Wall clock time and date at job start Tue Mar 9 2021 12:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37875 * 126.45616 * 2 1 4 4 C 1.46680 * 126.23143 * 0.04189 * 3 2 1 5 5 O 1.21695 * 119.99699 * 103.74730 * 4 3 2 6 6 N 1.34771 * 120.00038 * 283.74435 * 4 3 2 7 7 C 1.46501 * 119.99951 * 5.41030 * 6 4 3 8 8 C 1.46493 * 119.99934 * 185.41350 * 6 4 3 9 9 C 1.53002 * 109.47211 * 89.99869 * 8 6 4 10 10 H 1.09001 * 112.84825 * 43.80873 * 9 8 6 11 11 C 1.53787 * 113.61505 * 174.99912 * 9 8 6 12 12 C 1.53774 * 87.08077 * 139.98220 * 11 9 8 13 13 H 1.08997 * 113.61777 * 89.11752 * 12 11 9 14 14 O 1.42906 * 113.61551 * 219.93779 * 12 11 9 15 15 C 1.53779 * 113.61638 * 272.49508 * 9 8 6 16 16 N 1.37651 * 107.53125 * 180.02562 * 3 2 1 17 17 C 1.35530 * 108.64344 * 0.02562 * 16 3 2 18 18 C 1.50702 * 125.56055 * 179.97438 * 17 16 3 19 19 O 1.42898 * 109.47262 * 299.99932 * 18 17 16 20 20 Si 1.86305 * 109.47113 * 180.02562 * 18 17 16 21 21 C 1.35453 * 108.87766 * 0.22846 * 17 16 3 22 22 H 1.08994 * 109.47407 * 89.99721 * 1 2 3 23 23 H 1.09008 * 109.46571 * 209.99837 * 1 2 3 24 24 H 1.09001 * 109.46783 * 329.99305 * 1 2 3 25 25 H 1.09004 * 109.47014 * 91.12372 * 7 6 4 26 26 H 1.09001 * 109.47084 * 211.11698 * 7 6 4 27 27 H 1.08996 * 109.47482 * 331.11857 * 7 6 4 28 28 H 1.09007 * 109.47310 * 209.99615 * 8 6 4 29 29 H 1.09001 * 109.47573 * 329.99972 * 8 6 4 30 30 H 1.08997 * 113.61274 * 254.53168 * 11 9 8 31 31 H 1.09003 * 113.61382 * 25.34728 * 11 9 8 32 32 H 0.96702 * 113.99839 * 180.02562 * 14 12 11 33 33 H 1.08998 * 113.61434 * 334.57260 * 15 9 8 34 34 H 1.09004 * 113.61102 * 105.46926 * 15 9 8 35 35 H 0.96995 * 125.67510 * 180.02562 * 16 3 2 36 36 H 1.08996 * 109.47500 * 60.00093 * 18 17 16 37 37 H 0.96702 * 114.00157 * 300.00089 * 19 18 17 38 38 H 1.48499 * 109.99985 * 58.68128 * 20 18 17 39 39 H 1.48498 * 109.99982 * 179.97438 * 20 18 17 40 40 H 1.07993 * 126.06932 * 179.76993 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5093 0.0009 5 8 1.9485 3.1642 1.0249 6 7 1.4239 3.0706 -1.1323 7 6 1.2416 2.2524 -2.3338 8 6 1.0997 4.4989 -1.1627 9 6 2.3380 5.2941 -1.5812 10 1 2.8694 4.8407 -2.4179 11 6 2.0722 6.7980 -1.7626 12 6 3.4357 7.0396 -1.0940 13 1 4.2685 7.0636 -1.7967 14 8 3.4415 8.1453 -0.1887 15 6 3.2507 5.6776 -0.4044 16 7 3.6284 0.6625 -0.0006 17 6 3.6217 -0.6928 -0.0015 18 6 4.8434 -1.5752 -0.0029 19 8 5.6232 -1.3073 -1.1700 20 14 4.3183 -3.3627 -0.0046 21 6 2.3379 -1.1247 -0.0067 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5140 25 1 0.2274 1.8534 -2.3513 26 1 1.4058 2.8660 -3.2196 27 1 1.9559 1.4291 -2.3246 28 1 0.2964 4.6741 -1.8784 29 1 0.7796 4.8201 -0.1715 30 1 2.0355 7.1121 -2.8056 31 1 1.2274 7.1654 -1.1799 32 1 4.2966 8.3025 0.2347 33 1 2.7291 5.7390 0.5507 34 1 4.1655 5.0873 -0.3510 35 1 4.4190 1.2244 -0.0004 36 1 5.4394 -1.3721 0.8867 37 1 5.1551 -1.4667 -2.0010 38 1 3.4787 -3.6443 -1.1967 39 1 5.5140 -4.2433 -0.0066 40 1 2.0137 -2.1548 -0.0121 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12312124_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:09 Heat of formation + Delta-G solvation = -41.268766 kcal Electronic energy + Delta-G solvation = -22773.652399 eV Core-core repulsion = 19363.788458 eV Total energy + Delta-G solvation = -3409.863941 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.60222 -40.93077 -39.71739 -37.90216 -36.83498 -35.67243 -33.67820 -31.81848 -29.75558 -28.29035 -27.80398 -26.75605 -26.20736 -23.76813 -21.84914 -21.57060 -20.57661 -19.97568 -19.06934 -18.51140 -18.06490 -17.55735 -16.74984 -16.55326 -16.28865 -16.15457 -15.47475 -15.29401 -14.99360 -14.71045 -14.66334 -14.28826 -14.12106 -13.84857 -13.63544 -13.59935 -13.49609 -13.41057 -13.07804 -12.93237 -12.72218 -12.46267 -12.21966 -11.87724 -11.83979 -11.31937 -11.14733 -10.84423 -10.77942 -9.82412 -9.73623 -9.09621 -4.97160 0.75677 1.05125 1.36632 1.59392 1.63436 1.87491 1.96560 2.47567 3.21213 3.22464 3.39853 3.57072 3.57874 3.61879 3.76726 3.90649 4.05460 4.10033 4.21563 4.22293 4.28685 4.38187 4.41774 4.46550 4.63368 4.64426 4.73529 4.78436 4.78999 4.81813 4.88596 4.97758 5.09340 5.12708 5.24598 5.32907 5.45189 5.75146 5.90621 6.19349 6.23839 6.35251 6.70709 7.03635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.110 4.110 3 C -0.031 4.031 4 C 0.591 3.409 5 O -0.520 6.520 6 N -0.604 5.604 7 C 0.078 3.922 8 C 0.126 3.874 9 C -0.128 4.128 10 H 0.093 0.907 11 C -0.119 4.119 12 C 0.074 3.926 13 H 0.079 0.921 14 O -0.560 6.560 15 C -0.157 4.157 16 N -0.512 5.512 17 C 0.009 3.991 18 C -0.060 4.060 19 O -0.535 6.535 20 Si 0.718 3.282 21 C -0.188 4.188 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.379 0.621 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.420 0.580 36 H 0.119 0.881 37 H 0.378 0.622 38 H -0.255 1.255 39 H -0.256 1.256 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -2.454 -3.327 4.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.146 4.146 4 C 0.377 3.623 5 O -0.394 6.394 6 N -0.337 5.337 7 C -0.065 4.065 8 C 0.003 3.997 9 C -0.148 4.148 10 H 0.111 0.889 11 C -0.157 4.157 12 C 0.015 3.985 13 H 0.097 0.903 14 O -0.365 6.365 15 C -0.195 4.195 16 N -0.107 5.107 17 C -0.107 4.107 18 C -0.169 4.169 19 O -0.341 6.341 20 Si 0.616 3.384 21 C -0.212 4.212 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.257 0.743 36 H 0.136 0.864 37 H 0.226 0.774 38 H -0.179 1.179 39 H -0.181 1.181 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.934 -2.553 -2.951 4.012 hybrid contribution 1.250 0.741 -0.997 1.762 sum 0.316 -1.811 -3.949 4.356 Atomic orbital electron populations 1.20264 0.89398 1.02840 1.01990 1.19753 0.95458 0.90573 1.06009 1.19933 0.84451 0.93424 1.16827 1.17182 0.77551 0.84383 0.83222 1.90870 1.53964 1.63037 1.31528 1.47748 1.65092 1.09604 1.11253 1.21856 1.02363 0.95673 0.86614 1.21548 0.96223 0.78300 1.03587 1.22747 0.97560 0.95245 0.99208 0.88917 1.23039 0.97514 0.94054 1.01124 1.23336 0.98136 0.85360 0.91680 0.90278 1.86530 1.38006 1.50861 1.61112 1.23717 0.99982 0.96812 0.98961 1.41671 1.06719 1.06452 1.55821 1.20935 0.96758 0.83033 1.09971 1.24887 0.91800 1.09090 0.91103 1.86601 1.42101 1.89540 1.15887 0.94215 0.82156 0.72490 0.89503 1.20491 0.90753 0.98846 1.11117 0.91431 0.90888 0.92089 0.91919 0.90888 0.90717 0.89757 0.89069 0.90559 0.88760 0.77367 0.88469 0.92045 0.74291 0.86366 0.77360 1.17907 1.18093 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 10.20 36.01 0.37 0.41 16 2 C -0.11 -0.11 5.90 -104.16 -0.61 -0.72 16 3 C -0.03 -0.05 5.07 -81.98 -0.42 -0.47 16 4 C 0.59 1.62 7.16 -12.86 -0.09 1.53 16 5 O -0.52 -3.27 16.41 5.19 0.09 -3.19 16 6 N -0.60 -0.04 2.87 -183.13 -0.53 -0.56 16 7 C 0.08 -0.18 10.19 59.85 0.61 0.43 16 8 C 0.13 -0.05 5.29 -4.04 -0.02 -0.07 16 9 C -0.13 0.08 3.96 -89.80 -0.36 -0.28 16 10 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 11 C -0.12 0.04 7.47 -25.92 -0.19 -0.16 16 12 C 0.07 0.03 5.21 -25.92 -0.14 -0.10 16 13 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 14 O -0.56 -1.04 13.67 -35.23 -0.48 -1.53 16 15 C -0.16 -0.16 7.22 -25.92 -0.19 -0.35 16 16 N -0.51 -0.33 6.10 -5.69 -0.03 -0.36 16 17 C 0.01 0.00 6.47 -81.95 -0.53 -0.53 16 18 C -0.06 0.06 3.08 36.01 0.11 0.17 16 19 O -0.54 0.00 12.88 -35.23 -0.45 -0.46 16 20 Si 0.72 -1.36 30.54 -169.99 -5.19 -6.55 16 21 C -0.19 0.00 9.27 -39.98 -0.37 -0.37 16 22 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 23 H 0.07 -0.10 8.14 -51.92 -0.42 -0.52 16 24 H 0.06 0.04 7.96 -51.93 -0.41 -0.38 16 25 H 0.06 -0.19 7.96 -51.93 -0.41 -0.60 16 26 H 0.07 -0.27 8.08 -51.93 -0.42 -0.69 16 27 H 0.07 -0.13 6.65 -51.93 -0.35 -0.48 16 28 H 0.08 -0.19 8.07 -51.92 -0.42 -0.61 16 29 H 0.09 0.14 7.05 -51.93 -0.37 -0.23 16 30 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.09 0.04 8.10 -51.93 -0.42 -0.38 16 32 H 0.38 -0.76 9.12 45.56 0.42 -0.34 16 33 H 0.10 0.32 7.90 -51.93 -0.41 -0.09 16 34 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.42 -0.13 8.96 -40.82 -0.37 -0.50 16 36 H 0.12 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.38 -1.03 8.70 45.56 0.40 -0.64 16 38 H -0.25 0.03 7.11 56.52 0.40 0.43 16 39 H -0.26 -0.33 7.11 56.52 0.40 0.07 16 40 H 0.15 -0.28 6.17 -52.49 -0.32 -0.60 16 LS Contribution 334.54 15.07 5.04 5.04 Total: 0.00 -8.07 334.54 -8.61 -16.68 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -5.22 Total: -8.58 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.83 Total: -0.50 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -0.56 Total: -0.93 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.85 Total: -5.17 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.19 Total: -6.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -8.07 -8.61 -16.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.586 kcal (2) G-P(sol) polarization free energy of solvation -8.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds