Wall clock time and date at job start Tue Mar 9 2021 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36540 * 126.65002 * 2 1 4 4 C 1.46661 * 125.98226 * 0.03011 * 3 2 1 5 5 O 1.21690 * 120.00156 * 352.66098 * 4 3 2 6 6 N 1.34783 * 119.99533 * 172.65595 * 4 3 2 7 7 C 1.46500 * 120.00217 * 3.49852 * 6 4 3 8 8 C 1.46503 * 119.99840 * 183.49597 * 6 4 3 9 9 C 1.52994 * 109.47006 * 89.99940 * 8 6 4 10 10 H 1.09004 * 112.85309 * 316.19376 * 9 8 6 11 11 C 1.53781 * 113.61694 * 87.50365 * 9 8 6 12 12 C 1.53776 * 87.08363 * 139.97693 * 11 9 8 13 13 H 1.09006 * 113.61299 * 89.11948 * 12 11 9 14 14 O 1.42905 * 113.69462 * 220.00715 * 12 11 9 15 15 C 1.53784 * 113.61431 * 185.00366 * 9 8 6 16 16 O 1.34911 * 108.03064 * 180.02562 * 3 2 1 17 17 C 1.33930 * 109.38025 * 359.72654 * 16 3 2 18 18 C 1.50703 * 125.61852 * 180.27627 * 17 16 3 19 19 O 1.42903 * 109.46772 * 270.19908 * 18 17 16 20 20 C 1.35898 * 116.99625 * 179.97438 * 19 18 17 21 21 C 1.38732 * 120.06136 * 359.72780 * 20 19 18 22 22 C 1.38144 * 119.94548 * 179.73759 * 21 20 19 23 23 C 1.38260 * 120.05875 * 0.51384 * 22 21 20 24 24 C 1.50699 * 119.94734 * 179.74406 * 23 22 21 25 25 O 1.42906 * 109.46893 * 245.01812 * 24 23 22 26 26 Si 1.86300 * 109.46969 * 5.01624 * 24 23 22 27 27 C 1.38272 * 120.10910 * 359.75883 * 23 22 21 28 28 C 1.38145 * 120.05450 * 359.97438 * 27 23 22 29 29 C 1.35127 * 108.76917 * 0.44110 * 17 16 3 30 30 H 1.09004 * 109.47175 * 269.98259 * 1 2 3 31 31 H 1.08998 * 109.47416 * 29.98453 * 1 2 3 32 32 H 1.09004 * 109.47328 * 149.98336 * 1 2 3 33 33 H 1.08998 * 109.46933 * 83.93298 * 7 6 4 34 34 H 1.08996 * 109.46979 * 203.93714 * 7 6 4 35 35 H 1.09000 * 109.47003 * 323.93334 * 7 6 4 36 36 H 1.08991 * 109.47132 * 210.00237 * 8 6 4 37 37 H 1.09003 * 109.46770 * 330.00431 * 8 6 4 38 38 H 1.08991 * 113.61500 * 254.53096 * 11 9 8 39 39 H 1.09005 * 113.61176 * 25.43439 * 11 9 8 40 40 H 0.96690 * 113.99892 * 277.53869 * 14 12 11 41 41 H 1.08995 * 113.61124 * 334.56256 * 15 9 8 42 42 H 1.08996 * 113.61782 * 105.38568 * 15 9 8 43 43 H 1.09002 * 109.47207 * 30.19166 * 18 17 16 44 44 H 1.08991 * 109.47543 * 150.19676 * 18 17 16 45 45 H 1.08007 * 120.02155 * 359.97438 * 21 20 19 46 46 H 1.08004 * 119.96952 * 180.22738 * 22 21 20 47 47 H 1.09001 * 109.46991 * 125.02069 * 24 23 22 48 48 H 0.96700 * 113.99998 * 59.99966 * 25 24 23 49 49 H 1.48497 * 109.99931 * 58.68553 * 26 24 23 50 50 H 1.48502 * 109.99986 * 180.02562 * 26 24 23 51 51 H 1.07999 * 119.97012 * 179.97438 * 27 23 22 52 52 H 1.08003 * 120.02638 * 179.97438 * 28 27 23 53 53 H 1.07998 * 126.44343 * 179.82557 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0955 0.0000 4 6 1.8842 2.4952 0.0006 5 8 0.7050 2.7640 -0.1334 6 7 2.7881 3.4838 0.1498 7 6 4.2154 3.1648 0.2343 8 6 2.3432 4.8775 0.2273 9 6 2.0776 5.2476 1.6879 10 1 1.5328 4.4735 2.2284 11 6 3.3235 5.7591 2.4301 12 6 2.4043 6.7965 3.0961 13 1 1.9497 6.4460 4.0228 14 8 2.9965 8.0908 3.2234 15 6 1.4879 6.6563 1.8690 16 8 3.6005 0.6647 -0.0006 17 6 3.6183 -0.6745 0.0051 18 6 4.8549 -1.5358 0.0123 19 8 5.2524 -1.8098 -1.3327 20 6 6.3591 -2.5795 -1.5043 21 6 7.0516 -3.0566 -0.4009 22 6 8.1732 -3.8434 -0.5781 23 6 8.6119 -4.1468 -1.8536 24 6 9.8391 -5.0005 -2.0440 25 8 10.8660 -4.2263 -2.6671 26 14 10.4371 -5.6064 -0.3869 27 6 7.9267 -3.6679 -2.9550 28 6 6.8014 -2.8852 -2.7832 29 6 2.3448 -1.1262 -0.0004 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3634 -0.8899 -0.5141 33 1 4.6248 3.0616 -0.7706 34 1 4.7364 3.9661 0.7584 35 1 4.3470 2.2294 0.7781 36 1 3.1174 5.5291 -0.1776 37 1 1.4270 4.9991 -0.3507 38 1 3.7433 5.0354 3.1287 39 1 4.0736 6.1987 1.7727 40 1 3.5738 8.1850 3.9933 41 1 1.7363 7.3411 1.0583 42 1 0.4257 6.6569 2.1133 43 1 5.6592 -1.0124 0.5293 44 1 4.6420 -2.4730 0.5264 45 1 6.7119 -2.8162 0.5958 46 1 8.7106 -4.2181 0.2807 47 1 9.5934 -5.8540 -2.6759 48 1 11.1353 -3.4488 -2.1592 49 1 9.3670 -6.3863 0.2852 50 1 11.6474 -6.4492 -0.5608 51 1 8.2716 -3.9059 -3.9504 52 1 6.2668 -2.5111 -3.6438 53 1 2.0306 -2.1595 -0.0006 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_4549632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:40 Heat of formation + Delta-G solvation = -68.508804 kcal Electronic energy + Delta-G solvation = -35315.039306 eV Core-core repulsion = 30508.075875 eV Total energy + Delta-G solvation = -4806.963431 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.181 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.98035 -41.31741 -41.11686 -39.96873 -39.20556 -37.17294 -37.13627 -35.80459 -35.09606 -33.21917 -32.06946 -31.54286 -30.07567 -28.97629 -28.31625 -27.00334 -26.66884 -26.16402 -24.27195 -23.71903 -22.67292 -22.31537 -21.80540 -20.63119 -20.45249 -19.45934 -18.63065 -18.51670 -18.33660 -17.66095 -17.54804 -17.33104 -16.89980 -16.64627 -16.56366 -16.17468 -16.03431 -15.83575 -15.53939 -15.25284 -15.09902 -14.70026 -14.63744 -14.58967 -14.41536 -14.33180 -14.16895 -13.98674 -13.90202 -13.73299 -13.50418 -13.44788 -13.42529 -13.26891 -12.97681 -12.82938 -12.74808 -12.38539 -12.24996 -12.05659 -12.01854 -11.80323 -11.73998 -11.30842 -11.27350 -10.82757 -10.75886 -10.39463 -10.02938 -10.00298 -9.61197 -9.22732 -4.98835 -0.26125 0.28743 0.32035 0.95424 1.32744 1.34643 1.65551 1.83788 1.93780 1.99695 2.36982 2.66865 3.21553 3.29422 3.47193 3.53506 3.57955 3.59947 3.63493 3.73015 3.79481 3.82638 3.94204 3.95883 4.00445 4.09411 4.15541 4.24896 4.28593 4.29836 4.32479 4.42011 4.46346 4.49540 4.50621 4.57194 4.62468 4.69275 4.69636 4.74818 4.78270 4.80587 4.87634 4.96799 4.97698 4.98859 5.06417 5.11012 5.16911 5.26620 5.26943 5.34609 5.46030 5.51583 5.69280 5.70619 6.10381 6.30205 6.80698 6.81169 6.88036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.097 4.097 3 C -0.091 4.091 4 C 0.594 3.406 5 O -0.548 6.548 6 N -0.601 5.601 7 C 0.071 3.929 8 C 0.126 3.874 9 C -0.119 4.119 10 H 0.082 0.918 11 C -0.152 4.152 12 C 0.073 3.927 13 H 0.089 0.911 14 O -0.580 6.580 15 C -0.127 4.127 16 O -0.149 6.149 17 C 0.005 3.995 18 C 0.136 3.864 19 O -0.327 6.327 20 C 0.126 3.874 21 C -0.200 4.200 22 C -0.075 4.075 23 C -0.161 4.161 24 C -0.072 4.072 25 O -0.558 6.558 26 Si 0.778 3.222 27 C -0.062 4.062 28 C -0.164 4.164 29 C -0.188 4.188 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.394 0.606 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.162 0.838 46 H 0.153 0.847 47 H 0.102 0.898 48 H 0.395 0.605 49 H -0.283 1.283 50 H -0.304 1.304 51 H 0.132 0.868 52 H 0.130 0.870 53 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 -0.333 6.176 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.143 4.143 4 C 0.383 3.617 5 O -0.428 6.428 6 N -0.331 5.331 7 C -0.070 4.070 8 C 0.005 3.995 9 C -0.138 4.138 10 H 0.100 0.900 11 C -0.189 4.189 12 C 0.014 3.986 13 H 0.107 0.893 14 O -0.388 6.388 15 C -0.165 4.165 16 O -0.046 6.046 17 C -0.046 4.046 18 C 0.062 3.938 19 O -0.242 6.242 20 C 0.081 3.919 21 C -0.219 4.219 22 C -0.092 4.092 23 C -0.162 4.162 24 C -0.182 4.182 25 O -0.367 6.367 26 Si 0.684 3.316 27 C -0.080 4.080 28 C -0.182 4.182 29 C -0.207 4.207 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.244 0.756 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.179 0.821 46 H 0.170 0.830 47 H 0.120 0.880 48 H 0.245 0.755 49 H -0.210 1.210 50 H -0.233 1.233 51 H 0.150 0.850 52 H 0.148 0.852 53 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.111 -0.888 5.469 6.899 hybrid contribution -0.351 -0.419 -0.238 0.596 sum 3.761 -1.307 5.231 6.574 Atomic orbital electron populations 1.20459 0.87670 1.03835 1.03328 1.20946 0.98328 0.91392 0.99363 1.21788 0.81857 0.94667 1.15972 1.16844 0.85333 0.82535 0.76957 1.90836 1.17366 1.82524 1.52093 1.47834 1.08047 1.06597 1.70642 1.22194 0.78484 1.03307 1.03045 1.21624 1.01690 0.79996 0.96228 1.22594 0.98574 0.96585 0.96050 0.90008 1.23702 0.96716 0.98440 1.00079 1.23372 0.94666 0.82856 0.97661 0.89292 1.86490 1.66901 1.32712 1.52711 1.23089 0.99413 0.95771 0.98205 1.84225 1.27607 1.21875 1.70886 1.22509 0.96851 0.80999 1.04269 1.21261 0.91697 0.98090 0.82725 1.86116 1.42232 1.66416 1.29440 1.19083 0.86477 0.91708 0.94659 1.21495 0.98395 1.03044 0.98927 1.21045 0.95753 0.96114 0.96323 1.20340 0.99275 1.02750 0.93843 1.25146 0.87177 0.96169 1.09683 1.86471 1.54897 1.43782 1.51511 0.93827 0.76781 0.84335 0.76617 1.20919 0.92902 0.94770 0.99440 1.20618 0.99063 1.03007 0.95537 1.21861 0.91081 1.01042 1.06731 0.90131 0.91181 0.89590 0.91876 0.88169 0.89981 0.87816 0.90752 0.90424 0.88624 0.75556 0.89159 0.90889 0.87398 0.85526 0.82055 0.83017 0.88022 0.75517 1.21024 1.23283 0.85048 0.85228 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.38 9.90 71.23 0.71 0.32 16 2 C -0.10 -0.50 6.20 -19.74 -0.12 -0.63 16 3 C -0.09 -0.58 6.76 24.07 0.16 -0.41 16 4 C 0.59 4.85 7.64 86.44 0.66 5.51 16 5 O -0.55 -7.55 14.28 -4.32 -0.06 -7.61 16 6 N -0.60 -1.41 2.87 -851.54 -2.45 -3.86 16 7 C 0.07 -0.22 9.62 127.77 1.23 1.01 16 8 C 0.13 0.07 5.24 86.38 0.45 0.52 16 9 C -0.12 0.05 3.96 -10.27 -0.04 0.01 16 10 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 11 C -0.15 0.55 7.16 31.12 0.22 0.77 16 12 C 0.07 -0.09 5.21 31.12 0.16 0.07 16 13 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 14 O -0.58 -0.44 13.67 -148.98 -2.04 -2.48 16 15 C -0.13 -0.05 7.47 31.12 0.23 0.18 16 16 O -0.15 -0.40 7.30 -5.01 -0.04 -0.44 16 17 C 0.01 0.00 6.94 24.97 0.17 0.17 16 18 C 0.14 -0.78 5.27 71.24 0.38 -0.41 16 19 O -0.33 -0.18 10.12 -92.40 -0.94 -1.12 16 20 C 0.13 -0.03 6.69 22.51 0.15 0.12 16 21 C -0.20 0.96 9.04 22.37 0.20 1.16 16 22 C -0.08 0.35 8.66 22.25 0.19 0.54 16 23 C -0.16 0.23 5.35 -19.85 -0.11 0.13 16 24 C -0.07 0.11 2.80 71.24 0.20 0.31 16 25 O -0.56 0.24 12.83 -148.98 -1.91 -1.67 16 26 Si 0.78 -2.99 29.80 68.60 2.04 -0.95 16 27 C -0.06 -0.04 9.68 22.26 0.22 0.17 16 28 C -0.16 -0.24 9.99 22.37 0.22 -0.02 16 29 C -0.19 -0.15 10.73 22.07 0.24 0.09 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.07 0.59 6.32 -2.39 -0.02 0.57 16 32 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 33 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.10 -0.75 7.71 -2.39 -0.02 -0.76 16 35 H 0.08 -0.22 5.42 -2.39 -0.01 -0.24 16 36 H 0.10 -0.35 7.77 -2.39 -0.02 -0.37 16 37 H 0.07 0.33 7.37 -2.39 -0.02 0.31 16 38 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.10 -0.40 7.90 -2.38 -0.02 -0.42 16 40 H 0.39 -2.95 9.12 -74.06 -0.68 -3.62 16 41 H 0.09 0.09 8.10 -2.39 -0.02 0.07 16 42 H 0.07 0.07 8.14 -2.39 -0.02 0.06 16 43 H 0.11 -1.08 7.65 -2.39 -0.02 -1.10 16 44 H 0.13 -1.40 7.67 -2.39 -0.02 -1.41 16 45 H 0.16 -1.80 6.30 -2.91 -0.02 -1.82 16 46 H 0.15 -1.46 4.90 -2.91 -0.01 -1.47 16 47 H 0.10 0.01 7.96 -2.39 -0.02 -0.01 16 48 H 0.39 -3.43 8.70 -74.06 -0.64 -4.08 16 49 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 50 H -0.30 -1.36 7.11 99.48 0.71 -0.66 16 51 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 52 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 53 H 0.18 -0.74 8.06 -2.91 -0.02 -0.76 16 Total: 0.00 -23.82 433.45 -0.18 -24.00 By element: Atomic # 1 Polarization: -15.20 SS G_CDS: -0.32 Total: -15.52 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.53 Total: 9.64 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -2.45 Total: -3.86 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -4.98 Total: -13.31 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.04 Total: -0.95 kcal Total: -23.82 -0.18 -24.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_4549632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.510 kcal (2) G-P(sol) polarization free energy of solvation -23.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds