Wall clock time and date at job start Tue Mar 9 2021 13:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00321 * 2 1 4 4 H 1.09004 * 112.84450 * 341.20002 * 3 2 1 5 5 C 1.53778 * 113.61095 * 112.50268 * 3 2 1 6 6 C 1.53784 * 87.07731 * 139.98555 * 5 3 2 7 7 H 1.09000 * 113.68807 * 220.00491 * 6 5 3 8 8 N 1.46499 * 113.61633 * 89.11577 * 6 5 3 9 9 C 1.34784 * 119.99971 * 107.50076 * 8 6 5 10 10 O 1.21274 * 119.99897 * 359.72827 * 9 8 6 11 11 C 1.50695 * 119.99635 * 179.97438 * 9 8 6 12 12 N 1.46506 * 109.46874 * 180.02562 * 11 9 8 13 13 C 1.36828 * 125.05794 * 264.69612 * 12 11 9 14 14 C 1.34241 * 109.93527 * 179.81206 * 13 12 11 15 15 C 1.50703 * 126.50121 * 180.16613 * 14 13 12 16 16 O 1.42894 * 109.47454 * 255.32228 * 15 14 13 17 17 Si 1.86299 * 109.47111 * 15.32004 * 15 14 13 18 18 C 1.46484 * 107.00018 * 0.43599 * 14 13 12 19 19 C 1.39591 * 134.03993 * 179.75579 * 18 14 13 20 20 C 1.36658 * 119.76576 * 179.97438 * 19 18 14 21 21 C 1.38788 * 120.53108 * 0.02562 * 20 19 18 22 22 C 1.37789 * 120.66159 * 359.97438 * 21 20 19 23 23 C 1.37686 * 125.06420 * 84.99756 * 12 11 9 24 24 C 1.53776 * 87.08228 * 334.56321 * 6 5 3 25 25 H 1.09004 * 109.47228 * 59.99766 * 1 2 3 26 26 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46764 * 299.99665 * 1 2 3 28 28 H 1.08996 * 113.61870 * 25.43454 * 5 3 2 29 29 H 1.09003 * 113.61168 * 254.52825 * 5 3 2 30 30 H 0.96999 * 119.99984 * 287.49924 * 8 6 5 31 31 H 1.09005 * 109.47403 * 300.00056 * 11 9 8 32 32 H 1.09002 * 109.47422 * 60.00295 * 11 9 8 33 33 H 1.08006 * 125.03726 * 359.96533 * 13 12 11 34 34 H 1.08994 * 109.47220 * 135.31673 * 15 14 13 35 35 H 0.96705 * 114.00418 * 59.99564 * 16 15 14 36 36 H 1.48506 * 110.00142 * 58.68015 * 17 15 14 37 37 H 1.48497 * 110.00431 * 179.97438 * 17 15 14 38 38 H 1.08005 * 120.11054 * 359.97438 * 19 18 14 39 39 H 1.08002 * 119.73754 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.66973 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.10725 * 179.97438 * 22 21 20 42 42 H 1.09001 * 113.61142 * 139.97784 * 24 6 5 43 43 H 1.08997 * 113.61750 * 270.88948 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7535 1.6487 1.3018 6 6 3.8227 2.3180 0.4222 7 1 4.8431 2.1408 0.7620 8 7 3.5533 3.7309 0.1436 9 6 4.2936 4.6879 0.7375 10 8 5.1795 4.3796 1.5062 11 6 4.0168 6.1412 0.4505 12 7 4.9500 6.9756 1.2116 13 6 4.6861 7.5389 2.4304 14 6 5.7521 8.2374 2.8521 15 6 5.8678 9.0029 4.1451 16 8 5.7571 10.4029 3.8814 17 14 4.5040 8.4791 5.3011 18 6 6.7791 8.1199 1.8142 19 6 8.0760 8.6162 1.6718 20 6 8.7977 8.3168 0.5506 21 6 8.2514 7.5233 -0.4485 22 6 6.9732 7.0230 -0.3283 23 6 6.2208 7.3145 0.8045 24 6 3.3756 1.3718 -0.7045 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.1166 0.7739 1.8410 29 1 2.2141 2.3476 1.9412 30 1 2.8422 3.9775 -0.4682 31 1 4.1453 6.3320 -0.6150 32 1 2.9941 6.3807 0.7418 33 1 3.7586 7.4348 2.9739 34 1 6.8338 8.7951 4.6051 35 1 4.9204 10.6610 3.4709 36 1 4.5889 7.0189 5.5582 37 1 4.6073 9.2263 6.5802 38 1 8.5074 9.2347 2.4450 39 1 9.8009 8.7013 0.4407 40 1 8.8343 7.2950 -1.3285 41 1 6.5568 6.4067 -1.1115 42 1 3.3384 1.8471 -1.6848 43 1 3.9088 0.4212 -0.7138 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12343576_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:06 Heat of formation + Delta-G solvation = -9.226211 kcal Electronic energy + Delta-G solvation = -26241.628212 eV Core-core repulsion = 22448.475319 eV Total energy + Delta-G solvation = -3793.152893 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54737 -41.30903 -39.80312 -38.10946 -37.66406 -37.26771 -34.39087 -33.76083 -31.42732 -30.23822 -29.04099 -27.74174 -26.80285 -25.98711 -24.89743 -23.75244 -22.82460 -21.88464 -20.75260 -20.58188 -18.77118 -18.51318 -17.81639 -17.63270 -17.26864 -16.75836 -16.53785 -16.43213 -16.32770 -16.01739 -15.92819 -15.42098 -15.37771 -14.88046 -14.71345 -14.48464 -14.17006 -14.07657 -13.79276 -13.61076 -13.55114 -13.39264 -13.11755 -12.71967 -12.59469 -12.27226 -12.19424 -12.12732 -11.97938 -11.82706 -11.56348 -11.20149 -10.56525 -10.48503 -10.31471 -10.20943 -9.16622 -8.63375 -5.06615 0.13413 0.61998 1.33325 1.40161 1.41818 1.63460 1.74739 1.99533 2.14297 2.86657 2.93589 3.41217 3.48874 3.56021 3.64109 3.68646 3.74465 3.80074 3.88068 3.93440 4.04749 4.16597 4.20741 4.29169 4.36290 4.47489 4.47757 4.55216 4.55520 4.70723 4.70848 4.72505 4.77854 4.84767 4.87544 4.91297 4.91618 4.96949 5.12465 5.42288 5.49491 5.64904 5.72170 5.74385 6.18866 6.22295 6.27668 6.44658 6.89013 7.10831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.064 3.936 4 H 0.114 0.886 5 C -0.168 4.168 6 C 0.121 3.879 7 H 0.082 0.918 8 N -0.693 5.693 9 C 0.493 3.507 10 O -0.574 6.574 11 C 0.090 3.910 12 N -0.467 5.467 13 C 0.080 3.920 14 C -0.226 4.226 15 C -0.041 4.041 16 O -0.560 6.560 17 Si 0.803 3.197 18 C -0.118 4.118 19 C -0.092 4.092 20 C -0.154 4.154 21 C -0.109 4.109 22 C -0.133 4.133 23 C 0.091 3.909 24 C -0.135 4.135 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.422 0.578 31 H 0.147 0.853 32 H 0.171 0.829 33 H 0.209 0.791 34 H 0.087 0.913 35 H 0.394 0.606 36 H -0.296 1.296 37 H -0.298 1.298 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 0.213 -6.314 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.006 3.994 4 H 0.131 0.869 5 C -0.207 4.207 6 C 0.015 3.985 7 H 0.100 0.900 8 N -0.347 5.347 9 C 0.279 3.721 10 O -0.451 6.451 11 C -0.035 4.035 12 N -0.149 5.149 13 C -0.045 4.045 14 C -0.233 4.233 15 C -0.151 4.151 16 O -0.368 6.368 17 Si 0.708 3.292 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.173 4.173 21 C -0.128 4.128 22 C -0.153 4.153 23 C -0.015 4.015 24 C -0.173 4.173 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.261 0.739 31 H 0.164 0.836 32 H 0.189 0.811 33 H 0.226 0.774 34 H 0.105 0.895 35 H 0.243 0.757 36 H -0.223 1.223 37 H -0.226 1.226 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.255 -0.707 -4.924 10.507 hybrid contribution 0.727 -0.118 -0.087 0.742 sum -8.528 -0.825 -5.010 9.925 Atomic orbital electron populations 1.22956 0.79758 1.03605 1.00944 1.87934 1.21295 1.28381 1.94623 1.23942 0.94181 0.85563 0.95678 0.86881 1.23942 0.97933 1.00817 0.97980 1.21489 0.99061 0.80527 0.97471 0.90009 1.45467 1.37111 1.04429 1.47681 1.21595 0.81184 0.89394 0.79932 1.90816 1.33469 1.83774 1.37082 1.22021 0.96376 0.84824 1.00251 1.43444 1.11561 1.42408 1.17509 1.22079 1.00253 0.95913 0.86275 1.20790 0.94807 1.08863 0.98842 1.24573 1.08764 0.83359 0.98366 1.86452 1.44632 1.21343 1.84344 0.94159 0.82963 0.75724 0.76333 1.19379 0.95320 1.01800 0.95741 1.20446 0.92912 0.99379 0.98304 1.20911 1.00926 1.00976 0.94483 1.21133 0.94694 0.97327 0.99647 1.20263 0.94932 1.03597 0.96535 1.18388 0.86425 0.99803 0.96847 1.23549 0.95426 0.99782 0.98539 0.92468 0.89408 0.93337 0.89722 0.90605 0.73927 0.83560 0.81127 0.77442 0.89528 0.75669 1.22345 1.22571 0.86635 0.84699 0.83671 0.84735 0.88290 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 10.85 113.37 1.23 1.13 16 2 O -0.40 -0.33 10.71 -148.98 -1.60 -1.93 16 3 C 0.06 -0.30 4.19 31.12 0.13 -0.17 16 4 H 0.11 -1.16 7.87 -2.38 -0.02 -1.18 16 5 C -0.17 0.33 7.71 31.12 0.24 0.57 16 6 C 0.12 -0.30 4.32 45.52 0.20 -0.10 16 7 H 0.08 0.33 7.47 -2.39 -0.02 0.31 16 8 N -0.69 5.15 5.26 -440.04 -2.32 2.83 16 9 C 0.49 -0.78 7.90 87.65 0.69 -0.08 16 10 O -0.57 -6.51 16.03 -3.01 -0.05 -6.56 16 11 C 0.09 -0.78 6.48 85.63 0.56 -0.23 16 12 N -0.47 -0.36 2.27 -519.98 -1.18 -1.54 16 13 C 0.08 0.01 9.89 83.00 0.82 0.83 16 14 C -0.23 -1.29 5.57 -18.63 -0.10 -1.39 16 15 C -0.04 -0.18 3.06 71.24 0.22 0.04 16 16 O -0.56 -2.33 12.88 -148.98 -1.92 -4.25 16 17 Si 0.80 -0.30 30.76 68.60 2.11 1.81 16 18 C -0.12 -1.23 6.35 -20.20 -0.13 -1.35 16 19 C -0.09 -0.96 10.05 22.23 0.22 -0.74 16 20 C -0.15 -1.14 9.97 22.03 0.22 -0.92 16 21 C -0.11 -0.58 10.01 22.29 0.22 -0.35 16 22 C -0.13 -0.70 10.00 22.37 0.22 -0.47 16 23 C 0.09 0.65 6.80 39.03 0.27 0.91 16 24 C -0.13 0.68 7.66 31.12 0.24 0.91 16 25 H 0.06 -0.42 8.14 -2.38 -0.02 -0.44 16 26 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.05 -0.28 8.14 -2.38 -0.02 -0.30 16 28 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.42 -6.58 8.70 -92.71 -0.81 -7.39 16 31 H 0.15 -2.04 8.14 -2.38 -0.02 -2.06 16 32 H 0.17 -3.08 8.12 -2.39 -0.02 -3.10 16 33 H 0.21 -1.87 6.35 -2.91 -0.02 -1.89 16 34 H 0.09 0.71 7.96 -2.39 -0.02 0.69 16 35 H 0.39 -2.03 8.70 -74.05 -0.64 -2.67 16 36 H -0.30 -1.86 7.11 99.48 0.71 -1.15 16 37 H -0.30 -2.00 7.11 99.48 0.71 -1.30 16 38 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.14 0.46 8.06 -2.91 -0.02 0.43 16 40 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 41 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 42 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -31.63 365.47 -0.08 -31.71 By element: Atomic # 1 Polarization: -20.27 SS G_CDS: -0.38 Total: -20.65 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.24 Total: -1.42 kcal Atomic # 7 Polarization: 4.79 SS G_CDS: -3.49 Total: 1.29 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -3.56 Total: -12.74 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.11 Total: 1.81 kcal Total: -31.63 -0.08 -31.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12343576_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.485 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds