -37.10618 -36.60349 -36.14657 -34.99550 -32.54871 -32.10878 -31.97102 -30.79940 -28.86058 -26.73763 -26.68702 -25.75909 -24.81988 -23.97152 -23.08968 -22.84553 -22.44950 -21.56637 -20.49825 -19.80233 -19.10859 -18.45545 -18.30628 -17.70888 -17.39958 -17.23142 -17.22426 -16.97373 -16.75434 -16.42242 -16.07277 -16.01373 -15.89913 -15.64633 -15.45497 -15.07840 -15.02632 -14.85755 -14.72779 -14.58046 -14.49663 -13.86185 -13.72211 -13.55777 -13.46891 -13.41399 -13.18596 -12.67263 -12.58784 -12.54861 -12.42893 -12.32593 -12.18975 -12.16836 -11.97753 -11.84667 -11.75446 -11.49087 -11.35821 -11.26493 -10.69838 -10.53008 -10.47615 -10.09857 -10.04569 -9.35681 -5.01896 -0.04287 0.01466 0.06146 0.52720 0.71463 1.05147 1.32522 1.62741 1.95086 1.98066 2.04983 2.16402 2.37039 3.08446 3.20769 3.31188 3.45546 3.47199 3.52631 3.60561 3.61822 3.71015 3.73224 3.77068 3.83289 3.87898 3.98008 4.00757 4.04566 4.08725 4.23026 4.28467 4.37050 4.42113 4.43494 4.50966 4.61690 4.64543 4.70474 4.80644 4.81798 4.82418 4.86324 4.97317 5.02649 5.15596 5.20244 5.24707 5.30389 5.44382 5.47032 6.00495 6.33755 6.76696 6.79331 6.90106 7.06372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.070 4.070 3 Si 0.777 3.223 4 C -0.144 4.144 5 C -0.067 4.067 6 C -0.188 4.188 7 C 0.137 3.863 8 O -0.306 6.306 9 C 0.046 3.954 10 C 0.123 3.877 11 N -0.350 5.350 12 C 0.119 3.881 13 C -0.123 4.123 14 C 0.604 3.396 15 O -0.569 6.569 16 N -0.705 5.705 17 C 0.133 3.867 18 C -0.112 4.112 19 H 0.118 0.882 20 C -0.125 4.125 21 C 0.072 3.928 22 H 0.100 0.900 23 O -0.584 6.584 24 C -0.163 4.163 25 N -0.215 5.215 26 N -0.082 5.082 27 C -0.082 4.082 28 Cl -0.063 7.063 29 C -0.054 4.054 30 H 0.396 0.604 31 H 0.108 0.892 32 H -0.283 1.283 33 H -0.301 1.301 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.150 0.850 40 H 0.237 0.763 41 H 0.416 0.584 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.394 0.606 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 3.839 0.108 3.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.180 4.180 3 Si 0.683 3.317 4 C -0.145 4.145 5 C -0.084 4.084 6 C -0.207 4.207 7 C 0.091 3.909 8 O -0.219 6.219 9 C -0.030 4.030 10 C 0.003 3.997 11 N -0.135 5.135 12 C -0.038 4.038 13 C -0.262 4.262 14 C 0.388 3.612 15 O -0.448 6.448 16 N -0.356 5.356 17 C 0.010 3.990 18 C -0.130 4.130 19 H 0.136 0.864 20 C -0.163 4.163 21 C 0.013 3.987 22 H 0.118 0.882 23 O -0.393 6.393 24 C -0.201 4.201 25 N -0.089 5.089 26 N -0.062 5.062 27 C -0.109 4.109 28 Cl -0.034 7.034 29 C -0.073 4.073 30 H 0.246 0.754 31 H 0.125 0.875 32 H -0.209 1.209 33 H -0.229 1.229 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.254 0.746 41 H 0.253 0.747 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.244 0.756 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.816 3.946 -1.062 4.167 hybrid contribution 0.286 -1.166 -0.157 1.211 sum 1.102 2.780 -1.218 3.229 Atomic orbital electron populations 1.86490 1.17143 1.82164 1.50543 1.25154 0.85363 1.10748 0.96706 0.93841 0.77869 0.74848 0.85177 1.20293 1.02042 0.93818 0.98362 1.21167 0.94685 1.00553 0.92023 1.21432 1.05653 0.92266 1.01332 1.18687 0.94411 0.91275 0.86560 1.86002 1.68899 1.38008 1.28949 1.22990 0.97126 0.94142 0.88748 1.21917 0.98413 0.91708 0.87710 1.50335 1.21320 1.33941 1.07937 1.23907 0.99884 0.95891 0.84123 1.21441 1.00246 1.09036 0.95486 1.16902 0.81062 0.78344 0.84852 1.90825 1.42409 1.57748 1.53835 1.45732 1.30241 1.47802 1.11785 1.21382 0.98774 0.97823 0.81002 1.22525 0.93538 0.98361 0.98618 0.86365 1.23073 0.94671 1.02507 0.96064 1.23499 0.93758 0.96221 0.85201 0.88188 1.86492 1.27652 1.88019 1.37104 1.23772 0.97295 0.98956 1.00063 1.74610 1.21225 1.16187 0.96854 1.81984 0.99448 1.08229 1.16556 1.20365 1.06560 0.86579 0.97441 1.98385 1.94638 1.13121 1.97271 1.20869 0.97040 0.94265 0.95115 0.75384 0.87451 1.20936 1.22905 0.82369 0.82096 0.89505 0.90014 0.86078 0.83256 0.74646 0.74718 0.91178 0.92050 0.89422 0.90076 0.75612 0.90398 0.89874 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.98 12.83 -148.98 -1.91 -0.93 16 2 C -0.07 0.20 2.80 71.24 0.20 0.40 16 3 Si 0.78 -3.65 29.80 68.60 2.04 -1.60 16 4 C -0.14 0.36 5.35 -19.85 -0.11 0.26 16 5 C -0.07 0.35 8.66 22.26 0.19 0.54 16 6 C -0.19 0.87 9.04 22.36 0.20 1.07 16 7 C 0.14 -0.12 6.68 22.52 0.15 0.03 16 8 O -0.31 0.83 9.60 -92.69 -0.89 -0.06 16 9 C 0.05 -0.36 4.95 71.98 0.36 0.00 16 10 C 0.12 -1.22 6.91 86.38 0.60 -0.62 16 11 N -0.35 1.53 3.69 -347.09 -1.28 0.24 16 12 C 0.12 -0.44 11.27 83.85 0.95 0.50 16 13 C -0.12 -0.25 6.99 40.82 0.29 0.04 16 14 C 0.60 2.89 7.82 86.69 0.68 3.56 16 15 O -0.57 -6.04 16.86 -4.01 -0.07 -6.11 16 16 N -0.70 -0.43 5.55 -466.29 -2.59 -3.02 16 17 C 0.13 -0.03 5.50 86.38 0.47 0.45 16 18 C -0.11 0.47 3.75 -10.27 -0.04 0.43 16 19 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 20 C -0.13 0.27 7.48 31.12 0.23 0.51 16 21 C 0.07 -0.18 5.21 31.17 0.16 -0.02 16 22 H 0.10 -0.61 8.14 -2.38 -0.02 -0.63 16 23 O -0.58 -0.71 13.67 -148.98 -2.04 -2.75 16 24 C -0.16 0.54 7.48 31.18 0.23 0.77 16 25 N -0.21 -0.78 12.04 -49.99 -0.60 -1.38 16 26 N -0.08 -0.17 13.65 37.02 0.51 0.33 16 27 C -0.08 -0.14 6.33 22.41 0.14 0.01 16 28 Cl -0.06 -0.21 28.51 -2.72 -0.08 -0.29 16 29 C -0.05 -0.02 9.46 22.27 0.21 0.19 16 30 H 0.40 -3.95 8.70 -74.06 -0.64 -4.60 16 31 H 0.11 -0.16 7.96 -2.39 -0.02 -0.18 16 32 H -0.28 0.06 7.11 99.48 0.71 0.77 16 33 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 34 H 0.16 -1.62 4.90 -2.91 -0.01 -1.63 16 35 H 0.16 -1.45 6.30 -2.91 -0.02 -1.47 16 36 H 0.09 -0.85 7.65 -2.39 -0.02 -0.86 16 37 H 0.08 -0.56 7.67 -2.39 -0.02 -0.58 16 38 H 0.12 -1.26 8.14 -2.39 -0.02 -1.28 16 39 H 0.15 -2.26 8.08 -2.39 -0.02 -2.28 16 40 H 0.24 -2.41 8.06 -2.91 -0.02 -2.43 16 41 H 0.42 -0.95 8.16 -92.71 -0.76 -1.70 16 42 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.06 0.16 7.87 -2.39 -0.02 0.14 16 44 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.08 0.06 8.10 -2.38 -0.02 0.04 16 46 H 0.39 -2.68 9.12 -74.06 -0.68 -3.35 16 47 H 0.08 0.00 7.92 -2.38 -0.02 -0.02 16 48 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 Total: 0.00 -26.54 433.49 -2.98 -29.52 By element: Atomic # 1 Polarization: -21.08 SS G_CDS: -0.99 Total: -22.07 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 4.92 Total: 8.12 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -3.97 Total: -3.82 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -4.91 Total: -9.85 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.04 Total: -1.60 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.29 kcal Total: -26.54 -2.98 -29.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_7143556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.137 kcal (2) G-P(sol) polarization free energy of solvation -26.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds