Wall clock time and date at job start Tue Mar 9 2021 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99509 * 2 1 4 4 C 1.53003 * 109.47090 * 270.00040 * 3 2 1 5 5 H 1.09005 * 112.84737 * 45.34149 * 4 3 2 6 6 C 1.53783 * 113.61301 * 176.53150 * 4 3 2 7 7 C 1.53781 * 87.08013 * 139.98584 * 6 4 3 8 8 H 1.08998 * 113.61176 * 89.20048 * 7 6 4 9 9 O 1.42900 * 113.61294 * 220.02154 * 7 6 4 10 10 C 1.53773 * 113.61881 * 274.13908 * 4 3 2 11 11 C 1.34769 * 120.00179 * 180.02562 * 2 1 3 12 12 O 1.21280 * 120.00097 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00219 * 359.97438 * 11 2 1 14 14 N 1.46498 * 109.47268 * 180.02562 * 13 11 2 15 15 C 1.36835 * 125.06518 * 265.22977 * 14 13 11 16 16 C 1.34229 * 109.93982 * 180.20547 * 15 14 13 17 17 C 1.50705 * 126.50090 * 179.87484 * 16 15 14 18 18 O 1.42894 * 109.47171 * 104.68600 * 17 16 15 19 19 Si 1.86298 * 109.46780 * 344.68041 * 17 16 15 20 20 C 1.46488 * 107.00074 * 359.60828 * 16 15 14 21 21 C 1.39593 * 134.03387 * 180.24364 * 20 16 15 22 22 C 1.36665 * 119.76247 * 179.97438 * 21 20 16 23 23 C 1.38786 * 120.52659 * 0.03947 * 22 21 20 24 24 C 1.37783 * 120.67017 * 359.97438 * 23 22 21 25 25 C 1.37688 * 125.06289 * 84.99901 * 14 13 11 26 26 H 1.09003 * 109.46192 * 269.99280 * 1 2 3 27 27 H 1.08998 * 109.47536 * 29.99204 * 1 2 3 28 28 H 1.08998 * 109.46998 * 149.99947 * 1 2 3 29 29 H 1.08996 * 109.47601 * 30.00690 * 3 2 1 30 30 H 1.09006 * 109.46832 * 150.00565 * 3 2 1 31 31 H 1.08997 * 113.61183 * 254.53515 * 6 4 3 32 32 H 1.08998 * 113.61052 * 25.43407 * 6 4 3 33 33 H 0.96701 * 114.00048 * 180.02562 * 9 7 6 34 34 H 1.09001 * 113.61713 * 334.56995 * 10 4 3 35 35 H 1.09007 * 113.61427 * 105.47327 * 10 4 3 36 36 H 1.08995 * 109.47510 * 59.99796 * 13 11 2 37 37 H 1.09001 * 109.46805 * 299.99854 * 13 11 2 38 38 H 1.08005 * 125.02557 * 0.05412 * 15 14 13 39 39 H 1.09004 * 109.46779 * 224.68923 * 17 16 15 40 40 H 0.96709 * 113.99337 * 180.02562 * 18 17 16 41 41 H 1.48506 * 109.99834 * 60.00830 * 19 17 16 42 42 H 1.48502 * 110.00011 * 181.32094 * 19 17 16 43 43 H 1.07996 * 120.11969 * 359.97352 * 21 20 16 44 44 H 1.08000 * 119.73165 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.66374 * 180.02562 * 23 22 21 46 46 H 1.08007 * 120.11332 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5713 1.6134 -2.0769 6 6 3.1442 3.0794 -1.5545 7 6 3.9734 2.4786 -2.7018 8 1 3.5096 2.5922 -3.6816 9 8 5.3451 2.8788 -2.6872 10 6 3.7242 1.1028 -2.0573 11 6 2.1389 -1.1671 -0.0005 12 8 3.3517 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0005 14 7 2.3375 -3.5857 -0.0005 15 6 2.7776 -4.2438 -1.1166 16 6 3.6384 -5.2126 -0.7672 17 6 4.3439 -6.1639 -1.6992 18 8 5.7111 -5.7712 -1.8353 19 14 3.5174 -6.1252 -3.3684 20 6 3.7670 -5.1658 0.6912 21 6 4.5015 -5.8993 1.6246 22 6 4.4001 -5.6000 2.9542 23 6 3.5720 -4.5727 3.3844 24 6 2.8380 -3.8363 2.4804 25 6 2.9262 -4.1231 1.1222 26 1 -0.3632 -0.0001 1.0278 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5139 30 1 3.1500 1.1385 0.5138 31 1 2.4770 3.8811 -1.8712 32 1 3.7369 3.3420 -0.6782 33 1 5.8717 2.5044 -3.4066 34 1 4.4759 0.8240 -1.3189 35 1 3.5247 0.3111 -2.7795 36 1 0.7585 -2.5299 -0.8902 37 1 0.7592 -2.5302 0.8897 38 1 2.4751 -4.0186 -2.1287 39 1 4.2947 -7.1741 -1.2928 40 1 6.2271 -6.3403 -2.4228 41 1 3.5778 -4.7531 -3.9333 42 1 4.1838 -7.0826 -4.2874 43 1 5.1474 -6.7005 1.2972 44 1 4.9689 -6.1675 3.6759 45 1 3.5028 -4.3478 4.4385 46 1 2.1967 -3.0385 2.8251 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12312124_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:41 Heat of formation + Delta-G solvation = -9.245837 kcal Electronic energy + Delta-G solvation = -28984.093665 eV Core-core repulsion = 25035.402302 eV Total energy + Delta-G solvation = -3948.691363 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56051 -41.16797 -39.95308 -38.11810 -37.77257 -36.90560 -35.78345 -34.20249 -31.63233 -30.33112 -30.07457 -28.59977 -27.30900 -26.71274 -25.64524 -23.94311 -23.48142 -22.49426 -20.71476 -20.59055 -20.34048 -18.68437 -18.52693 -18.30655 -18.09589 -17.74747 -16.97722 -16.77342 -16.44035 -16.25418 -15.83167 -15.60700 -15.28478 -14.92675 -14.85036 -14.78315 -14.70127 -14.27583 -14.15101 -14.04032 -13.57549 -13.54529 -13.43649 -13.25157 -13.06267 -12.75640 -12.67730 -12.56584 -12.53065 -12.45146 -12.11517 -11.87721 -11.73279 -11.34062 -11.07382 -10.85008 -10.54778 -10.36405 -9.71675 -9.17004 -8.64585 -4.92917 0.12398 0.62856 1.29703 1.36740 1.44424 1.59742 1.70407 1.95490 2.05129 2.91433 3.20835 3.33484 3.52945 3.53457 3.57973 3.65157 3.74869 3.77206 3.79821 3.89953 3.98679 4.06401 4.21286 4.22701 4.26181 4.31954 4.33641 4.38484 4.46652 4.55770 4.64357 4.68647 4.70284 4.75065 4.77741 4.81916 4.88633 4.92497 4.96554 5.11201 5.12744 5.33180 5.47588 5.49991 5.64740 5.71977 5.74363 6.13179 6.20844 6.33202 6.66158 6.75114 7.04227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.608 5.608 3 C 0.127 3.873 4 C -0.110 4.110 5 H 0.115 0.885 6 C -0.119 4.119 7 C 0.069 3.931 8 H 0.100 0.900 9 O -0.584 6.584 10 C -0.157 4.157 11 C 0.484 3.516 12 O -0.568 6.568 13 C 0.090 3.910 14 N -0.466 5.466 15 C 0.073 3.927 16 C -0.180 4.180 17 C -0.058 4.058 18 O -0.565 6.565 19 Si 0.781 3.219 20 C -0.117 4.117 21 C -0.087 4.087 22 C -0.153 4.153 23 C -0.107 4.107 24 C -0.134 4.134 25 C 0.091 3.909 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.392 0.608 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.161 0.839 37 H 0.143 0.857 38 H 0.191 0.809 39 H 0.080 0.920 40 H 0.389 0.611 41 H -0.292 1.292 42 H -0.284 1.284 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 0.143 -1.936 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.341 5.341 3 C 0.004 3.996 4 C -0.129 4.129 5 H 0.133 0.867 6 C -0.157 4.157 7 C 0.010 3.990 8 H 0.117 0.883 9 O -0.392 6.392 10 C -0.195 4.195 11 C 0.271 3.729 12 O -0.446 6.446 13 C -0.034 4.034 14 N -0.148 5.148 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.166 4.166 18 O -0.375 6.375 19 Si 0.685 3.315 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.126 4.126 24 C -0.155 4.155 25 C -0.014 4.014 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.208 0.792 39 H 0.098 0.902 40 H 0.239 0.761 41 H -0.219 1.219 42 H -0.211 1.211 43 H 0.140 0.860 44 H 0.157 0.843 45 H 0.164 0.836 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.995 1.343 -1.851 11.231 hybrid contribution 2.124 -0.445 -0.437 2.214 sum -8.872 0.898 -2.288 9.206 Atomic orbital electron populations 1.22250 0.76202 1.05627 1.03828 1.47956 1.08732 1.04814 1.72625 1.21450 0.97247 0.85024 0.95880 1.22683 0.97365 0.95683 0.97210 0.86737 1.23026 0.97597 0.96993 0.98072 1.23608 0.82174 0.94144 0.99030 0.88254 1.86484 1.21916 1.74757 1.56061 1.23589 0.98564 0.97260 1.00086 1.21505 0.88155 0.86896 0.76359 1.90804 1.15985 1.87557 1.50226 1.22034 0.90368 0.81302 1.09695 1.43427 1.38809 1.28315 1.04277 1.21877 0.98362 0.93154 0.91854 1.19747 1.04191 1.03079 0.91725 1.24485 0.85062 0.97999 1.09050 1.86631 1.21863 1.58535 1.70422 0.94258 0.88522 0.77389 0.71342 1.19360 1.00480 0.98722 0.93586 1.20455 0.98155 0.99199 0.92717 1.20928 1.01135 0.99622 0.95511 1.21137 0.96013 0.95292 1.00110 1.20237 1.03699 1.02394 0.89147 1.18409 0.97667 0.96164 0.89123 0.90792 0.88961 0.88608 0.87542 0.92941 0.88611 0.90479 0.75894 0.92325 0.92726 0.82191 0.83901 0.79240 0.90209 0.76121 1.21903 1.21067 0.86027 0.84322 0.83581 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.81 10.24 127.77 1.31 0.50 16 2 N -0.61 2.21 2.87 -846.74 -2.43 -0.22 16 3 C 0.13 -0.13 5.23 86.38 0.45 0.32 16 4 C -0.11 0.16 3.96 -10.27 -0.04 0.11 16 5 H 0.11 -0.62 8.14 -2.38 -0.02 -0.64 16 6 C -0.12 0.00 7.48 31.12 0.23 0.23 16 7 C 0.07 0.18 5.21 31.18 0.16 0.34 16 8 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 9 O -0.58 -3.87 13.67 -148.98 -2.04 -5.90 16 10 C -0.16 -0.82 6.85 31.18 0.21 -0.61 16 11 C 0.48 1.24 7.74 87.66 0.68 1.92 16 12 O -0.57 -8.27 15.09 -3.03 -0.05 -8.31 16 13 C 0.09 -0.38 5.03 85.63 0.43 0.06 16 14 N -0.47 -2.20 2.27 -519.99 -1.18 -3.38 16 15 C 0.07 0.38 9.89 83.00 0.82 1.20 16 16 C -0.18 -1.62 5.61 -18.63 -0.10 -1.73 16 17 C -0.06 -0.29 3.05 71.24 0.22 -0.07 16 18 O -0.57 -5.12 12.86 -148.98 -1.92 -7.04 16 19 Si 0.78 -0.31 30.80 68.60 2.11 1.80 16 20 C -0.12 -1.42 6.35 -20.20 -0.13 -1.55 16 21 C -0.09 -0.92 10.05 22.23 0.22 -0.70 16 22 C -0.15 -1.15 9.97 22.03 0.22 -0.93 16 23 C -0.11 -0.65 10.01 22.29 0.22 -0.43 16 24 C -0.13 -0.95 10.00 22.37 0.22 -0.73 16 25 C 0.09 0.88 6.80 39.03 0.27 1.15 16 26 H 0.07 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H 0.09 -1.39 8.07 -2.39 -0.02 -1.41 16 28 H 0.10 -1.67 6.44 -2.39 -0.02 -1.68 16 29 H 0.11 -0.65 8.07 -2.39 -0.02 -0.67 16 30 H 0.05 0.34 7.16 -2.38 -0.02 0.33 16 31 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.08 0.26 8.10 -2.39 -0.02 0.24 16 33 H 0.39 -0.33 9.12 -74.06 -0.68 -1.01 16 34 H 0.06 0.77 7.64 -2.39 -0.02 0.75 16 35 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.16 -2.00 7.38 -2.39 -0.02 -2.02 16 37 H 0.14 -1.36 8.11 -2.39 -0.02 -1.38 16 38 H 0.19 -0.17 6.31 -2.91 -0.02 -0.19 16 39 H 0.08 0.17 7.96 -2.38 -0.02 0.15 16 40 H 0.39 -0.02 8.74 -74.05 -0.65 -0.66 16 41 H -0.29 -1.58 7.04 99.48 0.70 -0.88 16 42 H -0.28 -0.95 7.11 99.48 0.71 -0.24 16 43 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 0.40 8.06 -2.91 -0.02 0.37 16 45 H 0.15 0.10 8.06 -2.91 -0.02 0.08 16 46 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 Total: 0.00 -32.46 381.22 -0.39 -32.85 By element: Atomic # 1 Polarization: -8.60 SS G_CDS: -0.29 Total: -8.88 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.40 Total: -0.92 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -3.61 Total: -3.60 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -4.00 Total: -21.25 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: 2.11 Total: 1.80 kcal Total: -32.46 -0.39 -32.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12312124_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.606 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds