Wall clock time and date at job start Tue Mar 9 2021 12:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 116.99904 * 2 1 4 4 C 1.39150 * 120.07400 * 180.02562 * 3 2 1 5 5 O 1.36000 * 120.07464 * 0.02562 * 4 3 2 6 6 C 1.42894 * 117.00215 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47001 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00156 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00121 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99736 * 359.97438 * 9 7 6 11 11 C 1.46504 * 120.00202 * 180.02562 * 9 7 6 12 12 H 1.09001 * 112.84781 * 5.05766 * 11 9 7 13 13 C 1.53778 * 113.61551 * 136.25912 * 11 9 7 14 14 C 1.53952 * 87.02005 * 139.95080 * 13 11 9 15 15 H 1.09002 * 113.53546 * 89.18359 * 14 13 11 16 16 C 1.50700 * 113.66533 * 220.06571 * 14 13 11 17 17 N 1.34779 * 120.00064 * 277.56013 * 16 14 13 18 18 O 1.21280 * 120.00162 * 97.55717 * 16 14 13 19 19 C 1.53780 * 87.11208 * 334.63661 * 14 13 11 20 20 C 1.38570 * 119.85607 * 180.02562 * 4 3 2 21 21 C 1.38241 * 119.99827 * 359.97438 * 20 4 3 22 22 C 1.38250 * 120.14596 * 359.97438 * 21 20 4 23 23 C 1.50704 * 119.92738 * 179.97438 * 22 21 20 24 24 O 1.42900 * 109.46936 * 119.99826 * 23 22 21 25 25 Si 1.86298 * 109.46698 * 0.02562 * 23 22 21 26 26 C 1.38244 * 120.14969 * 0.27359 * 22 21 20 27 27 H 1.09004 * 109.46664 * 299.99845 * 1 2 3 28 28 H 1.08999 * 109.47345 * 59.99358 * 1 2 3 29 29 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47752 * 300.00164 * 6 5 4 31 31 H 1.09006 * 109.46991 * 60.00733 * 6 5 4 32 32 H 1.09000 * 109.47405 * 85.70156 * 10 9 7 33 33 H 1.09006 * 109.46880 * 205.69483 * 10 9 7 34 34 H 1.08996 * 109.47470 * 325.69101 * 10 9 7 35 35 H 1.09006 * 113.60722 * 254.52890 * 13 11 9 36 36 H 1.08997 * 113.61768 * 25.42831 * 13 11 9 37 37 H 0.97004 * 119.99787 * 359.97438 * 17 16 14 38 38 H 0.96995 * 120.00463 * 179.97438 * 17 16 14 39 39 H 1.09004 * 113.60982 * 270.81159 * 19 14 13 40 40 H 1.08995 * 113.68948 * 139.92284 * 19 14 13 41 41 H 1.08001 * 119.99934 * 179.97438 * 20 4 3 42 42 H 1.07996 * 119.92172 * 180.02562 * 21 20 4 43 43 H 1.08995 * 109.47253 * 240.00325 * 23 22 21 44 44 H 0.96707 * 114.00042 * 300.00438 * 24 23 22 45 45 H 1.48502 * 109.99725 * 179.97438 * 25 23 22 46 46 H 1.48500 * 110.00104 * 301.31672 * 25 23 22 47 47 H 1.07997 * 120.00370 * 179.74753 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1796 0.1477 -0.0016 6 6 5.6003 0.3008 -0.0027 7 6 6.2519 -1.0581 -0.0044 8 8 5.5670 -2.0591 -0.0051 9 7 7.5957 -1.1611 -0.0051 10 6 8.4230 0.0479 -0.0047 11 6 8.2291 -2.4821 -0.0073 12 1 7.5099 -3.2963 -0.0968 13 6 9.4130 -2.5960 -0.9821 14 6 10.1276 -3.4155 0.1077 15 1 9.9283 -4.4855 0.0488 16 6 11.5951 -3.0985 0.2384 17 7 12.4855 -3.6733 -0.5943 18 8 11.9749 -2.3260 1.0927 19 6 9.2451 -2.6800 1.1300 20 6 4.0603 2.5234 0.0000 21 6 3.3029 3.6799 0.0005 22 6 1.9224 3.6058 0.0000 23 6 1.1016 4.8697 0.0012 24 8 0.2776 4.9035 -1.1659 25 14 2.2365 6.3470 0.0024 26 6 1.2932 2.3748 0.0046 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 5.9059 0.8509 -0.8925 31 1 5.9072 0.8501 0.8874 32 1 8.5651 0.3907 1.0201 33 1 9.3922 -0.1749 -0.4509 34 1 7.9274 0.8275 -0.5833 35 1 9.1847 -3.1687 -1.8811 36 1 9.8946 -1.6422 -1.1975 37 1 12.1817 -4.2915 -1.2774 38 1 13.4299 -3.4690 -0.5105 39 1 9.6809 -1.7492 1.4932 40 1 8.8812 -3.3191 1.9344 41 1 5.1386 2.5841 0.0000 42 1 3.7908 4.6434 0.0005 43 1 0.4725 4.8935 0.8910 44 1 0.7717 4.8849 -1.9969 45 1 1.4392 7.5999 0.0030 46 1 3.1211 6.3069 1.1945 47 1 0.2146 2.3197 0.0083 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12311536_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:30 Heat of formation + Delta-G solvation = -111.670309 kcal Electronic energy + Delta-G solvation = -30840.437435 eV Core-core repulsion = 26378.166369 eV Total energy + Delta-G solvation = -4462.271065 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98419 -41.61640 -40.61963 -39.44267 -38.91260 -38.43157 -36.91433 -35.64811 -34.57090 -32.04514 -31.46676 -29.87966 -28.49128 -28.24608 -26.88558 -26.72628 -26.11207 -23.69038 -22.71632 -22.18895 -20.62502 -20.11612 -19.86084 -18.72441 -18.41336 -18.21169 -17.85258 -17.77236 -17.62385 -17.20891 -16.77139 -16.72006 -16.40158 -16.08598 -15.88468 -15.77381 -15.66837 -15.39225 -15.22071 -14.78660 -14.39715 -14.29179 -14.22917 -13.80921 -13.65122 -13.54300 -13.47574 -13.22411 -12.98021 -12.65147 -12.53801 -12.36399 -12.18575 -12.11718 -12.06426 -12.01235 -11.73391 -11.67698 -11.03073 -10.83746 -10.65334 -10.43473 -9.79310 -9.75457 -8.91735 -4.96383 0.16304 0.27492 1.34248 1.36932 1.39283 1.59615 1.67569 2.00393 2.30551 2.38454 2.56104 2.67600 3.25514 3.37806 3.45898 3.49453 3.68590 3.70739 3.82671 3.84113 3.87264 4.00319 4.04076 4.13315 4.17101 4.27515 4.28394 4.30307 4.36275 4.50053 4.52680 4.57178 4.62917 4.64671 4.65864 4.68079 4.84221 4.92521 4.96896 5.00060 5.12075 5.17077 5.36719 5.45653 5.59613 5.88957 5.95705 6.21157 6.46958 6.51062 6.78292 6.98554 7.34209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.077 3.923 4 C 0.084 3.916 5 O -0.314 6.314 6 C 0.037 3.963 7 C 0.512 3.488 8 O -0.571 6.571 9 N -0.596 5.596 10 C 0.057 3.943 11 C 0.115 3.885 12 H 0.110 0.890 13 C -0.119 4.119 14 C -0.129 4.129 15 H 0.141 0.859 16 C 0.526 3.474 17 N -0.837 5.837 18 O -0.592 6.592 19 C -0.131 4.131 20 C -0.159 4.159 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.076 4.076 24 O -0.557 6.557 25 Si 0.787 3.213 26 C -0.152 4.152 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.418 0.582 38 H 0.405 0.595 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.104 0.896 44 H 0.396 0.604 45 H -0.303 1.303 46 H -0.279 1.279 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 2.431 -6.078 8.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.032 3.968 4 C 0.039 3.961 5 O -0.228 6.228 6 C -0.040 4.040 7 C 0.300 3.700 8 O -0.449 6.449 9 N -0.329 5.329 10 C -0.084 4.084 11 C 0.012 3.988 12 H 0.128 0.872 13 C -0.157 4.157 14 C -0.151 4.151 15 H 0.159 0.841 16 C 0.311 3.689 17 N -0.400 5.400 18 O -0.472 6.472 19 C -0.170 4.170 20 C -0.178 4.178 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.185 4.185 24 O -0.365 6.365 25 Si 0.693 3.307 26 C -0.171 4.171 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.250 0.750 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.192 0.808 42 H 0.176 0.824 43 H 0.121 0.879 44 H 0.246 0.754 45 H -0.232 1.232 46 H -0.206 1.206 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.313 2.730 -4.645 7.567 hybrid contribution -0.433 -0.808 0.399 1.000 sum 4.880 1.922 -4.246 6.748 Atomic orbital electron populations 1.23281 0.76820 1.05202 1.02074 1.86191 1.22982 1.26613 1.89083 1.18663 0.89866 0.85630 1.02657 1.18598 0.88212 0.86523 1.02816 1.86220 1.18129 1.29134 1.89294 1.22810 0.79324 0.95275 1.06610 1.20591 0.82652 0.90925 0.75850 1.90748 1.63648 1.40092 1.50452 1.47764 1.04458 1.08322 1.72347 1.22240 0.96753 0.85630 1.03779 1.22633 0.93386 0.85586 0.97226 0.87247 1.23375 0.93995 1.01132 0.97208 1.22596 0.89656 1.03239 0.99616 0.84122 1.20665 0.89219 0.79021 0.79949 1.43807 1.10864 1.48628 1.36726 1.90744 1.81501 1.37958 1.37036 1.23311 0.95083 1.01613 0.97019 1.21371 1.02214 0.89368 1.04821 1.21005 0.92310 0.98962 1.00459 1.20204 0.94458 0.94841 1.02398 1.25263 0.99793 1.02446 0.91031 1.86462 1.36761 1.96934 1.16368 0.93624 0.78237 0.72411 0.86423 1.21003 1.00499 0.90539 1.05013 0.91984 0.91600 0.87068 0.85302 0.86134 0.91082 0.89366 0.88004 0.87933 0.88186 0.75036 0.76353 0.89073 0.90851 0.80821 0.82387 0.87861 0.75443 1.23162 1.20585 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -3.84 10.28 -79.64 -0.82 -4.66 16 3 C 0.08 0.65 6.70 22.57 0.15 0.80 16 4 C 0.08 0.51 6.70 22.57 0.15 0.66 16 5 O -0.31 -2.96 9.45 -67.13 -0.63 -3.60 16 6 C 0.04 -0.03 3.83 71.24 0.27 0.25 16 7 C 0.51 2.79 7.75 87.66 0.68 3.47 16 8 O -0.57 -9.54 15.95 15.99 0.26 -9.28 16 9 N -0.60 0.61 3.09 -819.64 -2.53 -1.92 16 10 C 0.06 -0.49 9.17 127.77 1.17 0.68 16 11 C 0.12 -0.10 4.23 45.52 0.19 0.09 16 12 H 0.11 0.34 7.17 -2.39 -0.02 0.32 16 13 C -0.12 0.77 7.14 31.18 0.22 1.00 16 14 C -0.13 0.62 4.15 -10.96 -0.05 0.57 16 15 H 0.14 -1.26 8.14 -2.39 -0.02 -1.28 16 16 C 0.53 -0.21 7.63 87.66 0.67 0.46 16 17 N -0.84 6.22 8.87 -173.53 -1.54 4.68 16 18 O -0.59 -5.70 16.74 -3.03 -0.05 -5.75 16 19 C -0.13 0.06 7.00 31.12 0.22 0.28 16 20 C -0.16 0.34 9.04 22.35 0.20 0.54 16 21 C -0.11 0.33 8.66 22.27 0.19 0.53 16 22 C -0.12 -0.04 5.39 -19.86 -0.11 -0.15 16 23 C -0.08 0.08 2.82 71.24 0.20 0.28 16 24 O -0.56 0.11 12.77 -148.98 -1.90 -1.80 16 25 Si 0.79 -3.17 29.78 68.60 2.04 -1.13 16 26 C -0.15 -0.63 8.60 22.35 0.19 -0.44 16 27 H 0.06 0.05 7.65 -2.38 -0.02 0.03 16 28 H 0.07 0.02 7.67 -2.39 -0.02 0.01 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.13 -1.09 6.93 -2.39 -0.02 -1.11 16 31 H 0.12 -0.81 7.63 -2.38 -0.02 -0.82 16 32 H 0.07 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.09 -0.82 5.79 -2.38 -0.01 -0.83 16 34 H 0.10 -1.44 6.62 -2.39 -0.02 -1.46 16 35 H 0.10 -0.94 8.14 -2.38 -0.02 -0.96 16 36 H 0.10 -0.73 5.94 -2.39 -0.01 -0.74 16 37 H 0.42 -5.70 8.83 -92.71 -0.82 -6.52 16 38 H 0.41 -3.12 8.93 -92.71 -0.83 -3.95 16 39 H 0.09 0.18 6.75 -2.38 -0.02 0.17 16 40 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.17 -1.77 6.30 -2.91 -0.02 -1.79 16 42 H 0.16 -1.39 4.87 -2.91 -0.01 -1.40 16 43 H 0.10 0.06 7.96 -2.39 -0.02 0.04 16 44 H 0.40 -3.28 8.70 -74.05 -0.64 -3.92 16 45 H -0.30 -1.24 7.11 99.48 0.71 -0.54 16 46 H -0.28 0.07 7.11 99.48 0.71 0.78 16 47 H 0.14 0.40 6.30 -2.91 -0.02 0.38 16 Total: 0.00 -36.60 384.52 -0.89 -37.50 By element: Atomic # 1 Polarization: -23.05 SS G_CDS: -1.19 Total: -24.24 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.48 Total: 10.19 kcal Atomic # 7 Polarization: 6.83 SS G_CDS: -4.07 Total: 2.76 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -3.15 Total: -25.08 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.04 Total: -1.13 kcal Total: -36.60 -0.89 -37.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12311536_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.173 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds