Wall clock time and date at job start Tue Mar 9 2021 12:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35981 * 116.99691 * 2 1 4 4 C 1.38673 * 120.00239 * 179.97438 * 3 2 1 5 5 C 1.38157 * 120.00340 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.00077 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.46816 * 254.98223 * 6 5 4 8 8 Si 1.86294 * 109.47024 * 14.97769 * 6 5 4 9 9 C 1.38674 * 119.99810 * 0.02562 * 5 4 3 10 10 O 1.35981 * 119.99911 * 179.97438 * 9 5 4 11 11 C 1.42899 * 117.00055 * 180.02562 * 10 9 5 12 12 C 1.50700 * 109.47247 * 179.97438 * 11 10 9 13 13 O 1.21275 * 119.99805 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00084 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00025 * 0.02562 * 14 12 11 16 16 C 1.46494 * 120.00280 * 180.02562 * 14 12 11 17 17 C 1.52998 * 109.47484 * 89.99669 * 16 14 12 18 18 H 1.09000 * 112.85012 * 314.67284 * 17 16 14 19 19 C 1.53783 * 113.61240 * 85.86473 * 17 16 14 20 20 C 1.53953 * 87.01960 * 139.95231 * 19 17 16 21 21 H 1.09001 * 113.53767 * 89.19091 * 20 19 17 22 22 O 1.42898 * 113.66703 * 220.06752 * 20 19 17 23 23 C 1.53781 * 113.61571 * 183.47273 * 17 16 14 24 24 C 1.38723 * 120.00087 * 0.02562 * 9 5 4 25 25 C 1.38108 * 119.99987 * 0.23661 * 24 9 5 26 26 H 1.08999 * 109.47213 * 59.99613 * 1 2 3 27 27 H 1.09002 * 109.46532 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47011 * 299.99386 * 1 2 3 29 29 H 1.08001 * 120.00051 * 0.02889 * 4 3 2 30 30 H 1.08999 * 109.47030 * 134.98124 * 6 5 4 31 31 H 0.96709 * 113.99885 * 180.02562 * 7 6 5 32 32 H 1.48496 * 110.00623 * 299.99972 * 8 6 5 33 33 H 1.48506 * 110.00146 * 61.32333 * 8 6 5 34 34 H 1.09000 * 109.47367 * 299.99890 * 11 10 9 35 35 H 1.08997 * 109.47388 * 59.99809 * 11 10 9 36 36 H 1.09001 * 109.46787 * 89.99654 * 15 14 12 37 37 H 1.08998 * 109.46823 * 210.00094 * 15 14 12 38 38 H 1.09000 * 109.46710 * 330.00050 * 15 14 12 39 39 H 1.08994 * 109.47668 * 210.00270 * 16 14 12 40 40 H 1.09009 * 109.46820 * 329.99963 * 16 14 12 41 41 H 1.08996 * 113.61553 * 254.53547 * 19 17 16 42 42 H 1.09002 * 113.61239 * 25.43442 * 19 17 16 43 43 H 0.96703 * 114.00123 * 277.56025 * 22 20 19 44 44 H 1.08997 * 113.61695 * 334.56700 * 23 17 16 45 45 H 1.08998 * 113.61549 * 105.39456 * 23 17 16 46 46 H 1.08002 * 119.99739 * 179.97438 * 24 9 5 47 47 H 1.07998 * 120.00335 * 179.72327 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4311 1.2843 0.0005 5 6 4.0583 2.5154 0.0000 6 6 5.5632 2.5943 0.0000 7 8 6.0205 2.9685 1.3012 8 14 6.2722 0.9322 -0.4532 9 6 3.3029 3.6783 -0.0005 10 8 3.9202 4.8900 -0.0005 11 6 3.0802 6.0460 -0.0005 12 6 3.9343 7.2876 0.0001 13 8 5.1433 7.1919 0.0010 14 7 3.3547 8.5043 -0.0003 15 6 1.8942 8.6199 -0.0008 16 6 4.1849 9.7113 -0.0003 17 6 4.4745 10.1312 -1.4427 18 1 4.7659 9.2940 -2.0769 19 6 3.3789 11.0179 -2.0579 20 6 4.5139 11.8345 -2.7021 21 1 4.8153 11.4636 -3.6817 22 8 4.2852 13.2450 -2.6878 23 6 5.4128 11.3445 -1.5545 24 6 1.9176 3.6056 0.0000 25 6 1.2907 2.3751 0.0060 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 4.0194 0.3786 0.0005 30 1 5.8880 3.3384 -0.7272 31 1 6.9822 3.0392 1.3748 32 1 5.8368 -0.0912 0.5307 33 1 5.8298 0.5461 -1.8172 34 1 2.4510 6.0379 -0.8905 35 1 2.4509 6.0379 0.8894 36 1 1.5317 8.6487 1.0268 37 1 1.6024 9.5357 -0.5149 38 1 1.4620 7.7613 -0.5146 39 1 3.6575 10.5151 0.5132 40 1 5.1240 9.5063 0.5140 41 1 2.7502 10.4972 -2.7801 42 1 2.8037 11.5766 -1.3196 43 1 3.7206 13.5593 -3.4072 44 1 5.3946 11.9928 -0.6784 45 1 6.4239 11.0870 -1.8696 46 1 1.3294 4.5114 0.0000 47 1 0.2122 2.3184 0.0109 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:05 Heat of formation + Delta-G solvation = -119.857989 kcal Electronic energy + Delta-G solvation = -29636.555123 eV Core-core repulsion = 25367.581065 eV Total energy + Delta-G solvation = -4268.974058 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.91759 -41.23692 -40.29128 -39.71348 -38.15001 -37.09202 -36.85769 -35.68212 -33.04735 -31.46230 -30.42484 -28.77743 -28.06667 -27.10647 -26.66024 -26.64607 -24.14556 -23.21592 -22.38692 -20.63529 -20.39710 -19.55163 -18.78768 -18.51271 -18.45666 -18.24337 -17.63661 -17.56917 -17.11842 -16.75774 -16.47093 -16.09993 -15.91421 -15.60891 -15.47310 -15.32772 -15.02540 -14.79486 -14.47088 -14.09535 -14.05356 -13.95939 -13.75606 -13.54915 -13.48893 -13.32429 -13.22814 -13.04478 -12.80747 -12.62146 -12.55752 -12.39320 -12.06175 -11.81721 -11.79767 -11.52991 -11.28369 -10.98077 -10.74658 -10.32138 -10.24627 -9.75530 -8.93111 -5.00274 -0.09480 0.21768 1.24760 1.38860 1.40191 1.58896 1.90043 2.19522 2.39661 2.42231 3.25434 3.31442 3.41439 3.52180 3.56381 3.59198 3.73545 3.80432 3.86395 3.94461 3.95333 3.98238 4.03017 4.12886 4.21694 4.29023 4.29512 4.32299 4.32696 4.33428 4.54866 4.62022 4.63612 4.67320 4.77158 4.79109 4.81226 4.87186 4.90267 4.99338 5.00374 5.06381 5.11213 5.28485 5.33066 5.49398 6.05901 6.21892 6.33340 6.85695 6.87798 6.99448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.086 3.914 4 C -0.142 4.142 5 C -0.090 4.090 6 C -0.075 4.075 7 O -0.560 6.560 8 Si 0.780 3.220 9 C 0.104 3.896 10 O -0.305 6.305 11 C 0.037 3.963 12 C 0.509 3.491 13 O -0.566 6.566 14 N -0.605 5.605 15 C 0.061 3.939 16 C 0.128 3.872 17 C -0.118 4.118 18 H 0.078 0.922 19 C -0.148 4.148 20 C 0.072 3.928 21 H 0.087 0.913 22 O -0.580 6.580 23 C -0.130 4.130 24 C -0.160 4.160 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.399 0.601 32 H -0.287 1.287 33 H -0.286 1.286 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.394 0.606 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.173 0.827 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 2.958 -2.303 8.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.041 3.959 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.184 4.184 7 O -0.370 6.370 8 Si 0.685 3.315 9 C 0.058 3.942 10 O -0.218 6.218 11 C -0.041 4.041 12 C 0.297 3.703 13 O -0.444 6.444 14 N -0.339 5.339 15 C -0.080 4.080 16 C 0.006 3.994 17 C -0.137 4.137 18 H 0.096 0.904 19 C -0.186 4.186 20 C 0.013 3.987 21 H 0.105 0.895 22 O -0.388 6.388 23 C -0.168 4.168 24 C -0.178 4.178 25 C -0.174 4.174 26 H 0.089 0.911 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.249 0.751 32 H -0.215 1.215 33 H -0.213 1.213 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.245 0.755 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.191 0.809 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.050 1.929 -1.874 7.546 hybrid contribution -0.893 0.383 -0.492 1.089 sum -7.943 2.312 -2.366 8.605 Atomic orbital electron populations 1.23395 0.75941 1.05739 1.02671 1.86073 1.23893 1.26515 1.89079 1.18921 0.91608 0.85659 0.99684 1.20132 0.93012 0.96649 1.06281 1.18698 0.95003 0.90442 1.04977 1.24754 0.92369 1.12110 0.89117 1.86440 1.29081 1.92695 1.28742 0.94358 0.88786 0.72310 0.76050 1.18773 0.91563 0.84557 0.99275 1.86183 1.35114 1.11618 1.88893 1.22785 0.92819 0.82325 1.06161 1.20486 0.88205 0.85318 0.76320 1.90746 1.16504 1.87006 1.50180 1.47814 1.08926 1.04403 1.72721 1.22259 0.76610 1.05312 1.03836 1.21502 0.95767 0.86158 0.96014 1.22569 0.97926 0.96303 0.96940 0.90354 1.23705 0.96635 0.97381 1.00836 1.23412 0.96669 0.80499 0.98113 0.89497 1.86492 1.73663 1.22714 1.55965 1.23097 0.98256 0.96238 0.99169 1.21463 0.92023 1.00136 1.04177 1.21434 1.01729 0.90543 1.03652 0.91075 0.86702 0.91217 0.85748 0.90793 0.75081 1.21452 1.21337 0.85941 0.86435 0.90613 0.88988 0.89008 0.87799 0.91759 0.90207 0.88487 0.75549 0.89208 0.91288 0.80950 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.34 -2.35 10.50 -93.34 -0.98 -3.33 16 3 C 0.09 0.66 6.69 22.49 0.15 0.81 16 4 C -0.14 -1.58 8.59 22.35 0.19 -1.39 16 5 C -0.09 -0.98 5.30 -19.78 -0.10 -1.08 16 6 C -0.07 -0.60 2.36 71.24 0.17 -0.43 16 7 O -0.56 -4.90 12.86 -148.98 -1.92 -6.82 16 8 Si 0.78 3.04 30.20 68.60 2.07 5.11 16 9 C 0.10 0.81 6.66 22.49 0.15 0.96 16 10 O -0.30 -2.73 9.00 -74.30 -0.67 -3.40 16 11 C 0.04 -0.02 3.77 71.24 0.27 0.25 16 12 C 0.51 2.49 7.75 87.66 0.68 3.17 16 13 O -0.57 -8.89 16.08 16.02 0.26 -8.63 16 14 N -0.61 1.21 2.87 -846.76 -2.43 -1.23 16 15 C 0.06 -0.67 10.24 127.77 1.31 0.64 16 16 C 0.13 -0.09 5.23 86.38 0.45 0.36 16 17 C -0.12 0.11 3.96 -10.27 -0.04 0.07 16 18 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 19 C -0.15 0.70 6.96 31.18 0.22 0.92 16 20 C 0.07 -0.10 5.21 31.18 0.16 0.06 16 21 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 22 O -0.58 -0.33 13.67 -148.98 -2.04 -2.37 16 23 C -0.13 -0.08 7.48 31.12 0.23 0.15 16 24 C -0.16 -0.14 9.03 22.35 0.20 0.06 16 25 C -0.16 -0.21 9.03 22.36 0.20 -0.01 16 26 H 0.07 -0.43 7.67 -2.39 -0.02 -0.45 16 27 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 28 H 0.07 -0.40 7.65 -2.39 -0.02 -0.41 16 29 H 0.13 1.49 4.90 -2.91 -0.01 1.48 16 30 H 0.07 0.58 7.82 -2.39 -0.02 0.56 16 31 H 0.40 -0.56 8.74 -74.05 -0.65 -1.20 16 32 H -0.29 -2.84 6.75 99.48 0.67 -2.17 16 33 H -0.29 -2.54 7.11 99.48 0.71 -1.83 16 34 H 0.12 -0.92 6.92 -2.39 -0.02 -0.94 16 35 H 0.12 -0.71 7.62 -2.39 -0.02 -0.73 16 36 H 0.08 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H 0.09 -1.18 7.54 -2.39 -0.02 -1.19 16 38 H 0.09 -1.35 6.44 -2.39 -0.02 -1.37 16 39 H 0.10 -0.52 7.80 -2.39 -0.02 -0.54 16 40 H 0.06 0.31 7.42 -2.38 -0.02 0.29 16 41 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.10 -0.55 7.92 -2.39 -0.02 -0.57 16 43 H 0.39 -3.05 9.12 -74.06 -0.68 -3.73 16 44 H 0.09 0.11 8.10 -2.39 -0.02 0.09 16 45 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.17 -1.35 6.29 -2.91 -0.02 -1.37 16 47 H 0.17 -0.95 6.29 -2.91 -0.02 -0.97 16 Total: 0.00 -31.61 384.22 -0.66 -32.28 By element: Atomic # 1 Polarization: -16.91 SS G_CDS: -0.31 Total: -17.22 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.35 Total: 5.61 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -2.43 Total: -1.23 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -5.34 Total: -24.55 kcal Atomic # 14 Polarization: 3.04 SS G_CDS: 2.07 Total: 5.11 kcal Total: -31.61 -0.66 -32.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.582 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds