Wall clock time and date at job start Tue Mar 9 2021 12:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99625 * 2 1 4 4 H 1.08999 * 112.85136 * 18.80551 * 3 2 1 5 5 C 1.53782 * 113.61295 * 150.00161 * 3 2 1 6 6 C 1.53784 * 87.07940 * 89.19784 * 5 3 2 7 7 H 1.08995 * 113.61820 * 270.79554 * 6 5 3 8 8 N 1.46505 * 113.61249 * 139.97949 * 6 5 3 9 9 C 1.34777 * 120.00115 * 155.00034 * 8 6 5 10 10 O 1.21282 * 119.99620 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00369 * 180.02562 * 9 8 6 12 12 C 1.52997 * 109.47466 * 180.02562 * 11 9 8 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 9 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38713 * 120.05537 * 179.71958 * 14 13 12 16 16 C 1.38163 * 119.94209 * 179.67539 * 15 14 13 17 17 C 1.50703 * 119.97487 * 180.32298 * 16 15 14 18 18 O 1.42898 * 109.46854 * 300.30240 * 17 16 15 19 19 Si 1.86301 * 109.47322 * 180.30256 * 17 16 15 20 20 C 1.38248 * 120.05642 * 0.63026 * 16 15 14 21 21 C 1.38290 * 120.11056 * 359.67083 * 20 16 15 22 22 C 1.38124 * 120.05419 * 0.02562 * 21 20 16 23 23 C 1.53780 * 87.08078 * 25.43375 * 6 5 3 24 24 H 1.08997 * 109.47304 * 60.00178 * 1 2 3 25 25 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47165 * 299.99594 * 1 2 3 27 27 H 1.08994 * 113.61586 * 334.65389 * 5 3 2 28 28 H 1.09000 * 113.69089 * 203.75487 * 5 3 2 29 29 H 0.97003 * 120.00244 * 335.00064 * 8 6 5 30 30 H 1.09002 * 109.47120 * 59.99760 * 11 9 8 31 31 H 1.08998 * 109.46862 * 300.00562 * 11 9 8 32 32 H 1.09002 * 109.47153 * 59.99773 * 12 11 9 33 33 H 1.09001 * 109.46832 * 299.99964 * 12 11 9 34 34 H 1.07996 * 120.02798 * 0.02562 * 15 14 13 35 35 H 1.09003 * 109.46652 * 60.30380 * 17 16 15 36 36 H 0.96696 * 114.00448 * 299.99633 * 18 17 16 37 37 H 1.48493 * 110.00194 * 180.02562 * 19 17 16 38 38 H 1.48498 * 110.00043 * 301.32030 * 19 17 16 39 39 H 1.07997 * 119.94834 * 179.69938 * 20 16 15 40 40 H 1.08001 * 119.97430 * 180.02562 * 21 20 16 41 41 H 1.08006 * 120.02821 * 179.97438 * 22 21 20 42 42 H 1.09005 * 113.61632 * 89.11370 * 23 6 5 43 43 H 1.08997 * 113.61177 * 220.01145 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 0.3238 5 6 3.3755 1.3720 0.7045 6 6 4.0062 1.0353 -0.6571 7 1 4.1106 -0.0345 -0.8374 8 7 5.2358 1.7817 -0.9348 9 6 6.1520 1.2785 -1.7857 10 8 5.9586 0.2075 -2.3210 11 6 7.4171 2.0459 -2.0710 12 6 8.2780 1.2599 -3.0619 13 8 9.4780 1.9874 -3.3319 14 6 10.3595 1.4235 -4.1990 15 6 11.5421 2.0777 -4.5111 16 6 12.4397 1.4992 -5.3877 17 6 13.7282 2.2060 -5.7216 18 8 13.4365 3.4770 -6.3060 19 14 14.7061 1.1774 -6.9284 20 6 12.1541 0.2753 -5.9638 21 6 10.9729 -0.3761 -5.6591 22 6 10.0751 0.1952 -4.7785 23 6 2.7530 1.6511 -1.3014 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.5176 0.5950 1.4555 28 1 3.6316 2.3663 1.0704 29 1 5.3907 2.6381 -0.5064 30 1 7.9710 2.1912 -1.1434 31 1 7.1648 3.0160 -2.4991 32 1 7.7240 1.1150 -3.9893 33 1 8.5303 0.2896 -2.6340 34 1 11.7637 3.0359 -4.0648 35 1 14.3102 2.3495 -4.8113 36 1 12.9196 3.4257 -7.1216 37 1 15.9794 1.8632 -7.2652 38 1 14.9884 -0.1587 -6.3449 39 1 12.8547 -0.1730 -6.6525 40 1 10.7521 -1.3322 -6.1101 41 1 9.1525 -0.3137 -4.5412 42 1 2.8377 2.7224 -1.4845 43 1 2.3926 1.0996 -2.1696 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_4549614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:02 Heat of formation + Delta-G solvation = -94.082243 kcal Electronic energy + Delta-G solvation = -24222.599415 eV Core-core repulsion = 20428.962889 eV Total energy + Delta-G solvation = -3793.636527 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51498 -41.15526 -39.99891 -39.10324 -37.30322 -37.16390 -34.33167 -33.10873 -32.46560 -30.83664 -27.74231 -27.09766 -26.76572 -26.13977 -24.42255 -23.68185 -22.11868 -21.51806 -20.80878 -19.36068 -18.17936 -18.15138 -17.64899 -17.51440 -17.14287 -17.00250 -16.78700 -16.33242 -16.17830 -16.02279 -15.83854 -15.41016 -14.94464 -14.79492 -14.68160 -14.40760 -14.22372 -14.08223 -13.50795 -13.36635 -13.27315 -13.10978 -12.93263 -12.84658 -12.44637 -12.36945 -12.02980 -12.00034 -11.83728 -11.63802 -11.45782 -11.05164 -10.55019 -10.50980 -10.11214 -9.93883 -9.29154 -4.98043 0.18109 0.37273 1.30105 1.47627 1.65064 1.70113 1.97152 2.49244 2.65165 2.67841 3.45239 3.49695 3.54937 3.57097 3.65249 3.78237 3.83174 3.87707 3.95468 4.06704 4.07846 4.21678 4.25843 4.30363 4.38543 4.48983 4.50151 4.52697 4.60157 4.65381 4.67027 4.73654 4.78898 4.82406 4.94324 4.96318 4.99673 5.02375 5.24236 5.36343 5.42157 5.46061 5.68539 6.24003 6.30590 6.45574 6.75837 7.14645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.059 3.941 4 H 0.103 0.897 5 C -0.135 4.135 6 C 0.121 3.879 7 H 0.084 0.916 8 N -0.704 5.704 9 C 0.518 3.482 10 O -0.587 6.587 11 C -0.132 4.132 12 C 0.074 3.926 13 O -0.324 6.324 14 C 0.116 3.884 15 C -0.141 4.141 16 C -0.084 4.084 17 C -0.078 4.078 18 O -0.555 6.555 19 Si 0.786 3.214 20 C -0.157 4.157 21 C -0.075 4.075 22 C -0.212 4.212 23 C -0.167 4.167 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.421 0.579 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.396 0.604 37 H -0.298 1.298 38 H -0.285 1.285 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 3.385 0.652 5.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.001 3.999 4 H 0.120 0.880 5 C -0.173 4.173 6 C 0.015 3.985 7 H 0.103 0.897 8 N -0.356 5.356 9 C 0.306 3.694 10 O -0.467 6.467 11 C -0.171 4.171 12 C -0.001 4.001 13 O -0.238 6.238 14 C 0.071 3.929 15 C -0.159 4.159 16 C -0.085 4.085 17 C -0.187 4.187 18 O -0.363 6.363 19 Si 0.691 3.309 20 C -0.175 4.175 21 C -0.093 4.093 22 C -0.231 4.231 23 C -0.206 4.206 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.259 0.741 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.246 0.754 37 H -0.226 1.226 38 H -0.212 1.212 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.153 0.847 42 H 0.133 0.867 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.066 2.432 0.763 3.987 hybrid contribution -0.480 0.283 0.827 0.997 sum -3.546 2.716 1.590 4.741 Atomic orbital electron populations 1.22976 0.79335 1.03697 1.01040 1.87867 1.21546 1.27720 1.94685 1.23025 0.95006 0.85499 0.96409 0.87952 1.23628 0.93317 1.04580 0.95768 1.22426 0.82470 0.96579 0.96986 0.89741 1.45852 1.19248 1.24620 1.45839 1.20728 0.85129 0.85330 0.78230 1.90739 1.79470 1.24362 1.52170 1.21439 0.92569 1.00724 1.02373 1.22432 0.83352 0.94896 0.99463 1.85950 1.30035 1.47793 1.59992 1.19156 0.90292 0.92615 0.90830 1.20310 0.92751 1.01380 1.01497 1.20253 0.96415 0.95320 0.96468 1.25300 0.97758 0.91005 1.04646 1.86464 1.77232 1.27266 1.45325 0.93525 0.78057 0.74503 0.84772 1.21178 0.98633 0.95388 1.02259 1.21250 0.92579 1.00130 0.95340 1.21549 1.02764 0.96361 1.02399 1.23990 0.95847 1.02671 0.98047 0.93242 0.89129 0.92481 0.90561 0.85311 0.74085 0.85509 0.85317 0.91640 0.91928 0.85420 0.87547 0.75428 1.22619 1.21169 0.83424 0.82966 0.84718 0.86698 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.46 10.64 -148.98 -1.58 -3.04 16 3 C 0.06 -0.12 4.37 31.12 0.14 0.01 16 4 H 0.10 -0.65 7.87 -2.39 -0.02 -0.67 16 5 C -0.13 0.57 7.66 31.12 0.24 0.81 16 6 C 0.12 0.05 4.18 45.52 0.19 0.24 16 7 H 0.08 0.69 7.46 -2.39 -0.02 0.67 16 8 N -0.70 2.22 5.35 -440.03 -2.36 -0.14 16 9 C 0.52 1.16 7.83 87.66 0.69 1.85 16 10 O -0.59 -7.16 15.58 -3.04 -0.05 -7.21 16 11 C -0.13 0.41 6.07 29.85 0.18 0.59 16 12 C 0.07 0.18 4.03 71.98 0.29 0.47 16 13 O -0.32 -1.74 10.14 -92.43 -0.94 -2.67 16 14 C 0.12 0.71 6.69 22.51 0.15 0.86 16 15 C -0.14 -0.79 9.55 22.37 0.21 -0.57 16 16 C -0.08 -0.22 5.39 -19.88 -0.11 -0.32 16 17 C -0.08 -0.08 2.82 71.24 0.20 0.12 16 18 O -0.55 -0.91 12.76 -148.98 -1.90 -2.81 16 19 Si 0.79 -1.29 29.79 68.60 2.04 0.75 16 20 C -0.16 -0.05 8.67 22.28 0.19 0.14 16 21 C -0.08 -0.07 10.04 22.25 0.22 0.15 16 22 C -0.21 -0.85 9.04 22.37 0.20 -0.65 16 23 C -0.17 0.24 7.71 31.12 0.24 0.48 16 24 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.13 -1.34 8.12 -2.39 -0.02 -1.36 16 29 H 0.42 -4.46 8.73 -92.71 -0.81 -5.27 16 30 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.07 0.24 7.62 -2.39 -0.02 0.22 16 33 H 0.06 0.26 7.62 -2.39 -0.02 0.24 16 34 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.11 0.24 7.96 -2.39 -0.02 0.23 16 36 H 0.40 -2.57 8.70 -74.06 -0.64 -3.22 16 37 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 38 H -0.28 -0.81 7.11 99.48 0.71 -0.11 16 39 H 0.15 -0.64 4.87 -2.91 -0.01 -0.65 16 40 H 0.15 -0.60 8.06 -2.91 -0.02 -0.62 16 41 H 0.14 0.38 6.30 -2.91 -0.02 0.37 16 42 H 0.11 -0.68 8.14 -2.38 -0.02 -0.70 16 43 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 Total: 0.00 -22.49 359.86 -0.90 -23.39 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: -0.39 Total: -13.64 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 4.27 Total: 5.37 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: -2.36 Total: -0.14 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -4.47 Total: -15.73 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: 2.04 Total: 0.75 kcal Total: -22.49 -0.90 -23.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_4549614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.697 kcal (2) G-P(sol) polarization free energy of solvation -22.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds