Wall clock time and date at job start Tue Mar 9 2021 13:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09003 * 112.84743 * 339.66880 * 3 2 1 5 5 C 1.53776 * 113.61391 * 110.86444 * 3 2 1 6 6 C 1.53951 * 87.02017 * 139.95174 * 5 3 2 7 7 H 1.09001 * 113.53486 * 89.18570 * 6 5 3 8 8 C 1.52991 * 113.74581 * 220.05576 * 6 5 3 9 9 N 1.46498 * 109.47485 * 272.59869 * 8 6 5 10 10 C 1.34774 * 120.00567 * 179.97438 * 9 8 6 11 11 O 1.21579 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.47602 * 120.00323 * 179.97438 * 10 9 8 13 13 C 1.39723 * 120.08561 * 359.73298 * 12 10 9 14 14 C 1.37722 * 119.90555 * 179.73931 * 13 12 10 15 15 C 1.50700 * 119.95373 * 180.25169 * 14 13 12 16 16 C 1.38979 * 120.09174 * 0.50563 * 14 13 12 17 17 O 1.35705 * 119.90962 * 179.74200 * 16 14 13 18 18 C 1.39018 * 120.17332 * 359.77089 * 16 14 13 19 19 C 1.50701 * 119.95154 * 179.97438 * 18 16 14 20 20 O 1.42902 * 109.47223 * 285.02056 * 19 18 16 21 21 Si 1.86301 * 109.46993 * 165.01753 * 19 18 16 22 22 C 1.37677 * 120.09009 * 359.96839 * 18 16 14 23 23 C 1.53776 * 113.61388 * 208.47490 * 3 2 1 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 27 27 H 1.09005 * 113.61401 * 254.53126 * 5 3 2 28 28 H 1.09000 * 113.61761 * 25.43254 * 5 3 2 29 29 H 1.09006 * 109.47201 * 32.59580 * 8 6 5 30 30 H 1.08998 * 109.47405 * 152.59701 * 8 6 5 31 31 H 0.97010 * 119.99562 * 359.97438 * 9 8 6 32 32 H 1.07996 * 120.04452 * 359.97438 * 13 12 10 33 33 H 1.08996 * 109.47235 * 270.25584 * 15 14 13 34 34 H 1.09003 * 109.47128 * 30.25552 * 15 14 13 35 35 H 1.08997 * 109.47424 * 150.25368 * 15 14 13 36 36 H 0.96706 * 114.00356 * 270.02306 * 17 16 14 37 37 H 1.09000 * 109.47196 * 45.01904 * 19 18 16 38 38 H 0.96707 * 113.99733 * 300.00433 * 20 19 18 39 39 H 1.48506 * 109.99890 * 58.68183 * 21 19 18 40 40 H 1.48498 * 109.99915 * 179.97438 * 21 19 18 41 41 H 1.07997 * 120.04402 * 179.97438 * 22 18 16 42 42 H 1.09004 * 113.61695 * 334.56393 * 23 3 2 43 43 H 1.08994 * 113.61849 * 105.38740 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7193 1.6640 1.3166 6 6 3.8121 2.3228 0.4552 7 1 3.6169 3.3716 0.2317 8 6 5.2322 2.0793 0.9696 9 7 5.5800 3.1105 1.9504 10 6 6.7909 3.0971 2.5419 11 8 7.5949 2.2294 2.2612 12 6 7.1414 4.1365 3.5296 13 6 6.2212 5.1384 3.8486 14 6 6.5501 6.1032 4.7746 15 6 5.5564 7.1810 5.1237 16 6 7.7992 6.0873 5.3838 17 8 8.1213 7.0429 6.2920 18 6 8.7196 5.0955 5.0649 19 6 10.0728 5.0834 5.7280 20 8 10.8887 6.1124 5.1645 21 14 10.8835 3.4285 5.4547 22 6 8.3965 4.1243 4.1441 23 6 3.3923 1.3643 -0.6718 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 2.1635 2.3702 1.9336 28 1 3.0682 0.7955 1.8753 29 1 5.2848 1.0976 1.4406 30 1 5.9328 2.1201 0.1356 31 1 4.9385 3.8031 2.1740 32 1 5.2520 5.1539 3.3724 33 1 5.6917 8.0306 4.4544 34 1 4.5443 6.7909 5.0155 35 1 5.7142 7.5011 6.1536 36 1 8.5368 7.8270 5.9074 37 1 9.9549 5.2580 6.7975 38 1 11.0362 6.0207 4.2132 39 1 11.0211 3.1644 3.9998 40 1 12.2191 3.4039 6.1034 41 1 9.1122 3.3544 3.8965 42 1 3.9256 0.4137 -0.6577 43 1 3.3790 1.8276 -1.6583 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12345242_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:46 Heat of formation + Delta-G solvation = -104.519072 kcal Electronic energy + Delta-G solvation = -25154.604249 eV Core-core repulsion = 21360.515147 eV Total energy + Delta-G solvation = -3794.089102 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74636 -40.78840 -40.08945 -37.97814 -37.60178 -37.37699 -35.43017 -33.99504 -32.05502 -29.17710 -27.98139 -27.45355 -26.83869 -26.63923 -24.73278 -23.15803 -22.04385 -21.64432 -20.50954 -19.60083 -18.87141 -18.12580 -17.80174 -17.28968 -16.76051 -16.68330 -16.49683 -16.30709 -16.07925 -15.93322 -15.85233 -15.49712 -14.95574 -14.69774 -14.37982 -14.22645 -14.07056 -13.88553 -13.56785 -13.41252 -13.30262 -12.93833 -12.86566 -12.74188 -12.48950 -12.42754 -11.97998 -11.91235 -11.70961 -11.64508 -11.40814 -11.09763 -10.64973 -10.41314 -10.25771 -9.97912 -9.64658 -5.01607 -0.40325 0.06661 1.19978 1.50340 1.59396 1.83014 2.01257 2.54681 2.89766 3.13928 3.32841 3.43265 3.48184 3.55833 3.65253 3.72386 3.82737 3.85408 4.01686 4.13280 4.17617 4.31445 4.39320 4.47715 4.48625 4.55660 4.63764 4.67131 4.72350 4.76277 4.82836 4.83285 4.84746 4.87908 5.02348 5.04832 5.09270 5.14634 5.21339 5.25728 5.33259 5.42937 5.59840 6.33050 6.39100 6.42266 6.71067 7.09427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.053 3.947 4 H 0.106 0.894 5 C -0.150 4.150 6 C -0.107 4.107 7 H 0.125 0.875 8 C 0.132 3.868 9 N -0.707 5.707 10 C 0.556 3.444 11 O -0.582 6.582 12 C -0.150 4.150 13 C -0.053 4.053 14 C -0.119 4.119 15 C -0.112 4.112 16 C 0.157 3.843 17 O -0.496 6.496 18 C -0.152 4.152 19 C -0.060 4.060 20 O -0.539 6.539 21 Si 0.742 3.258 22 C -0.067 4.067 23 C -0.131 4.131 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.416 0.584 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.127 0.873 38 H 0.385 0.615 39 H -0.290 1.290 40 H -0.291 1.291 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 5.039 -0.935 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.004 4.004 4 H 0.124 0.876 5 C -0.187 4.187 6 C -0.126 4.126 7 H 0.143 0.857 8 C 0.009 3.991 9 N -0.359 5.359 10 C 0.344 3.656 11 O -0.463 6.463 12 C -0.153 4.153 13 C -0.072 4.072 14 C -0.120 4.120 15 C -0.168 4.168 16 C 0.112 3.888 17 O -0.310 6.310 18 C -0.153 4.153 19 C -0.170 4.170 20 O -0.347 6.347 21 Si 0.648 3.352 22 C -0.085 4.085 23 C -0.169 4.169 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.254 0.746 32 H 0.182 0.818 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.272 0.728 37 H 0.145 0.855 38 H 0.235 0.765 39 H -0.217 1.217 40 H -0.218 1.218 41 H 0.148 0.852 42 H 0.098 0.902 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.663 3.647 -0.475 7.611 hybrid contribution 0.372 1.175 -1.106 1.656 sum -6.291 4.822 -1.581 8.083 Atomic orbital electron populations 1.22925 0.79974 1.03459 1.00809 1.87928 1.21125 1.28735 1.94754 1.23897 0.94224 0.85173 0.97128 0.87643 1.23620 0.97214 1.00839 0.97065 1.22534 0.91938 1.01112 0.96992 0.85747 1.21334 0.95883 0.90801 0.91079 1.45761 1.15580 1.31697 1.42910 1.18425 0.82008 0.84391 0.80757 1.90794 1.50832 1.39647 1.64999 1.19786 0.96298 0.98222 1.01002 1.21372 0.99241 0.91262 0.95276 1.20452 0.95791 0.99081 0.96632 1.20773 0.97211 0.96032 1.02828 1.18443 0.91689 0.90177 0.88521 1.84626 1.82251 1.30638 1.33452 1.20484 0.97633 0.97639 0.99517 1.24816 0.88897 1.01893 1.01442 1.86577 1.70662 1.48747 1.28701 0.93931 0.81060 0.80045 0.80129 1.21112 0.96182 0.97157 0.94098 1.23213 0.95174 0.99845 0.98660 0.89442 0.93009 0.93141 0.89371 0.90565 0.92416 0.91836 0.74552 0.81847 0.89742 0.89495 0.91081 0.72777 0.85531 0.76538 1.21667 1.21786 0.85180 0.90171 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.41 -1.24 10.71 -148.98 -1.60 -2.84 16 3 C 0.05 -0.14 4.29 31.12 0.13 -0.01 16 4 H 0.11 -0.68 7.88 -2.39 -0.02 -0.70 16 5 C -0.15 0.66 7.48 31.18 0.23 0.90 16 6 C -0.11 0.66 3.75 -10.21 -0.04 0.62 16 7 H 0.12 -1.33 8.14 -2.39 -0.02 -1.35 16 8 C 0.13 -0.13 5.52 86.38 0.48 0.35 16 9 N -0.71 1.46 5.51 -466.23 -2.57 -1.11 16 10 C 0.56 2.96 7.76 86.72 0.67 3.64 16 11 O -0.58 -8.48 16.34 -3.97 -0.06 -8.55 16 12 C -0.15 -0.30 5.88 -20.08 -0.12 -0.42 16 13 C -0.05 0.21 9.18 22.51 0.21 0.42 16 14 C -0.12 0.36 5.89 -19.81 -0.12 0.25 16 15 C -0.11 0.81 9.78 71.24 0.70 1.51 16 16 C 0.16 0.00 6.66 22.63 0.15 0.15 16 17 O -0.50 0.52 11.84 -90.25 -1.07 -0.55 16 18 C -0.15 -0.25 5.27 -19.81 -0.10 -0.36 16 19 C -0.06 -0.09 2.37 71.24 0.17 0.08 16 20 O -0.54 -1.18 12.88 -148.98 -1.92 -3.10 16 21 Si 0.74 2.09 30.24 68.60 2.07 4.17 16 22 C -0.07 -0.26 8.20 22.50 0.18 -0.08 16 23 C -0.13 0.42 7.47 31.12 0.23 0.65 16 24 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.05 -0.21 8.14 -2.38 -0.02 -0.23 16 27 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 28 H 0.08 -0.03 7.91 -2.39 -0.02 -0.05 16 29 H 0.06 0.17 7.86 -2.38 -0.02 0.15 16 30 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.42 -3.80 6.50 -92.70 -0.60 -4.40 16 32 H 0.16 -1.86 6.39 -2.91 -0.02 -1.88 16 33 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.09 -0.87 8.08 -2.39 -0.02 -0.89 16 35 H 0.07 -0.36 7.52 -2.39 -0.02 -0.38 16 36 H 0.41 -3.13 9.06 -74.05 -0.67 -3.80 16 37 H 0.13 0.13 7.82 -2.39 -0.02 0.11 16 38 H 0.39 -1.11 8.70 -74.05 -0.64 -1.76 16 39 H -0.29 -2.43 6.68 99.48 0.67 -1.76 16 40 H -0.29 -2.58 7.11 99.48 0.71 -1.88 16 41 H 0.13 0.84 4.43 -2.91 -0.01 0.83 16 42 H 0.08 0.02 8.10 -2.38 -0.02 0.00 16 43 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: 0.00 -21.52 357.07 -1.99 -23.51 By element: Atomic # 1 Polarization: -19.54 SS G_CDS: -0.86 Total: -20.41 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.01 Total: 8.87 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -2.57 Total: -1.11 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -4.65 Total: -15.03 kcal Atomic # 14 Polarization: 2.09 SS G_CDS: 2.07 Total: 4.17 kcal Total: -21.52 -1.99 -23.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12345242_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.008 kcal (2) G-P(sol) polarization free energy of solvation -21.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds