Wall clock time and date at job start Tue Mar 9 2021 14:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34245 * 126.49937 * 105.02708 * 4 2 1 6 6 N 1.36834 * 109.93974 * 179.97438 * 5 4 2 7 7 C 1.46496 * 125.06401 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47065 * 264.97809 * 7 6 5 9 9 O 1.21283 * 120.00192 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99464 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99411 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46704 * 179.97438 * 11 10 8 13 13 H 1.08999 * 112.85112 * 45.33489 * 12 11 10 14 14 C 1.53780 * 113.61191 * 176.52994 * 12 11 10 15 15 C 1.53784 * 87.08219 * 139.98307 * 14 12 11 16 16 H 1.08994 * 113.61614 * 89.11639 * 15 14 12 17 17 O 1.42900 * 113.61379 * 219.93733 * 15 14 12 18 18 C 1.53789 * 113.61547 * 274.13556 * 12 11 10 19 19 C 1.37696 * 109.87271 * 0.02562 * 6 5 4 20 20 C 1.39079 * 133.51119 * 180.02562 * 19 6 5 21 21 C 1.37795 * 119.77908 * 179.97438 * 20 19 6 22 22 C 1.38786 * 120.66208 * 359.97438 * 21 20 19 23 23 C 1.36656 * 120.53376 * 0.02562 * 22 21 20 24 24 C 1.39600 * 119.76026 * 359.67678 * 23 22 21 25 25 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 26 26 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 27 27 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 28 28 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 29 29 H 1.07994 * 125.02875 * 0.02562 * 5 4 2 30 30 H 1.09004 * 109.46873 * 24.97780 * 7 6 5 31 31 H 1.09006 * 109.46975 * 144.97583 * 7 6 5 32 32 H 0.96994 * 120.00652 * 359.97438 * 10 8 7 33 33 H 1.08991 * 109.47346 * 299.99863 * 11 10 8 34 34 H 1.09005 * 109.46962 * 60.00333 * 11 10 8 35 35 H 1.08998 * 113.61973 * 254.53375 * 14 12 11 36 36 H 1.09008 * 113.61447 * 25.43716 * 14 12 11 37 37 H 0.96701 * 113.99751 * 179.97438 * 17 15 14 38 38 H 1.08998 * 113.61359 * 334.57421 * 18 12 11 39 39 H 1.08997 * 113.60881 * 105.47254 * 18 12 11 40 40 H 1.08006 * 120.11001 * 359.93028 * 20 19 6 41 41 H 1.08004 * 119.66509 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.73055 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.11905 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4613 -0.1377 -2.3228 6 7 2.8037 -1.0991 -3.2342 7 6 3.4085 -0.8405 -4.5432 8 6 2.3290 -0.7851 -5.5933 9 8 1.1686 -0.9462 -5.2792 10 7 2.6531 -0.5575 -6.8815 11 6 1.6037 -0.5042 -7.9024 12 6 2.2354 -0.2340 -9.2695 13 1 3.1183 -0.8454 -9.4560 14 6 1.2241 -0.2426 -10.4279 15 6 1.9950 0.9560 -11.0059 16 1 2.8128 0.6711 -11.6678 17 8 1.1506 1.9622 -11.5685 18 6 2.4469 1.2602 -9.5659 19 6 2.4940 -2.3458 -2.7383 20 6 2.6295 -3.6362 -3.2390 21 6 2.2151 -4.7108 -2.4824 22 6 1.6635 -4.5193 -1.2234 23 6 1.5211 -3.2600 -0.7120 24 6 1.9399 -2.1574 -1.4588 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5879 2.4585 -1.2243 28 1 1.5615 2.4679 1.2085 29 1 2.5979 0.9246 -2.4612 30 1 3.9388 0.1115 -4.5167 31 1 4.1091 -1.6401 -4.7841 32 1 3.5811 -0.4290 -7.1328 33 1 1.0735 -1.4561 -7.9285 34 1 0.9031 0.2955 -7.6619 35 1 1.2785 -1.1371 -11.0484 36 1 0.2066 -0.0004 -10.1210 37 1 1.6297 2.7188 -11.9334 38 1 1.7644 1.9139 -9.0229 39 1 3.4871 1.5770 -9.4915 40 1 3.0573 -3.7955 -4.2178 41 1 2.3208 -5.7121 -2.8732 42 1 1.3442 -5.3724 -0.6431 43 1 1.0905 -3.1187 0.2683 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12309068_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:25:14 Heat of formation + Delta-G solvation = -23.203263 kcal Electronic energy + Delta-G solvation = -26019.531376 eV Core-core repulsion = 22225.772392 eV Total energy + Delta-G solvation = -3793.758984 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54399 -40.95694 -40.04655 -38.16687 -37.74070 -36.63055 -35.10829 -34.09243 -31.57601 -30.25729 -29.79357 -28.07830 -26.74250 -25.69967 -23.84639 -23.36685 -22.63260 -21.79216 -20.74009 -20.46610 -18.92950 -18.54630 -18.15184 -17.79579 -17.40109 -16.80722 -16.63312 -16.40543 -16.25189 -16.13133 -15.64338 -15.39253 -15.16294 -14.87923 -14.79127 -14.69657 -14.33112 -14.10670 -13.76372 -13.55529 -13.47628 -13.12968 -12.74760 -12.68058 -12.58781 -12.45954 -12.39350 -12.01569 -11.89722 -11.74923 -11.32843 -11.20720 -10.73984 -10.55758 -10.46559 -10.23139 -9.16860 -8.64294 -4.90414 0.13390 0.63207 1.33881 1.41055 1.43033 1.60883 1.69715 1.99096 2.18286 2.94068 3.27291 3.41880 3.49528 3.54814 3.64206 3.67625 3.74469 3.80827 3.84404 3.97534 4.03830 4.15015 4.18627 4.21438 4.29749 4.30973 4.48922 4.58341 4.60715 4.71176 4.74140 4.77934 4.78452 4.80585 4.89240 4.97914 5.11168 5.13202 5.26254 5.43358 5.50276 5.65852 5.73042 5.74518 6.17649 6.22467 6.45061 6.52778 6.87889 7.11038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.788 3.212 4 C -0.215 4.215 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.089 3.911 8 C 0.487 3.513 9 O -0.578 6.578 10 N -0.707 5.707 11 C 0.135 3.865 12 C -0.106 4.106 13 H 0.127 0.873 14 C -0.133 4.133 15 C 0.071 3.929 16 H 0.103 0.897 17 O -0.587 6.587 18 C -0.158 4.158 19 C 0.091 3.909 20 C -0.134 4.134 21 C -0.107 4.107 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.117 4.117 25 H 0.381 0.619 26 H 0.110 0.890 27 H -0.275 1.275 28 H -0.303 1.303 29 H 0.197 0.803 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.422 0.578 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.395 0.605 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 2.057 -5.949 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.165 4.165 3 Si 0.691 3.309 4 C -0.223 4.223 5 C -0.052 4.052 6 N -0.149 5.149 7 C -0.035 4.035 8 C 0.273 3.727 9 O -0.457 6.457 10 N -0.361 5.361 11 C 0.011 3.989 12 C -0.125 4.125 13 H 0.145 0.855 14 C -0.171 4.171 15 C 0.012 3.988 16 H 0.121 0.879 17 O -0.395 6.395 18 C -0.196 4.196 19 C -0.014 4.014 20 C -0.155 4.155 21 C -0.126 4.126 22 C -0.173 4.173 23 C -0.107 4.107 24 C -0.121 4.121 25 H 0.229 0.771 26 H 0.128 0.872 27 H -0.201 1.201 28 H -0.231 1.231 29 H 0.213 0.787 30 H 0.183 0.817 31 H 0.165 0.835 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.691 2.126 -5.314 11.254 hybrid contribution -1.004 0.079 -0.724 1.240 sum 8.687 2.205 -6.038 10.807 Atomic orbital electron populations 1.86551 1.19571 1.80582 1.49642 1.24733 0.82510 1.12117 0.97125 0.94191 0.89539 0.70415 0.76737 1.20711 1.10893 0.91873 0.98790 1.22018 0.99558 0.95084 0.88547 1.43439 1.53266 1.03819 1.14356 1.22006 0.93599 1.09385 0.78548 1.21582 0.90523 0.76055 0.84581 1.90808 1.22672 1.50374 1.81864 1.45776 1.12006 1.72322 1.06016 1.21220 0.90163 1.00894 0.86647 1.22515 1.00020 0.98017 0.91915 0.85549 1.23114 0.98904 0.98200 0.96910 1.23524 0.93332 0.88867 0.93062 0.87893 1.86504 1.38382 1.34379 1.80278 1.23738 1.02993 0.95754 0.97095 1.18408 1.01820 0.87021 0.94168 1.20256 1.05053 0.89104 1.01049 1.21140 0.98150 0.99052 0.94295 1.20922 1.02308 0.97040 0.97018 1.20459 0.98886 0.91714 0.99617 1.19353 1.03864 0.93828 0.95034 0.77062 0.87171 1.20109 1.23112 0.78659 0.81656 0.83489 0.73967 0.92737 0.93255 0.89692 0.90919 0.75512 0.90827 0.88832 0.84873 0.83649 0.84567 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.08 12.88 -148.98 -1.92 -7.00 16 2 C -0.06 -0.26 3.06 71.24 0.22 -0.04 16 3 Si 0.79 -0.60 30.82 68.60 2.11 1.52 16 4 C -0.22 -1.32 5.58 -18.62 -0.10 -1.43 16 5 C 0.07 0.13 9.89 83.00 0.82 0.95 16 6 N -0.47 -0.93 2.27 -519.99 -1.18 -2.11 16 7 C 0.09 -0.64 6.48 85.63 0.56 -0.09 16 8 C 0.49 -0.09 7.90 87.66 0.69 0.60 16 9 O -0.58 -7.32 16.42 -3.04 -0.05 -7.37 16 10 N -0.71 4.62 5.56 -463.05 -2.57 2.05 16 11 C 0.13 -0.32 5.50 86.38 0.48 0.15 16 12 C -0.11 0.80 3.75 -10.26 -0.04 0.76 16 13 H 0.13 -1.53 8.14 -2.39 -0.02 -1.55 16 14 C -0.13 0.41 7.47 31.12 0.23 0.65 16 15 C 0.07 -0.32 5.21 31.18 0.16 -0.16 16 16 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 17 O -0.59 -0.01 13.68 -148.98 -2.04 -2.05 16 18 C -0.16 1.10 7.48 31.18 0.23 1.34 16 19 C 0.09 0.69 6.80 39.03 0.27 0.95 16 20 C -0.13 -0.73 10.00 22.37 0.22 -0.51 16 21 C -0.11 -0.55 10.01 22.30 0.22 -0.33 16 22 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 23 C -0.09 -0.87 10.05 22.23 0.22 -0.65 16 24 C -0.12 -1.20 6.35 -20.20 -0.13 -1.33 16 25 H 0.38 1.65 8.70 -74.06 -0.64 1.01 16 26 H 0.11 0.45 7.96 -2.38 -0.02 0.43 16 27 H -0.27 -0.40 7.00 99.48 0.70 0.30 16 28 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 29 H 0.20 -0.98 6.27 -2.91 -0.02 -1.00 16 30 H 0.17 -2.61 8.12 -2.38 -0.02 -2.63 16 31 H 0.15 -1.88 8.14 -2.38 -0.02 -1.90 16 32 H 0.42 -6.21 8.47 -92.71 -0.79 -6.99 16 33 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.05 0.12 7.87 -2.38 -0.02 0.10 16 35 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.07 0.10 8.10 -2.38 -0.02 0.08 16 37 H 0.39 -3.29 9.12 -74.06 -0.68 -3.96 16 38 H 0.07 -0.20 7.92 -2.39 -0.02 -0.22 16 39 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.13 0.06 8.06 -2.91 -0.02 0.04 16 41 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 42 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 43 H 0.12 1.06 8.06 -2.91 -0.02 1.03 16 Total: 0.00 -31.19 364.84 -2.40 -33.59 By element: Atomic # 1 Polarization: -17.62 SS G_CDS: -1.03 Total: -18.64 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.27 Total: 0.02 kcal Atomic # 7 Polarization: 3.69 SS G_CDS: -3.75 Total: -0.06 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -4.01 Total: -16.42 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.11 Total: 1.52 kcal Total: -31.19 -2.40 -33.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12309068_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.385 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds