Wall clock time and date at job start Tue Mar 9 2021 12:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36000 * 117.00034 * 2 1 4 4 C 1.39156 * 120.07062 * 180.02562 * 3 2 1 5 5 O 1.35988 * 120.07247 * 359.95430 * 4 3 2 6 6 C 1.42905 * 116.99988 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47007 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.72812 * 7 6 5 9 9 N 1.34784 * 119.99774 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99971 * 359.72768 * 9 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 12 12 C 1.52996 * 109.47198 * 90.00083 * 11 9 7 13 13 H 1.08998 * 112.85301 * 43.80372 * 12 11 9 14 14 C 1.53781 * 113.61191 * 174.99549 * 12 11 9 15 15 C 1.53785 * 87.07896 * 139.97981 * 14 12 11 16 16 H 1.09005 * 113.61054 * 89.20163 * 15 14 12 17 17 O 1.42897 * 113.61770 * 220.01971 * 15 14 12 18 18 C 1.53774 * 113.61348 * 272.49471 * 12 11 9 19 19 C 1.38561 * 119.85256 * 180.23713 * 4 3 2 20 20 C 1.38252 * 119.99612 * 359.46219 * 19 4 3 21 21 N 1.48002 * 119.92140 * 180.27773 * 20 19 4 22 22 O 1.21796 * 120.00408 * 0.28044 * 21 20 19 23 23 O 1.21803 * 119.99486 * 180.27688 * 21 20 19 24 24 C 1.38250 * 120.14673 * 0.56127 * 20 19 4 25 25 C 1.50697 * 119.92761 * 179.72072 * 24 20 19 26 26 O 1.42909 * 109.46899 * 74.97224 * 25 24 20 27 27 Si 1.86297 * 109.47533 * 194.97710 * 25 24 20 28 28 C 1.38244 * 120.14474 * 359.69458 * 24 20 19 29 29 H 1.08993 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46609 * 299.99824 * 1 2 3 31 31 H 1.09000 * 109.46849 * 59.99342 * 1 2 3 32 32 H 1.09001 * 109.46781 * 60.00457 * 6 5 4 33 33 H 1.08993 * 109.47173 * 300.00248 * 6 5 4 34 34 H 1.08999 * 109.47256 * 89.99766 * 10 9 7 35 35 H 1.08998 * 109.47416 * 209.99869 * 10 9 7 36 36 H 1.09008 * 109.47058 * 330.00468 * 10 9 7 37 37 H 1.08997 * 109.46865 * 210.00034 * 11 9 7 38 38 H 1.08998 * 109.47058 * 329.99547 * 11 9 7 39 39 H 1.09002 * 113.62023 * 254.52662 * 14 12 11 40 40 H 1.09002 * 113.61582 * 25.35084 * 14 12 11 41 41 H 0.96700 * 114.00280 * 180.02562 * 17 15 14 42 42 H 1.09001 * 113.61951 * 334.56948 * 18 12 11 43 43 H 1.09002 * 113.61781 * 105.47532 * 18 12 11 44 44 H 1.08000 * 120.00328 * 179.72424 * 19 4 3 45 45 H 1.09000 * 109.47239 * 314.98161 * 25 24 20 46 46 H 0.96699 * 113.99624 * 60.00482 * 26 25 24 47 47 H 1.48498 * 110.00019 * 58.67665 * 27 25 24 48 48 H 1.48491 * 110.00098 * 180.02562 * 27 25 24 49 49 H 1.08002 * 119.99406 * 180.02562 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1477 -0.0001 6 6 5.6004 0.3006 -0.0002 7 6 6.2518 -1.0583 0.0010 8 8 5.5669 -2.0592 0.0067 9 7 7.5957 -1.1614 0.0006 10 6 8.4231 0.0476 -0.0069 11 6 8.2291 -2.4824 0.0077 12 6 8.4485 -2.9504 -1.4323 13 1 8.8406 -2.1645 -2.0778 14 6 9.2202 -4.2764 -1.5381 15 6 8.2550 -4.6566 -2.6733 16 1 8.5939 -4.3388 -3.6594 17 8 7.8451 -6.0252 -2.6419 18 6 7.2426 -3.6954 -2.0284 19 6 4.0604 2.5233 0.0044 20 6 3.3030 3.6798 -0.0013 21 7 3.9717 5.0002 -0.0022 22 8 5.1878 5.0670 -0.0030 23 8 3.3057 6.0200 -0.0022 24 6 1.9225 3.6057 -0.0003 25 6 1.1017 4.8696 -0.0003 26 8 1.1344 5.4588 -1.3018 27 14 -0.6592 4.4666 0.4550 28 6 1.2933 2.3748 0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 5.9066 0.8506 0.8897 33 1 5.9066 0.8500 -0.8902 34 1 8.6289 0.3534 1.0189 35 1 9.3624 -0.1580 -0.5202 36 1 7.8933 0.8472 -0.5249 37 1 9.1890 -2.4223 0.5205 38 1 7.5840 -3.1917 0.5261 39 1 10.2530 -4.1558 -1.8651 40 1 9.1271 -4.9076 -0.6543 41 1 7.2382 -6.2705 -3.3537 42 1 6.6076 -4.1683 -1.2793 43 1 6.6788 -3.1057 -2.7513 44 1 5.1387 2.5839 0.0085 45 1 1.5136 5.5702 0.7261 46 1 0.7822 4.8899 -2.0000 47 1 -0.7036 3.8241 1.7931 48 1 -1.4791 5.7046 0.4580 49 1 0.2147 2.3197 0.0004 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:48 Heat of formation + Delta-G solvation = -111.040766 kcal Electronic energy + Delta-G solvation = -36497.770230 eV Core-core repulsion = 31398.162079 eV Total energy + Delta-G solvation = -5099.608150 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.160 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.41483 -42.15153 -41.33856 -40.24050 -39.51482 -39.18902 -37.75498 -37.16038 -36.89591 -35.74880 -32.69782 -32.60220 -30.88364 -29.03607 -28.60303 -27.92237 -27.26690 -26.64122 -25.79050 -24.09498 -23.45930 -23.10368 -20.81078 -20.65153 -20.54341 -19.78532 -19.51791 -18.78529 -18.67832 -18.49501 -18.21798 -17.83616 -17.67673 -17.36969 -17.05934 -16.85639 -16.46837 -16.36479 -16.09448 -15.88369 -15.62077 -15.22129 -14.93268 -14.77094 -14.62949 -14.38336 -14.14310 -13.90002 -13.82124 -13.53495 -13.47228 -13.36245 -13.10593 -13.00086 -12.70511 -12.67812 -12.50361 -12.44184 -12.40968 -12.34487 -12.27897 -12.22085 -11.82302 -11.78954 -11.28482 -10.98928 -10.79455 -10.54287 -10.47349 -9.75601 -9.51045 -5.14068 -1.37588 -0.45215 0.15183 0.29206 1.12257 1.20817 1.37373 1.56901 1.87577 1.88692 1.93221 2.19937 2.96593 3.10056 3.23699 3.27048 3.32279 3.45352 3.53846 3.55303 3.63075 3.77452 3.80928 3.86772 3.91258 3.95506 4.03495 4.09653 4.21489 4.26203 4.27304 4.36345 4.37844 4.40142 4.49028 4.53847 4.65364 4.71789 4.74321 4.80149 4.80493 4.84551 4.92341 4.97976 5.15730 5.24068 5.33194 5.45254 5.59271 6.03972 6.19252 6.46182 6.71156 6.82542 6.97155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.171 3.829 4 C 0.099 3.901 5 O -0.291 6.291 6 C 0.030 3.970 7 C 0.510 3.490 8 O -0.558 6.558 9 N -0.606 5.606 10 C 0.060 3.940 11 C 0.127 3.873 12 C -0.115 4.115 13 H 0.111 0.889 14 C -0.119 4.119 15 C 0.070 3.930 16 H 0.098 0.902 17 O -0.583 6.583 18 C -0.157 4.157 19 C -0.110 4.110 20 C -0.045 4.045 21 N 0.035 4.965 22 O -0.185 6.185 23 O -0.165 6.165 24 C -0.040 4.040 25 C -0.091 4.091 26 O -0.536 6.536 27 Si 0.787 3.213 28 C -0.162 4.162 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.392 0.608 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.182 0.818 45 H 0.115 0.885 46 H 0.393 0.607 47 H -0.272 1.272 48 H -0.290 1.290 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 -2.024 -2.684 3.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.220 6.220 3 C 0.122 3.878 4 C 0.052 3.948 5 O -0.203 6.203 6 C -0.048 4.048 7 C 0.297 3.703 8 O -0.436 6.436 9 N -0.340 5.340 10 C -0.082 4.082 11 C 0.004 3.996 12 C -0.134 4.134 13 H 0.129 0.871 14 C -0.157 4.157 15 C 0.011 3.989 16 H 0.115 0.885 17 O -0.391 6.391 18 C -0.195 4.195 19 C -0.130 4.130 20 C -0.130 4.130 21 N 0.549 4.451 22 O -0.396 6.396 23 O -0.379 6.379 24 C -0.042 4.042 25 C -0.199 4.199 26 O -0.343 6.343 27 Si 0.689 3.311 28 C -0.181 4.181 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.242 0.758 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.199 0.801 45 H 0.132 0.868 46 H 0.242 0.758 47 H -0.198 1.198 48 H -0.217 1.217 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.429 -2.968 -1.265 3.528 hybrid contribution 0.521 0.890 -0.193 1.049 sum -0.908 -2.077 -1.458 2.696 Atomic orbital electron populations 1.23814 0.74658 1.07059 1.04224 1.86337 1.24893 1.24532 1.86197 1.18677 0.89116 0.86418 0.93591 1.17990 0.88877 0.85122 1.02813 1.86303 1.18446 1.26899 1.88687 1.22941 0.78752 0.96454 1.06617 1.20312 0.82970 0.90359 0.76637 1.90768 1.63438 1.39551 1.49794 1.47834 1.04520 1.08883 1.72749 1.22266 0.96636 0.85329 1.03935 1.21542 0.98686 0.83176 0.96156 1.22703 0.96695 0.96810 0.97208 0.87081 1.23036 0.98915 0.95346 0.98417 1.23544 0.95738 0.80704 0.98926 0.88473 1.86481 1.68545 1.27576 1.56540 1.23588 0.97067 0.98509 1.00299 1.20882 1.02925 0.88187 1.00993 1.20549 0.92757 0.81915 1.17741 1.43705 1.00835 1.03416 0.97190 1.94498 0.96493 1.94106 1.54496 1.94579 1.64412 1.25360 1.53538 1.20231 0.91055 0.97677 0.95216 1.25766 1.10575 0.92728 0.90832 1.86671 1.87095 1.44567 1.15924 0.94383 0.71778 0.82155 0.82806 1.21083 1.01771 0.88068 1.07160 0.86130 0.90168 0.88756 0.86023 0.85769 0.90603 0.88549 0.89293 0.87300 0.92015 0.88907 0.90113 0.75799 0.91580 0.92525 0.80128 0.86780 0.75794 1.19810 1.21747 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.16 16 2 O -0.31 0.00 10.28 -79.69 -0.82 -0.82 16 3 C 0.17 -0.14 6.70 22.57 0.15 0.01 16 4 C 0.10 0.10 6.70 22.57 0.15 0.25 16 5 O -0.29 -1.21 9.45 -67.00 -0.63 -1.84 16 6 C 0.03 -0.08 3.78 71.24 0.27 0.19 16 7 C 0.51 1.50 7.75 87.65 0.68 2.17 16 8 O -0.56 -7.32 15.35 16.00 0.25 -7.08 16 9 N -0.61 1.92 2.87 -846.76 -2.43 -0.52 16 10 C 0.06 -0.68 10.24 127.77 1.31 0.63 16 11 C 0.13 -0.25 5.24 86.38 0.45 0.20 16 12 C -0.11 0.26 3.96 -10.27 -0.04 0.22 16 13 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 14 C -0.12 0.15 7.47 31.12 0.23 0.38 16 15 C 0.07 0.06 5.21 31.12 0.16 0.23 16 16 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 17 O -0.58 -2.59 13.67 -148.98 -2.04 -4.63 16 18 C -0.16 -0.50 6.88 31.12 0.21 -0.29 16 19 C -0.11 0.04 8.54 22.35 0.19 0.23 16 20 C -0.05 -0.15 6.85 36.38 0.25 0.10 16 21 N 0.04 0.33 4.45 -46.46 -0.21 0.12 16 22 O -0.18 -1.90 18.44 18.89 0.35 -1.55 16 23 O -0.17 -2.08 14.62 25.10 0.37 -1.71 16 24 C -0.04 0.03 5.26 -19.86 -0.10 -0.08 16 25 C -0.09 0.01 1.74 71.23 0.12 0.13 16 26 O -0.54 -0.49 11.80 -129.62 -1.53 -2.02 16 27 Si 0.79 -4.24 29.91 68.60 2.05 -2.19 16 28 C -0.16 0.84 7.65 22.35 0.17 1.01 16 29 H 0.12 -1.35 8.14 -2.39 -0.02 -1.37 16 30 H 0.08 -1.03 7.66 -2.39 -0.02 -1.05 16 31 H 0.09 -1.42 7.66 -2.39 -0.02 -1.44 16 32 H 0.12 -0.98 7.62 -2.39 -0.02 -1.00 16 33 H 0.12 -1.08 6.92 -2.39 -0.02 -1.09 16 34 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.10 -1.33 8.07 -2.39 -0.02 -1.34 16 36 H 0.09 -1.27 6.44 -2.38 -0.02 -1.29 16 37 H 0.11 -0.76 8.07 -2.39 -0.02 -0.78 16 38 H 0.06 0.26 7.12 -2.39 -0.02 0.24 16 39 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.08 0.11 8.10 -2.39 -0.02 0.09 16 41 H 0.39 -1.28 9.12 -74.06 -0.68 -1.95 16 42 H 0.07 0.64 7.75 -2.39 -0.02 0.62 16 43 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.18 -0.86 5.85 -2.91 -0.02 -0.87 16 45 H 0.12 0.54 6.07 -2.39 -0.01 0.53 16 46 H 0.39 -3.57 8.70 -74.06 -0.64 -4.21 16 47 H -0.27 0.53 7.11 99.48 0.71 1.24 16 48 H -0.29 -0.77 7.11 99.48 0.71 -0.07 16 49 H 0.19 -2.42 3.36 -2.91 -0.01 -2.43 16 Total: 0.00 -34.42 406.24 0.43 -33.99 By element: Atomic # 1 Polarization: -18.06 SS G_CDS: -0.24 Total: -18.30 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.32 Total: 6.55 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -2.64 Total: -0.39 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -4.06 Total: -19.65 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: 2.05 Total: -2.19 kcal Total: -34.42 0.43 -33.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.053 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds