Wall clock time and date at job start Tue Mar 9 2021 12:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42912 * 113.99923 * 2 1 4 4 H 1.08999 * 112.90229 * 341.25149 * 3 2 1 5 5 C 1.53781 * 113.61510 * 112.50457 * 3 2 1 6 6 C 1.53771 * 87.08224 * 139.98217 * 5 3 2 7 7 H 1.08993 * 113.69204 * 220.00981 * 6 5 3 8 8 N 1.46497 * 113.61706 * 89.11377 * 6 5 3 9 9 C 1.34773 * 120.00371 * 107.50155 * 8 6 5 10 10 O 1.21702 * 119.99724 * 0.02562 * 9 8 6 11 11 C 1.46652 * 120.00630 * 180.02562 * 9 8 6 12 12 C 1.36544 * 125.99071 * 180.02562 * 11 9 8 13 13 C 1.50702 * 126.64703 * 359.97438 * 12 11 9 14 14 C 1.40370 * 106.70810 * 179.97438 * 12 11 9 15 15 C 1.35135 * 107.11413 * 0.02562 * 14 12 11 16 16 C 1.50693 * 125.61399 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47523 * 89.99552 * 16 15 14 18 18 C 1.35892 * 117.00484 * 179.97438 * 17 16 15 19 19 C 1.38732 * 120.05920 * 180.02562 * 18 17 16 20 20 C 1.38149 * 119.94758 * 179.97438 * 19 18 17 21 21 C 1.38269 * 120.05054 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.93900 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.47341 * 300.00123 * 22 21 20 24 24 Si 1.86300 * 109.46849 * 180.02562 * 22 21 20 25 25 C 1.38264 * 120.11486 * 0.27666 * 21 20 19 26 26 C 1.38143 * 120.05501 * 359.44957 * 25 21 20 27 27 O 1.33929 * 108.76530 * 0.26288 * 15 14 12 28 28 C 1.53774 * 113.61336 * 209.99959 * 3 2 1 29 29 H 1.09002 * 109.47519 * 60.00045 * 1 2 3 30 30 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47031 * 299.99930 * 1 2 3 32 32 H 1.09004 * 113.61318 * 25.42737 * 5 3 2 33 33 H 1.09006 * 113.61064 * 254.53166 * 5 3 2 34 34 H 0.97004 * 119.99879 * 287.50561 * 8 6 5 35 35 H 1.08996 * 109.46824 * 270.00490 * 13 12 11 36 36 H 1.09001 * 109.46590 * 29.99856 * 13 12 11 37 37 H 1.09001 * 109.47177 * 149.99883 * 13 12 11 38 38 H 1.07997 * 126.44276 * 179.97438 * 14 12 11 39 39 H 1.09008 * 109.47376 * 329.99797 * 16 15 14 40 40 H 1.08998 * 109.46915 * 209.99722 * 16 15 14 41 41 H 1.08000 * 120.02660 * 359.96129 * 19 18 17 42 42 H 1.07992 * 119.97601 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.46989 * 60.00454 * 22 21 20 44 44 H 0.96693 * 114.00306 * 299.99773 * 23 22 21 45 45 H 1.48506 * 110.00048 * 58.68772 * 24 22 21 46 46 H 1.48502 * 109.99996 * 180.02562 * 24 22 21 47 47 H 1.08003 * 119.97236 * 179.73093 * 25 21 20 48 48 H 1.08000 * 120.02735 * 180.28019 * 26 25 21 49 49 H 1.09008 * 113.61184 * 105.46937 * 28 3 2 50 50 H 1.09005 * 113.69670 * 334.57811 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3141 2.0798 -0.3227 5 6 2.7534 1.6490 1.3017 6 6 3.8226 2.3183 0.4222 7 1 4.8429 2.1410 0.7620 8 7 3.5531 3.7310 0.1436 9 6 4.2932 4.6881 0.7373 10 8 5.1858 4.3787 1.5046 11 6 4.0231 6.1024 0.4589 12 6 4.6938 7.1670 0.9893 13 6 5.8418 7.1118 1.9641 14 6 4.1068 8.3227 0.4508 15 6 3.1157 7.9181 -0.3739 16 6 2.2131 8.8237 -1.1714 17 8 2.7982 9.0726 -2.4512 18 6 2.1060 9.8768 -3.3002 19 6 2.6153 10.1603 -4.5591 20 6 1.9095 10.9777 -5.4206 21 6 0.6966 11.5137 -5.0287 22 6 -0.0709 12.4055 -5.9702 23 8 0.7226 13.5480 -6.2974 24 14 -1.6496 12.9606 -5.1513 25 6 0.1899 11.2378 -3.7722 26 6 0.8891 10.4164 -2.9092 27 8 3.0645 6.5798 -0.3617 28 6 3.3754 1.3720 -0.7045 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1166 0.7741 1.8410 33 1 2.2139 2.3478 1.9412 34 1 2.8419 3.9776 -0.4682 35 1 5.4544 7.1263 2.9828 36 1 6.4101 6.1955 1.8045 37 1 6.4911 7.9736 1.8099 38 1 4.3928 9.3434 0.6574 39 1 2.0845 9.7673 -0.6410 40 1 1.2425 8.3453 -1.3025 41 1 3.5629 9.7424 -4.8654 42 1 2.3057 11.1990 -6.4005 43 1 -0.3076 11.8547 -6.8805 44 1 0.9710 14.0862 -5.5335 45 1 -1.3411 13.6856 -3.8925 46 1 -2.4161 13.8404 -6.0698 47 1 -0.7556 11.6611 -3.4668 48 1 0.4907 10.1975 -1.9295 49 1 3.3382 1.8472 -1.6848 50 1 3.9098 0.4220 -0.7147 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:11 Heat of formation + Delta-G solvation = -67.786444 kcal Electronic energy + Delta-G solvation = -32793.509853 eV Core-core repulsion = 28142.115365 eV Total energy + Delta-G solvation = -4651.394488 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.96527 -41.40981 -41.25375 -39.80251 -39.25440 -37.40777 -37.30863 -35.38234 -34.16933 -33.12467 -32.04097 -31.51489 -28.94869 -28.49611 -27.64933 -26.80963 -26.23161 -25.20909 -24.10268 -23.06232 -22.62987 -22.25538 -20.97744 -20.61310 -19.47942 -19.40087 -18.44896 -17.97349 -17.56318 -17.37066 -17.09628 -16.84224 -16.74810 -16.56726 -16.22041 -16.14548 -15.95558 -15.68140 -15.59418 -15.34181 -14.80775 -14.62958 -14.39194 -14.28963 -14.18844 -14.09541 -13.83137 -13.69301 -13.60508 -13.53523 -13.52021 -13.41048 -13.36629 -12.84349 -12.29583 -12.21863 -12.10458 -12.07121 -12.01123 -11.62518 -11.59746 -11.38347 -10.83093 -10.59219 -10.50929 -10.37119 -10.02727 -9.74520 -9.23487 -4.91029 -0.29961 0.28015 0.31894 0.94294 1.30828 1.33908 1.60974 1.87910 1.90062 1.98463 2.35886 2.65864 2.84274 3.26808 3.37138 3.44623 3.47651 3.61027 3.62173 3.71968 3.76963 3.80664 3.89783 3.94836 4.02103 4.08140 4.27084 4.31946 4.34515 4.42725 4.46077 4.46777 4.53168 4.56922 4.57108 4.67881 4.71151 4.71190 4.71951 4.80622 4.85908 4.90701 4.94822 4.95037 4.98596 5.06046 5.16723 5.26238 5.26665 5.37590 5.50753 5.64725 5.70240 6.23264 6.25799 6.29066 6.51037 6.84765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.060 3.940 4 H 0.102 0.898 5 C -0.164 4.164 6 C 0.118 3.882 7 H 0.102 0.898 8 N -0.692 5.692 9 C 0.606 3.394 10 O -0.542 6.542 11 C -0.094 4.094 12 C -0.093 4.093 13 C -0.096 4.096 14 C -0.188 4.188 15 C 0.013 3.987 16 C 0.135 3.865 17 O -0.327 6.327 18 C 0.125 3.875 19 C -0.163 4.163 20 C -0.061 4.061 21 C -0.158 4.158 22 C -0.080 4.080 23 O -0.551 6.551 24 Si 0.767 3.233 25 C -0.077 4.077 26 C -0.201 4.201 27 O -0.159 6.159 28 C -0.134 4.134 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.183 0.817 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.386 0.614 45 H -0.280 1.280 46 H -0.308 1.308 47 H 0.150 0.850 48 H 0.160 0.840 49 H 0.091 0.909 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 0.957 0.450 6.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.003 3.997 4 H 0.120 0.880 5 C -0.203 4.203 6 C 0.013 3.987 7 H 0.120 0.880 8 N -0.343 5.343 9 C 0.394 3.606 10 O -0.422 6.422 11 C -0.146 4.146 12 C -0.096 4.096 13 C -0.152 4.152 14 C -0.207 4.207 15 C -0.039 4.039 16 C 0.061 3.939 17 O -0.241 6.241 18 C 0.081 3.919 19 C -0.181 4.181 20 C -0.079 4.079 21 C -0.158 4.158 22 C -0.189 4.189 23 O -0.359 6.359 24 Si 0.673 3.327 25 C -0.094 4.094 26 C -0.220 4.220 27 O -0.056 6.056 28 C -0.172 4.172 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.200 0.800 39 H 0.147 0.853 40 H 0.124 0.876 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.140 0.860 44 H 0.235 0.765 45 H -0.206 1.206 46 H -0.237 1.237 47 H 0.167 0.833 48 H 0.178 0.822 49 H 0.110 0.890 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.769 0.670 0.491 5.829 hybrid contribution 0.590 1.094 -0.038 1.244 sum -5.179 1.764 0.453 5.490 Atomic orbital electron populations 1.22960 0.79838 1.03734 1.00779 1.87925 1.21203 1.27952 1.94637 1.23916 0.94212 0.85487 0.96129 0.88002 1.23954 0.97573 1.01037 0.97726 1.21682 1.00199 0.78963 0.97869 0.87990 1.45499 1.36463 1.05330 1.47014 1.16582 0.81513 0.82381 0.80138 1.90866 1.32719 1.81405 1.37197 1.21768 0.96136 0.94334 1.02411 1.20978 0.98505 0.91436 0.98697 1.20463 0.94246 1.03845 0.96666 1.21893 0.97147 1.00961 1.00680 1.22414 1.00482 0.80454 1.00541 1.21263 0.93891 0.97515 0.81185 1.86106 1.47766 1.64419 1.25843 1.19088 0.91567 0.91214 0.90070 1.20630 1.02314 1.02766 0.92427 1.20921 0.93619 0.94020 0.99339 1.20271 0.97305 1.02126 0.96131 1.25191 1.02168 0.87672 1.03848 1.86568 1.71825 1.39360 1.38159 0.94176 0.76714 0.86087 0.75765 1.21048 0.99456 0.96557 0.92377 1.21481 0.95214 1.02429 1.02830 1.83954 1.46429 1.21778 1.53410 1.23575 0.95392 1.00065 0.98191 0.92826 0.88978 0.93444 0.88286 0.90996 0.74761 0.90051 0.91136 0.89473 0.79988 0.85322 0.87568 0.85092 0.84854 0.86025 0.76518 1.20593 1.23703 0.83286 0.82214 0.89043 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.06 10.71 -148.98 -1.60 -2.65 16 3 C 0.06 -0.08 4.19 31.12 0.13 0.05 16 4 H 0.10 -0.49 7.87 -2.39 -0.02 -0.51 16 5 C -0.16 -0.02 7.71 31.12 0.24 0.22 16 6 C 0.12 0.06 4.32 45.52 0.20 0.26 16 7 H 0.10 0.37 7.46 -2.39 -0.02 0.35 16 8 N -0.69 -0.55 5.26 -444.05 -2.33 -2.89 16 9 C 0.61 3.99 7.79 86.44 0.67 4.67 16 10 O -0.54 -6.73 14.34 -4.36 -0.06 -6.79 16 11 C -0.09 -0.50 7.13 24.07 0.17 -0.33 16 12 C -0.09 -0.39 6.20 -19.74 -0.12 -0.52 16 13 C -0.10 -0.28 9.82 71.24 0.70 0.42 16 14 C -0.19 -0.01 10.73 22.07 0.24 0.23 16 15 C 0.01 -0.01 6.94 24.97 0.17 0.17 16 16 C 0.14 -0.78 5.27 71.23 0.38 -0.41 16 17 O -0.33 -0.09 10.12 -92.34 -0.93 -1.02 16 18 C 0.13 -0.06 6.69 22.51 0.15 0.09 16 19 C -0.16 -0.16 9.99 22.37 0.22 0.06 16 20 C -0.06 -0.01 9.60 22.26 0.21 0.21 16 21 C -0.16 0.28 5.39 -19.85 -0.11 0.17 16 22 C -0.08 0.16 2.82 71.24 0.20 0.36 16 23 O -0.55 -0.88 12.76 -148.98 -1.90 -2.78 16 24 Si 0.77 -2.87 29.78 68.60 2.04 -0.83 16 25 C -0.08 0.34 8.66 22.25 0.19 0.53 16 26 C -0.20 0.94 9.04 22.37 0.20 1.14 16 27 O -0.16 -0.39 10.40 -5.05 -0.05 -0.45 16 28 C -0.13 0.29 7.66 31.12 0.24 0.53 16 29 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.42 -1.42 8.46 -92.71 -0.78 -2.20 16 35 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.07 0.49 6.44 -2.39 -0.02 0.48 16 37 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.18 -0.92 8.06 -2.91 -0.02 -0.94 16 39 H 0.13 -1.45 7.66 -2.38 -0.02 -1.47 16 40 H 0.11 -1.02 7.66 -2.39 -0.02 -1.04 16 41 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 42 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 43 H 0.12 -0.38 7.96 -2.39 -0.02 -0.40 16 44 H 0.39 -1.54 8.70 -74.06 -0.64 -2.18 16 45 H -0.28 0.17 7.11 99.48 0.71 0.87 16 46 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 47 H 0.15 -1.30 4.87 -2.91 -0.01 -1.31 16 48 H 0.16 -1.72 6.30 -2.91 -0.02 -1.74 16 49 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 50 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 Total: 0.00 -20.66 419.21 0.08 -20.58 By element: Atomic # 1 Polarization: -11.80 SS G_CDS: -0.40 Total: -12.20 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.32 Total: 9.03 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -2.33 Total: -2.89 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -4.55 Total: -13.70 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.04 Total: -0.83 kcal Total: -20.66 0.08 -20.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.203 kcal (2) G-P(sol) polarization free energy of solvation -20.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds