Wall clock time and date at job start Tue Mar 9 2021 12:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36548 * 126.64435 * 2 1 4 4 C 1.46651 * 125.98926 * 359.97438 * 3 2 1 5 5 O 1.21703 * 119.99738 * 353.49167 * 4 3 2 6 6 N 1.34776 * 120.00138 * 173.49671 * 4 3 2 7 7 C 1.46496 * 120.00064 * 4.07746 * 6 4 3 8 8 C 1.46507 * 119.99943 * 184.07213 * 6 4 3 9 9 H 1.09000 * 112.84536 * 5.65665 * 8 6 4 10 10 C 1.53776 * 113.61211 * 136.95735 * 8 6 4 11 11 C 1.53782 * 87.08020 * 139.98396 * 10 8 6 12 12 H 1.08999 * 113.69071 * 89.12586 * 11 10 8 13 13 C 1.50703 * 113.61354 * 220.01815 * 11 10 8 14 14 N 1.34770 * 120.00443 * 277.49845 * 13 11 10 15 15 O 1.21290 * 119.99523 * 97.50040 * 13 11 10 16 16 C 1.53776 * 113.61504 * 234.45857 * 8 6 4 17 17 O 1.34915 * 108.02448 * 179.97438 * 3 2 1 18 18 C 1.33930 * 109.38633 * 0.02562 * 17 3 2 19 19 C 1.50698 * 125.62071 * 179.97438 * 18 17 3 20 20 O 1.42898 * 109.47215 * 270.02907 * 19 18 17 21 21 C 1.35898 * 116.99961 * 179.97438 * 20 19 18 22 22 C 1.38739 * 120.05682 * 179.97438 * 21 20 19 23 23 C 1.38137 * 119.94578 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.05955 * 0.02562 * 23 22 21 25 25 C 1.50697 * 119.94958 * 179.97438 * 24 23 22 26 26 O 1.42893 * 109.47161 * 300.00004 * 25 24 23 27 27 Si 1.86303 * 109.47185 * 179.97438 * 25 24 23 28 28 C 1.38269 * 120.10755 * 0.24909 * 24 23 22 29 29 C 1.38150 * 120.05496 * 359.45476 * 28 24 23 30 30 C 1.35130 * 108.76873 * 0.22477 * 18 17 3 31 31 H 1.08998 * 109.47084 * 90.00151 * 1 2 3 32 32 H 1.09000 * 109.46740 * 209.99786 * 1 2 3 33 33 H 1.08992 * 109.47170 * 329.99764 * 1 2 3 34 34 H 1.08996 * 109.47549 * 84.22559 * 7 6 4 35 35 H 1.09005 * 109.47164 * 204.22960 * 7 6 4 36 36 H 1.09000 * 109.47061 * 324.22677 * 7 6 4 37 37 H 1.09005 * 113.62016 * 254.53067 * 10 8 6 38 38 H 1.09006 * 113.61574 * 25.43937 * 10 8 6 39 39 H 0.96998 * 119.99746 * 359.97438 * 14 13 11 40 40 H 0.96998 * 120.00296 * 180.02562 * 14 13 11 41 41 H 1.08996 * 113.61582 * 334.56623 * 16 8 6 42 42 H 1.08999 * 113.61758 * 105.47534 * 16 8 6 43 43 H 1.08997 * 109.47577 * 150.02025 * 19 18 17 44 44 H 1.09008 * 109.46661 * 30.02242 * 19 18 17 45 45 H 1.08000 * 120.02174 * 359.97438 * 22 21 20 46 46 H 1.07996 * 119.97227 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.46741 * 60.00166 * 25 24 23 48 48 H 0.96696 * 114.00087 * 179.97438 * 26 25 24 49 49 H 1.48492 * 110.00054 * 298.68107 * 27 25 24 50 50 H 1.48496 * 109.99741 * 60.00531 * 27 25 24 51 51 H 1.08004 * 119.97477 * 179.70485 * 28 24 23 52 52 H 1.08000 * 120.02980 * 180.24566 * 29 28 24 53 53 H 1.07998 * 126.45099 * 179.73544 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8843 2.4953 -0.0005 5 8 0.7032 2.7634 -0.1205 6 7 2.7899 3.4846 0.1317 7 6 4.2190 3.1671 0.1862 8 6 2.3451 4.8777 0.2209 9 1 1.2603 4.9735 0.2670 10 6 3.0836 5.6924 1.2959 11 6 3.0910 6.8594 0.2943 12 1 2.2108 7.4989 0.3605 13 6 4.3810 7.6383 0.2845 14 7 4.5952 8.5990 1.2051 15 8 5.2265 7.4006 -0.5520 16 6 3.0015 5.8016 -0.8184 17 8 3.6005 0.6648 0.0006 18 6 3.6184 -0.6743 0.0004 19 6 4.8551 -1.5356 0.0003 20 8 5.2464 -1.8070 -1.3470 21 6 6.3524 -2.5764 -1.5250 22 6 6.7887 -2.8799 -2.8066 23 6 7.9129 -3.6626 -2.9849 24 6 8.6028 -4.1440 -1.8877 25 6 9.8286 -4.9982 -2.0851 26 8 9.4767 -6.1747 -2.8158 27 14 10.5225 -5.4817 -0.4252 28 6 8.1667 -3.8477 -0.6095 29 6 7.0466 -3.0603 -0.4257 30 6 2.3449 -1.1262 -0.0054 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 4.6088 3.0712 -0.8271 35 1 4.7491 3.9655 0.7055 36 1 4.3624 2.2281 0.7209 37 1 2.4847 5.8849 2.1861 38 1 4.0776 5.3098 1.5277 39 1 3.9189 8.7893 1.8738 40 1 5.4254 9.1006 1.1986 41 1 3.9729 5.4488 -1.1646 42 1 2.3364 6.0823 -1.6351 43 1 4.6446 -2.4738 0.5136 44 1 5.6617 -1.0130 0.5147 45 1 6.2494 -2.5052 -3.6640 46 1 8.2532 -3.8988 -3.9823 47 1 10.5778 -4.4353 -2.6417 48 1 10.2189 -6.7722 -2.9803 49 1 10.9221 -4.2680 0.3314 50 1 9.5108 -6.2497 0.3440 51 1 8.7046 -4.2289 0.2461 52 1 6.7086 -2.8258 0.5729 53 1 2.0307 -2.1594 -0.0110 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12311536_4549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:55 Heat of formation + Delta-G solvation = -55.986335 kcal Electronic energy + Delta-G solvation = -37026.107694 eV Core-core repulsion = 32026.035226 eV Total energy + Delta-G solvation = -5000.072467 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.176 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -44.04736 -41.81208 -41.39827 -40.47321 -39.22958 -38.69815 -37.25367 -36.01837 -35.07321 -34.60557 -33.28939 -32.20598 -31.70361 -29.06054 -28.81618 -28.37028 -26.88579 -26.73875 -26.16557 -24.31192 -23.31202 -22.74383 -22.21194 -21.44004 -20.58950 -20.27221 -19.60948 -18.97921 -18.50275 -18.37174 -17.95146 -17.89031 -17.56181 -17.15333 -17.01559 -16.79047 -16.62962 -16.33124 -16.12636 -15.78507 -15.60788 -15.38950 -15.28242 -14.89460 -14.62408 -14.53853 -14.48842 -14.29726 -14.12358 -14.07252 -13.98729 -13.87086 -13.63784 -13.57468 -13.44285 -13.18277 -12.96812 -12.86621 -12.52776 -12.42475 -12.22521 -12.16107 -12.07002 -11.87247 -11.73215 -11.35542 -10.94902 -10.86275 -10.69164 -10.30095 -10.18606 -10.05914 -9.66812 -9.33717 -4.93256 -0.32917 0.11347 0.16806 0.88385 1.25877 1.31942 1.53472 1.64492 1.76591 1.85313 1.96556 2.25938 2.50222 2.61285 3.11882 3.26559 3.37485 3.41501 3.48270 3.56170 3.59102 3.64264 3.72962 3.79220 3.86601 3.93320 3.98474 3.99460 4.14217 4.23023 4.23909 4.28524 4.33425 4.41609 4.43184 4.46828 4.50668 4.59099 4.59314 4.60747 4.68911 4.75125 4.80652 4.86894 4.89482 4.93546 5.01939 5.03193 5.08637 5.09699 5.26455 5.36517 5.36634 5.55587 5.65871 5.85447 6.04633 6.15237 6.43922 6.74121 6.92400 7.31073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.094 4.094 3 C -0.092 4.092 4 C 0.599 3.401 5 O -0.542 6.542 6 N -0.592 5.592 7 C 0.070 3.930 8 C 0.116 3.884 9 H 0.126 0.874 10 C -0.121 4.121 11 C -0.125 4.125 12 H 0.149 0.851 13 C 0.524 3.476 14 N -0.836 5.836 15 O -0.594 6.594 16 C -0.134 4.134 17 O -0.153 6.153 18 C 0.003 3.997 19 C 0.135 3.865 20 O -0.322 6.322 21 C 0.126 3.874 22 C -0.157 4.157 23 C -0.056 4.056 24 C -0.129 4.129 25 C -0.076 4.076 26 O -0.565 6.565 27 Si 0.771 3.229 28 C -0.100 4.100 29 C -0.202 4.202 30 C -0.184 4.184 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.419 0.581 40 H 0.405 0.595 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.093 0.907 48 H 0.403 0.597 49 H -0.287 1.287 50 H -0.296 1.296 51 H 0.123 0.877 52 H 0.156 0.844 53 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.875 -0.741 5.598 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.388 3.612 5 O -0.423 6.423 6 N -0.322 5.322 7 C -0.072 4.072 8 C 0.013 3.987 9 H 0.144 0.856 10 C -0.159 4.159 11 C -0.147 4.147 12 H 0.167 0.833 13 C 0.309 3.691 14 N -0.399 5.399 15 O -0.475 6.475 16 C -0.173 4.173 17 O -0.050 6.050 18 C -0.049 4.049 19 C 0.061 3.939 20 O -0.237 6.237 21 C 0.081 3.919 22 C -0.175 4.175 23 C -0.074 4.074 24 C -0.129 4.129 25 C -0.185 4.185 26 O -0.375 6.375 27 Si 0.677 3.323 28 C -0.117 4.117 29 C -0.221 4.221 30 C -0.203 4.203 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.251 0.749 40 H 0.236 0.764 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.111 0.889 48 H 0.254 0.746 49 H -0.214 1.214 50 H -0.224 1.224 51 H 0.140 0.860 52 H 0.174 0.826 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.154 -0.219 5.700 6.518 hybrid contribution -0.278 0.681 -0.040 0.737 sum 2.876 0.462 5.660 6.365 Atomic orbital electron populations 1.20428 0.87237 1.03932 1.03248 1.20967 0.98492 0.91115 0.99072 1.21853 0.81757 0.94816 1.15959 1.16789 0.85332 0.82373 0.76718 1.90837 1.16951 1.82574 1.51899 1.47748 1.07408 1.06391 1.70669 1.22120 0.79232 1.02983 1.02849 1.22820 1.00871 0.77618 0.97367 0.85619 1.23360 1.02202 0.92744 0.97625 1.22575 0.96940 0.96001 0.99158 0.83294 1.20720 0.88500 0.79827 0.80027 1.43787 1.24190 1.38232 1.33688 1.90755 1.48153 1.68621 1.39947 1.23325 1.01867 0.94816 0.97317 1.84226 1.27886 1.21832 1.71007 1.22413 0.96744 0.81025 1.04715 1.21223 0.91881 0.98117 0.82669 1.86117 1.42013 1.66304 1.29257 1.19037 0.86537 0.91803 0.94531 1.20739 0.98933 1.02427 0.95437 1.21008 0.92986 0.93762 0.99634 1.19677 0.98864 1.01006 0.93342 1.24769 0.96680 0.88524 1.08571 1.86437 1.40713 1.33081 1.77269 0.94349 0.83830 0.80881 0.73215 1.20851 0.96447 0.98139 0.96279 1.21374 0.98229 1.03246 0.99222 1.21870 0.90872 1.01192 1.06391 0.90530 0.89180 0.90989 0.92493 0.88756 0.89520 0.87179 0.88998 0.74933 0.76372 0.89963 0.90195 0.85678 0.88062 0.84124 0.83597 0.88939 0.74603 1.21444 1.22425 0.85962 0.82640 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 9.75 71.24 0.69 0.31 16 2 C -0.09 -0.59 6.20 -19.74 -0.12 -0.71 16 3 C -0.09 -0.73 6.78 24.07 0.16 -0.57 16 4 C 0.60 5.46 7.64 86.44 0.66 6.12 16 5 O -0.54 -7.30 14.30 -4.36 -0.06 -7.36 16 6 N -0.59 -2.49 3.09 -824.39 -2.55 -5.04 16 7 C 0.07 0.09 8.69 127.77 1.11 1.20 16 8 C 0.12 0.07 4.23 45.51 0.19 0.26 16 9 H 0.13 0.20 7.19 -2.39 -0.02 0.18 16 10 C -0.12 0.59 7.12 31.12 0.22 0.82 16 11 C -0.13 0.48 4.15 -11.01 -0.05 0.43 16 12 H 0.15 -1.40 8.14 -2.39 -0.02 -1.42 16 13 C 0.52 0.58 7.63 87.66 0.67 1.25 16 14 N -0.84 5.35 8.87 -173.53 -1.54 3.81 16 15 O -0.59 -7.03 16.74 -3.06 -0.05 -7.08 16 16 C -0.13 -0.20 7.00 31.12 0.22 0.02 16 17 O -0.15 -0.83 7.26 -5.04 -0.04 -0.87 16 18 C 0.00 0.01 6.94 24.97 0.17 0.18 16 19 C 0.14 -0.21 5.27 71.24 0.38 0.17 16 20 O -0.32 -1.43 10.12 -92.40 -0.94 -2.37 16 21 C 0.13 0.58 6.69 22.51 0.15 0.73 16 22 C -0.16 -0.78 9.99 22.37 0.22 -0.55 16 23 C -0.06 -0.24 9.60 22.25 0.21 -0.03 16 24 C -0.13 -0.58 5.42 -19.85 -0.11 -0.69 16 25 C -0.08 0.06 2.81 71.24 0.20 0.26 16 26 O -0.57 0.26 12.74 -148.98 -1.90 -1.64 16 27 Si 0.77 -1.93 29.79 68.60 2.04 0.12 16 28 C -0.10 -0.44 8.66 22.26 0.19 -0.25 16 29 C -0.20 -0.49 9.04 22.37 0.20 -0.29 16 30 C -0.18 -0.48 10.73 22.07 0.24 -0.24 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.07 0.52 6.60 -2.39 -0.02 0.50 16 34 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.09 -0.16 5.76 -2.38 -0.01 -0.17 16 36 H 0.09 0.09 5.33 -2.39 -0.01 0.08 16 37 H 0.11 -0.98 8.14 -2.38 -0.02 -1.00 16 38 H 0.09 -0.37 5.92 -2.38 -0.01 -0.38 16 39 H 0.42 -5.47 8.83 -92.71 -0.82 -6.29 16 40 H 0.41 -2.66 8.93 -92.71 -0.83 -3.49 16 41 H 0.08 0.48 6.77 -2.39 -0.02 0.47 16 42 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.13 -0.83 7.66 -2.39 -0.02 -0.85 16 44 H 0.10 -0.49 7.66 -2.38 -0.02 -0.51 16 45 H 0.14 0.43 8.06 -2.91 -0.02 0.41 16 46 H 0.15 0.19 8.06 -2.91 -0.02 0.17 16 47 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 48 H 0.40 -4.41 8.74 -74.06 -0.65 -5.06 16 49 H -0.29 -0.73 7.11 99.48 0.71 -0.03 16 50 H -0.30 -1.45 7.11 99.48 0.71 -0.74 16 51 H 0.12 0.38 4.87 -2.91 -0.01 0.37 16 52 H 0.16 -0.55 6.30 -2.91 -0.02 -0.56 16 53 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 Total: 0.00 -30.07 432.99 -0.65 -30.72 By element: Atomic # 1 Polarization: -17.47 SS G_CDS: -1.24 Total: -18.71 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.62 Total: 8.43 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -4.09 Total: -1.22 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -2.98 Total: -19.32 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.04 Total: 0.12 kcal Total: -30.07 -0.65 -30.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12311536_4549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.266 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds