Wall clock time and date at job start Tue Mar 9 2021 12:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00272 * 2 1 4 4 C 1.38608 * 120.02692 * 180.02562 * 3 2 1 5 5 C 1.38656 * 119.89019 * 180.02562 * 4 3 2 6 6 O 1.35895 * 120.02858 * 180.02562 * 5 4 3 7 7 C 1.42908 * 116.99828 * 359.97438 * 6 5 4 8 8 C 1.50709 * 109.46815 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99629 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99338 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00816 * 359.97438 * 10 8 7 12 12 C 1.46502 * 119.99488 * 179.97438 * 10 8 7 13 13 C 1.53004 * 109.47058 * 90.00274 * 12 10 8 14 14 H 1.08999 * 112.84896 * 45.32837 * 13 12 10 15 15 C 1.53781 * 113.61564 * 176.53083 * 13 12 10 16 16 C 1.53783 * 87.08288 * 139.97769 * 15 13 12 17 17 H 1.09000 * 113.61146 * 89.19853 * 16 15 13 18 18 O 1.42897 * 113.61244 * 220.01689 * 16 15 13 19 19 C 1.53783 * 113.61229 * 274.13644 * 13 12 10 20 20 C 1.38758 * 119.94445 * 359.97438 * 5 4 3 21 21 C 1.50701 * 119.97167 * 180.02562 * 20 5 4 22 22 O 1.42903 * 109.46878 * 75.00220 * 21 20 5 23 23 Si 1.86300 * 109.46948 * 195.00439 * 21 20 5 24 24 C 1.38196 * 120.05312 * 0.27882 * 20 5 4 25 25 C 1.38154 * 120.10641 * 359.44904 * 24 20 5 26 26 H 1.09008 * 109.47109 * 60.00319 * 1 2 3 27 27 H 1.08997 * 109.47644 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47147 * 300.00371 * 1 2 3 29 29 H 1.07999 * 120.05525 * 0.03569 * 4 3 2 30 30 H 1.09001 * 109.47209 * 299.99749 * 7 6 5 31 31 H 1.09001 * 109.46843 * 60.00605 * 7 6 5 32 32 H 1.08999 * 109.46768 * 89.99728 * 11 10 8 33 33 H 1.08993 * 109.47440 * 210.00190 * 11 10 8 34 34 H 1.09007 * 109.46869 * 330.00237 * 11 10 8 35 35 H 1.09002 * 109.47313 * 209.99684 * 12 10 8 36 36 H 1.08999 * 109.47412 * 330.00077 * 12 10 8 37 37 H 1.08998 * 113.61287 * 254.53070 * 15 13 12 38 38 H 1.09005 * 113.61412 * 25.34754 * 15 13 12 39 39 H 0.96711 * 113.99752 * 180.02562 * 18 16 15 40 40 H 1.09000 * 113.61613 * 334.56810 * 19 13 12 41 41 H 1.08997 * 113.61598 * 105.46861 * 19 13 12 42 42 H 1.09001 * 109.46927 * 315.00156 * 21 20 5 43 43 H 0.96700 * 113.99509 * 179.97438 * 22 21 20 44 44 H 1.48498 * 109.99634 * 178.68340 * 23 21 20 45 45 H 1.48502 * 109.99691 * 300.00084 * 23 21 20 46 46 H 1.07993 * 119.94486 * 179.72346 * 24 20 5 47 47 H 1.08005 * 119.96776 * 180.25059 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4301 1.2840 -0.0005 5 6 4.0567 2.5209 0.0000 6 8 5.4136 2.5958 -0.0010 7 6 6.1316 1.3602 -0.0021 8 6 7.6126 1.6398 -0.0026 9 8 8.0135 2.7845 -0.0025 10 7 8.4911 0.6179 -0.0041 11 6 8.0068 -0.7647 -0.0047 12 6 9.9307 0.8897 -0.0051 13 6 10.4331 0.9831 1.4371 14 1 10.0505 0.1833 2.0712 15 6 11.9538 1.1833 1.5480 16 6 11.6618 2.1638 2.6962 17 1 11.6164 1.6879 3.6758 18 8 12.4931 3.3260 2.6818 19 6 10.2805 2.3839 2.0530 20 6 3.2972 3.6821 0.0005 21 6 3.9776 5.0268 0.0005 22 8 4.5032 5.2946 -1.3010 23 14 2.7442 6.3467 0.4560 24 6 1.9173 3.6065 0.0064 25 6 1.2907 2.3752 0.0002 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 4.0196 0.3790 -0.0015 30 1 5.8707 0.7876 0.8879 31 1 5.8693 0.7884 -0.8922 32 1 7.8858 -1.1067 -1.0326 33 1 8.7270 -1.4022 0.5080 34 1 7.0471 -0.8137 0.5098 35 1 10.4525 0.0829 -0.5199 36 1 10.1223 1.8320 -0.5183 37 1 12.4901 0.2885 1.8637 38 1 12.3971 1.6553 0.6712 39 1 12.3144 3.9463 3.4019 40 1 10.2653 3.1861 1.3152 41 1 9.4679 2.4570 2.7758 42 1 4.7903 5.0227 0.7269 43 1 4.9556 6.1460 -1.3749 44 1 3.4101 7.6736 0.4906 45 1 1.6310 6.3624 -0.5267 46 1 1.3278 4.5113 0.0113 47 1 0.2121 2.3188 0.0006 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_4974312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:08 Heat of formation + Delta-G solvation = -119.747060 kcal Electronic energy + Delta-G solvation = -29968.062173 eV Core-core repulsion = 25699.092925 eV Total energy + Delta-G solvation = -4268.969248 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89025 -41.21119 -40.22632 -39.65577 -38.29006 -37.14624 -36.87234 -35.74390 -32.43240 -31.65661 -30.53542 -28.71884 -28.33379 -27.22174 -26.63256 -26.08753 -24.10279 -23.15251 -22.37728 -20.57643 -20.45949 -19.93917 -18.59203 -18.55681 -18.19828 -17.99043 -17.60252 -17.24310 -16.96327 -16.87663 -16.68435 -16.42370 -15.87944 -15.62610 -15.59216 -15.24586 -15.06742 -14.74344 -14.49303 -14.10231 -13.99673 -13.80309 -13.59850 -13.51600 -13.44195 -13.31294 -13.21175 -13.06634 -12.69884 -12.50124 -12.43098 -12.41231 -12.01135 -11.83005 -11.76316 -11.62422 -11.29059 -10.93538 -10.79442 -10.42666 -9.74517 -9.72365 -9.12283 -4.96113 0.17193 0.28316 1.28750 1.38165 1.40455 1.57410 1.89732 2.21111 2.43862 2.51383 3.24417 3.30877 3.45600 3.54486 3.62593 3.69460 3.78779 3.82824 3.89368 3.94750 3.96307 4.03497 4.16740 4.25374 4.27410 4.28898 4.34897 4.37195 4.42466 4.44336 4.49127 4.59373 4.65525 4.73666 4.78952 4.80075 4.83943 4.91294 4.97604 4.98778 5.15736 5.20574 5.27503 5.34895 5.43234 5.49497 6.07198 6.23373 6.35399 6.57437 6.82070 7.00242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.166 3.834 4 C -0.251 4.251 5 C 0.175 3.825 6 O -0.303 6.303 7 C 0.037 3.963 8 C 0.509 3.491 9 O -0.560 6.560 10 N -0.607 5.607 11 C 0.062 3.938 12 C 0.126 3.874 13 C -0.114 4.114 14 H 0.113 0.887 15 C -0.119 4.119 16 C 0.071 3.929 17 H 0.099 0.901 18 O -0.584 6.584 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.081 4.081 22 O -0.557 6.557 23 Si 0.780 3.220 24 C -0.042 4.042 25 C -0.237 4.237 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.392 0.608 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.387 0.613 44 H -0.291 1.291 45 H -0.279 1.279 46 H 0.152 0.848 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -7.577 4.332 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.119 3.881 4 C -0.270 4.270 5 C 0.129 3.871 6 O -0.215 6.215 7 C -0.040 4.040 8 C 0.296 3.704 9 O -0.438 6.438 10 N -0.341 5.341 11 C -0.080 4.080 12 C 0.004 3.996 13 C -0.133 4.133 14 H 0.131 0.869 15 C -0.156 4.156 16 C 0.012 3.988 17 H 0.117 0.883 18 O -0.392 6.392 19 C -0.196 4.196 20 C -0.162 4.162 21 C -0.189 4.189 22 O -0.366 6.366 23 Si 0.683 3.317 24 C -0.059 4.059 25 C -0.256 4.256 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.236 0.764 44 H -0.218 1.218 45 H -0.206 1.206 46 H 0.169 0.831 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.138 -7.188 3.436 8.978 hybrid contribution 0.636 0.824 -0.515 1.161 sum -3.503 -6.364 2.921 7.829 Atomic orbital electron populations 1.23413 0.75983 1.05773 1.02682 1.86051 1.23764 1.26338 1.87909 1.18831 0.91610 0.84969 0.92643 1.20532 0.93425 0.97303 1.15744 1.18580 0.81792 0.93201 0.93540 1.86192 1.15428 1.31775 1.88118 1.22780 0.88928 0.86325 1.05999 1.20425 0.88338 0.85156 0.76438 1.90743 1.80419 1.22778 1.49852 1.47822 1.06101 1.07257 1.72879 1.22242 1.02129 0.79809 1.03785 1.21533 0.79079 1.02734 0.96234 1.22701 0.96034 0.97570 0.97019 0.86934 1.23024 0.95501 0.98891 0.98233 1.23576 0.89354 0.86952 0.98931 0.88311 1.86484 1.62204 1.34445 1.56027 1.23619 0.97816 0.97922 1.00235 1.18755 0.93175 0.92325 1.11972 1.24997 1.04725 1.01890 0.87243 1.86559 1.76420 1.42785 1.30876 0.94183 0.76618 0.73529 0.87361 1.20898 0.92010 0.98856 0.94164 1.21387 1.01692 0.91102 1.11408 0.91653 0.86379 0.90999 0.82730 0.86049 0.86951 0.90826 0.88400 0.89370 0.87275 0.92330 0.88744 0.90268 0.75798 0.91812 0.92501 0.91642 0.76358 1.21789 1.20613 0.83106 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.49 10.49 -92.40 -0.97 -1.46 16 3 C 0.17 0.54 6.68 22.49 0.15 0.69 16 4 C -0.25 -0.98 8.97 22.46 0.20 -0.78 16 5 C 0.18 1.40 6.66 22.49 0.15 1.55 16 6 O -0.30 -3.07 8.99 -73.34 -0.66 -3.73 16 7 C 0.04 0.07 3.77 71.24 0.27 0.33 16 8 C 0.51 3.21 7.75 87.66 0.68 3.89 16 9 O -0.56 -9.24 15.17 16.01 0.24 -9.00 16 10 N -0.61 0.50 2.87 -846.76 -2.43 -1.93 16 11 C 0.06 -0.60 10.24 127.77 1.31 0.71 16 12 C 0.13 -0.01 5.23 86.38 0.45 0.44 16 13 C -0.11 0.11 3.96 -10.27 -0.04 0.07 16 14 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 15 C -0.12 0.02 7.48 31.12 0.23 0.25 16 16 C 0.07 0.14 5.21 31.18 0.16 0.30 16 17 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 18 O -0.58 -3.24 13.67 -148.98 -2.04 -5.28 16 19 C -0.16 -0.75 6.86 31.18 0.21 -0.54 16 20 C -0.16 -1.24 5.31 -19.75 -0.10 -1.35 16 21 C -0.08 -0.60 2.36 71.24 0.17 -0.43 16 22 O -0.56 -6.18 12.86 -148.98 -1.92 -8.10 16 23 Si 0.78 1.27 30.18 68.60 2.07 3.34 16 24 C -0.04 -0.14 8.65 22.24 0.19 0.05 16 25 C -0.24 -0.32 9.04 22.38 0.20 -0.11 16 26 H 0.06 -0.45 7.66 -2.38 -0.02 -0.47 16 27 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 28 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 29 H 0.16 -0.17 6.30 -2.91 -0.02 -0.19 16 30 H 0.12 -0.56 6.92 -2.39 -0.02 -0.57 16 31 H 0.11 -0.29 7.63 -2.39 -0.02 -0.31 16 32 H 0.07 -0.81 8.14 -2.39 -0.02 -0.82 16 33 H 0.10 -1.25 8.07 -2.39 -0.02 -1.27 16 34 H 0.09 -1.10 6.44 -2.38 -0.02 -1.12 16 35 H 0.11 -0.59 8.07 -2.39 -0.02 -0.61 16 36 H 0.06 0.38 7.15 -2.39 -0.02 0.37 16 37 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.08 0.22 8.10 -2.38 -0.02 0.20 16 39 H 0.39 -0.86 9.12 -74.05 -0.68 -1.53 16 40 H 0.06 0.75 7.64 -2.39 -0.02 0.73 16 41 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 42 H 0.07 0.54 7.82 -2.39 -0.02 0.52 16 43 H 0.39 1.48 8.74 -74.06 -0.65 0.84 16 44 H -0.29 -1.81 7.11 99.48 0.71 -1.10 16 45 H -0.28 -1.52 6.75 99.48 0.67 -0.85 16 46 H 0.15 -0.05 4.89 -2.91 -0.01 -0.07 16 47 H 0.16 -0.69 6.29 -2.91 -0.02 -0.70 16 Total: 0.00 -28.86 383.45 -0.66 -29.52 By element: Atomic # 1 Polarization: -9.15 SS G_CDS: -0.31 Total: -9.46 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 5.35 Total: 6.10 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -2.43 Total: -1.93 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -5.34 Total: -27.57 kcal Atomic # 14 Polarization: 1.27 SS G_CDS: 2.07 Total: 3.34 kcal Total: -28.86 -0.66 -29.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_4974312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.224 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds