Wall clock time and date at job start Tue Mar 9 2021 12:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00070 * 2 1 4 4 H 1.09001 * 112.84837 * 341.19387 * 3 2 1 5 5 C 1.53784 * 113.69077 * 112.46166 * 3 2 1 6 6 C 1.53785 * 87.08125 * 139.99340 * 5 3 2 7 7 H 1.08996 * 113.69317 * 220.01438 * 6 5 3 8 8 N 1.46498 * 113.61226 * 89.11438 * 6 5 3 9 9 C 1.34775 * 119.99714 * 107.50658 * 8 6 5 10 10 O 1.21282 * 120.00005 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99929 * 180.02562 * 9 8 6 12 12 O 1.42905 * 109.47219 * 180.02562 * 11 9 8 13 13 C 1.35904 * 117.00216 * 180.02562 * 12 11 9 14 14 C 1.38710 * 120.05675 * 179.97438 * 13 12 11 15 15 C 1.38159 * 119.94279 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.97168 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.47171 * 65.00069 * 16 15 14 18 18 Si 1.86303 * 109.47044 * 184.99812 * 16 15 14 19 19 C 1.38245 * 120.05607 * 0.27343 * 15 14 13 20 20 C 1.38289 * 120.11287 * 359.44887 * 19 15 14 21 21 C 1.38124 * 120.05188 * 0.55082 * 20 19 15 22 22 C 1.53785 * 87.08179 * 334.56735 * 6 5 3 23 23 H 1.08991 * 109.47224 * 300.00034 * 1 2 3 24 24 H 1.08999 * 109.46755 * 60.00194 * 1 2 3 25 25 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 26 26 H 1.08995 * 113.61150 * 25.44837 * 5 3 2 27 27 H 1.08992 * 113.61522 * 254.53981 * 5 3 2 28 28 H 0.97001 * 120.00304 * 287.50583 * 8 6 5 29 29 H 1.09001 * 109.47399 * 59.99695 * 11 9 8 30 30 H 1.09004 * 109.46949 * 299.99302 * 11 9 8 31 31 H 1.08001 * 120.02432 * 359.97438 * 14 13 12 32 32 H 1.09002 * 109.47152 * 304.99853 * 16 15 14 33 33 H 0.96701 * 113.99881 * 180.02562 * 17 16 15 34 34 H 1.48493 * 110.00286 * 299.99847 * 18 16 15 35 35 H 1.48505 * 109.99793 * 61.32243 * 18 16 15 36 36 H 1.08003 * 119.94486 * 179.71028 * 19 15 14 37 37 H 1.07998 * 119.97112 * 180.25365 * 20 19 15 38 38 H 1.07996 * 120.02628 * 179.69825 * 21 20 19 39 39 H 1.09005 * 113.61416 * 139.97870 * 22 6 5 40 40 H 1.08997 * 113.61455 * 270.88531 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7531 1.6511 1.3014 6 6 3.8220 2.3199 0.4211 7 1 4.8425 2.1438 0.7612 8 7 3.5516 3.7322 0.1406 9 6 4.2911 4.6905 0.7332 10 8 5.1801 4.3837 1.4990 11 6 4.0126 6.1432 0.4451 12 8 4.9223 6.9588 1.1863 13 6 4.8048 8.3047 1.0392 14 6 5.6552 9.1559 1.7295 15 6 5.5340 10.5238 1.5778 16 6 6.4571 11.4491 2.3280 17 8 7.7973 11.2592 1.8700 18 14 5.9432 13.2149 2.0296 19 6 4.5627 11.0445 0.7433 20 6 3.7174 10.1979 0.0495 21 6 3.8345 8.8297 0.1978 22 6 3.3756 1.3719 -0.7045 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1168 0.7772 1.8417 27 1 2.2132 2.3503 1.9398 28 1 2.8403 3.9775 -0.4716 29 1 2.9897 6.3819 0.7367 30 1 4.1404 6.3333 -0.6206 31 1 6.4113 8.7496 2.3850 32 1 6.4031 11.2302 3.3944 33 1 8.4472 11.8236 2.3107 34 1 6.0126 13.5259 0.5793 35 1 4.5625 13.4336 2.5307 36 1 4.4665 12.1142 0.6296 37 1 2.9621 10.6071 -0.6050 38 1 3.1710 8.1691 -0.3405 39 1 3.3382 1.8458 -1.6854 40 1 3.9095 0.4217 -0.7124 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:31 Heat of formation + Delta-G solvation = -83.637102 kcal Electronic energy + Delta-G solvation = -22740.237610 eV Core-core repulsion = 19102.591638 eV Total energy + Delta-G solvation = -3637.645973 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77898 -41.15968 -39.93094 -38.89860 -37.40997 -37.24255 -34.25532 -32.70458 -31.78715 -29.48185 -27.74122 -26.86443 -26.78875 -25.06788 -23.83285 -22.86435 -21.70635 -20.70720 -19.30430 -18.48970 -18.42243 -17.89277 -17.62199 -17.50092 -17.03760 -16.78899 -16.46548 -16.11721 -15.88933 -15.59649 -15.44684 -14.90986 -14.64071 -14.36828 -14.18905 -13.88735 -13.83289 -13.62154 -13.52928 -13.37163 -13.25672 -12.46079 -12.28604 -12.22145 -12.16786 -12.00258 -11.86583 -11.58140 -11.13654 -10.50384 -10.40243 -10.27617 -10.01792 -9.44010 -4.93080 0.05889 0.21583 1.23563 1.32056 1.37988 1.65503 1.95786 2.45027 2.50140 2.84867 3.36739 3.38680 3.41965 3.48659 3.69697 3.76953 3.79216 3.85055 3.91037 3.94569 4.01088 4.14051 4.17725 4.34992 4.37937 4.46253 4.53387 4.55035 4.70119 4.70848 4.82490 4.83715 4.88089 4.90663 4.95434 5.06709 5.17844 5.28541 5.36695 5.51933 6.14552 6.25339 6.35402 6.87094 7.01929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.063 3.937 4 H 0.111 0.889 5 C -0.168 4.168 6 C 0.119 3.881 7 H 0.089 0.911 8 N -0.692 5.692 9 C 0.516 3.484 10 O -0.570 6.570 11 C 0.037 3.963 12 O -0.319 6.319 13 C 0.121 3.879 14 C -0.145 4.145 15 C -0.052 4.052 16 C -0.091 4.091 17 O -0.566 6.566 18 Si 0.788 3.212 19 C -0.181 4.181 20 C -0.072 4.072 21 C -0.201 4.201 22 C -0.133 4.133 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.422 0.578 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.404 0.596 34 H -0.292 1.292 35 H -0.285 1.285 36 H 0.122 0.878 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.099 0.901 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 3.236 -2.844 7.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.005 3.995 4 H 0.128 0.872 5 C -0.207 4.207 6 C 0.013 3.987 7 H 0.107 0.893 8 N -0.346 5.346 9 C 0.303 3.697 10 O -0.448 6.448 11 C -0.041 4.041 12 O -0.232 6.232 13 C 0.076 3.924 14 C -0.164 4.164 15 C -0.052 4.052 16 C -0.200 4.200 17 O -0.376 6.376 18 Si 0.693 3.307 19 C -0.198 4.198 20 C -0.089 4.089 21 C -0.219 4.219 22 C -0.171 4.171 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.107 0.893 33 H 0.255 0.745 34 H -0.220 1.220 35 H -0.212 1.212 36 H 0.140 0.860 37 H 0.177 0.823 38 H 0.186 0.814 39 H 0.117 0.883 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.553 2.822 -2.942 6.889 hybrid contribution -0.571 -0.520 -0.100 0.779 sum -6.124 2.302 -3.041 7.215 Atomic orbital electron populations 1.22956 0.79796 1.03668 1.00865 1.87931 1.21247 1.28223 1.94617 1.23944 0.94261 0.85568 0.95751 0.87163 1.23967 0.97859 1.00927 0.97989 1.21577 0.99547 0.79787 0.97801 0.89294 1.45319 1.37036 1.04557 1.47668 1.20539 0.81256 0.88024 0.79895 1.90775 1.33212 1.83833 1.36948 1.22764 0.95556 0.86560 0.99214 1.86129 1.56532 1.14538 1.65987 1.19165 0.95480 0.82030 0.95769 1.20354 1.00840 0.92024 1.03208 1.19488 0.95820 0.93132 0.96778 1.25054 0.85303 1.09640 0.99976 1.86452 1.16179 1.68029 1.66893 0.94204 0.81134 0.76140 0.79261 1.21053 0.98901 0.99694 1.00173 1.21258 0.97880 0.92579 0.97221 1.21623 1.00839 0.97107 1.02341 1.23557 0.95279 0.99822 0.98405 0.93459 0.92549 0.89227 0.89115 0.90885 0.73942 0.85329 0.85451 0.85829 0.89267 0.74501 1.21959 1.21198 0.86028 0.82287 0.81425 0.88283 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.40 -0.72 10.72 -148.98 -1.60 -2.32 16 3 C 0.06 -0.20 4.18 31.12 0.13 -0.07 16 4 H 0.11 -0.91 7.87 -2.39 -0.02 -0.93 16 5 C -0.17 0.07 7.71 31.12 0.24 0.31 16 6 C 0.12 -0.07 4.32 45.52 0.20 0.13 16 7 H 0.09 0.44 7.46 -2.39 -0.02 0.42 16 8 N -0.69 2.70 5.26 -440.04 -2.32 0.38 16 9 C 0.52 1.77 7.91 87.66 0.69 2.46 16 10 O -0.57 -8.92 16.10 16.00 0.26 -8.67 16 11 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 12 O -0.32 -2.58 9.67 -73.43 -0.71 -3.29 16 13 C 0.12 0.81 6.69 22.51 0.15 0.96 16 14 C -0.15 -1.38 9.62 22.36 0.22 -1.16 16 15 C -0.05 -0.38 5.38 -19.88 -0.11 -0.49 16 16 C -0.09 -0.19 2.79 71.24 0.20 0.01 16 17 O -0.57 -1.60 12.81 -148.98 -1.91 -3.51 16 18 Si 0.79 -1.13 29.84 68.60 2.05 0.92 16 19 C -0.18 -0.97 8.67 22.28 0.19 -0.78 16 20 C -0.07 -0.08 10.04 22.25 0.22 0.14 16 21 C -0.20 -0.08 9.04 22.37 0.20 0.13 16 22 C -0.13 0.51 7.66 31.12 0.24 0.75 16 23 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.42 -5.12 8.70 -92.71 -0.81 -5.93 16 29 H 0.13 -1.19 7.66 -2.39 -0.02 -1.21 16 30 H 0.13 -1.13 7.66 -2.38 -0.02 -1.15 16 31 H 0.12 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.09 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.40 -3.33 8.74 -74.06 -0.65 -3.97 16 34 H -0.29 -1.54 7.05 99.48 0.70 -0.84 16 35 H -0.28 -0.95 7.11 99.48 0.71 -0.25 16 36 H 0.12 0.50 4.86 -2.91 -0.01 0.49 16 37 H 0.16 -0.81 8.06 -2.91 -0.02 -0.83 16 38 H 0.17 -1.34 6.30 -2.91 -0.02 -1.35 16 39 H 0.10 -0.74 8.14 -2.38 -0.02 -0.76 16 40 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -28.47 338.98 -0.40 -28.87 By element: Atomic # 1 Polarization: -15.85 SS G_CDS: -0.35 Total: -16.20 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 4.18 Total: 3.82 kcal Atomic # 7 Polarization: 2.70 SS G_CDS: -2.32 Total: 0.38 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -3.96 Total: -17.79 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.05 Total: 0.92 kcal Total: -28.47 -0.40 -28.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.766 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds